BLASTX nr result
ID: Coptis25_contig00019667
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00019667 (369 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI32274.3| unnamed protein product [Vitis vinifera] 128 5e-28 ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263... 128 5e-28 ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|2... 123 1e-26 ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putati... 122 3e-26 ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotei... 120 9e-26 >emb|CBI32274.3| unnamed protein product [Vitis vinifera] Length = 190 Score = 128 bits (321), Expect = 5e-28 Identities = 61/74 (82%), Positives = 61/74 (82%) Frame = +3 Query: 3 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQTAAF 182 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVR SLIDQRIKEHLGQTAAF Sbjct: 5 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAF 64 Query: 183 QQVGAAYNQHLASF 224 QQVGAAYNQHL SF Sbjct: 65 QQVGAAYNQHLVSF 78 >ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263028 [Vitis vinifera] gi|363805533|sp|F6HQ26.1|RU1C_VITVI RecName: Full=U1 small nuclear ribonucleoprotein C; Short=U1 snRNP C; Short=U1-C; Short=U1C Length = 213 Score = 128 bits (321), Expect = 5e-28 Identities = 61/74 (82%), Positives = 61/74 (82%) Frame = +3 Query: 3 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQTAAF 182 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVR SLIDQRIKEHLGQTAAF Sbjct: 5 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAF 64 Query: 183 QQVGAAYNQHLASF 224 QQVGAAYNQHL SF Sbjct: 65 QQVGAAYNQHLVSF 78 >ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|222841602|gb|EEE79149.1| predicted protein [Populus trichocarpa] Length = 202 Score = 123 bits (309), Expect = 1e-26 Identities = 58/71 (81%), Positives = 59/71 (83%) Frame = +3 Query: 3 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQTAAF 182 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVR S+IDQRIKEHLGQTAAF Sbjct: 5 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSIIDQRIKEHLGQTAAF 64 Query: 183 QQVGAAYNQHL 215 QQVGAAYNQHL Sbjct: 65 QQVGAAYNQHL 75 >ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putative [Ricinus communis] gi|223540083|gb|EEF41660.1| U1 small nuclear ribonucleoprotein C, putative [Ricinus communis] Length = 206 Score = 122 bits (306), Expect = 3e-26 Identities = 58/71 (81%), Positives = 58/71 (81%) Frame = +3 Query: 3 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQTAAF 182 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVR SLIDQRIKEHLGQ AAF Sbjct: 5 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAF 64 Query: 183 QQVGAAYNQHL 215 QQVGAAYNQHL Sbjct: 65 QQVGAAYNQHL 75 >ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotein C-like [Cucumis sativus] gi|449491514|ref|XP_004158922.1| PREDICTED: U1 small nuclear ribonucleoprotein C-like [Cucumis sativus] Length = 197 Score = 120 bits (302), Expect = 9e-26 Identities = 57/71 (80%), Positives = 58/71 (81%) Frame = +3 Query: 3 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQTAAF 182 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVR SLIDQRIKEHLGQ AAF Sbjct: 5 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAF 64 Query: 183 QQVGAAYNQHL 215 QQVGAA+NQHL Sbjct: 65 QQVGAAFNQHL 75