BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019667
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32274.3| unnamed protein product [Vitis vinifera]              128   5e-28
ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263...   128   5e-28
ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|2...   123   1e-26
ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putati...   122   3e-26
ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotei...   120   9e-26

>emb|CBI32274.3| unnamed protein product [Vitis vinifera]
          Length = 190

 Score =  128 bits (321), Expect = 5e-28
 Identities = 61/74 (82%), Positives = 61/74 (82%)
 Frame = +3

Query: 3   YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQTAAF 182
           YCDYCDTYLTHDSPSVRKQHNAGYKHKANVR            SLIDQRIKEHLGQTAAF
Sbjct: 5   YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAF 64

Query: 183 QQVGAAYNQHLASF 224
           QQVGAAYNQHL SF
Sbjct: 65  QQVGAAYNQHLVSF 78


>ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263028 [Vitis vinifera]
           gi|363805533|sp|F6HQ26.1|RU1C_VITVI RecName: Full=U1
           small nuclear ribonucleoprotein C; Short=U1 snRNP C;
           Short=U1-C; Short=U1C
          Length = 213

 Score =  128 bits (321), Expect = 5e-28
 Identities = 61/74 (82%), Positives = 61/74 (82%)
 Frame = +3

Query: 3   YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQTAAF 182
           YCDYCDTYLTHDSPSVRKQHNAGYKHKANVR            SLIDQRIKEHLGQTAAF
Sbjct: 5   YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAF 64

Query: 183 QQVGAAYNQHLASF 224
           QQVGAAYNQHL SF
Sbjct: 65  QQVGAAYNQHLVSF 78


>ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|222841602|gb|EEE79149.1|
           predicted protein [Populus trichocarpa]
          Length = 202

 Score =  123 bits (309), Expect = 1e-26
 Identities = 58/71 (81%), Positives = 59/71 (83%)
 Frame = +3

Query: 3   YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQTAAF 182
           YCDYCDTYLTHDSPSVRKQHNAGYKHKANVR            S+IDQRIKEHLGQTAAF
Sbjct: 5   YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSIIDQRIKEHLGQTAAF 64

Query: 183 QQVGAAYNQHL 215
           QQVGAAYNQHL
Sbjct: 65  QQVGAAYNQHL 75


>ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putative [Ricinus communis]
           gi|223540083|gb|EEF41660.1| U1 small nuclear
           ribonucleoprotein C, putative [Ricinus communis]
          Length = 206

 Score =  122 bits (306), Expect = 3e-26
 Identities = 58/71 (81%), Positives = 58/71 (81%)
 Frame = +3

Query: 3   YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQTAAF 182
           YCDYCDTYLTHDSPSVRKQHNAGYKHKANVR            SLIDQRIKEHLGQ AAF
Sbjct: 5   YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAF 64

Query: 183 QQVGAAYNQHL 215
           QQVGAAYNQHL
Sbjct: 65  QQVGAAYNQHL 75


>ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotein C-like [Cucumis
           sativus] gi|449491514|ref|XP_004158922.1| PREDICTED: U1
           small nuclear ribonucleoprotein C-like [Cucumis sativus]
          Length = 197

 Score =  120 bits (302), Expect = 9e-26
 Identities = 57/71 (80%), Positives = 58/71 (81%)
 Frame = +3

Query: 3   YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQTAAF 182
           YCDYCDTYLTHDSPSVRKQHNAGYKHKANVR            SLIDQRIKEHLGQ AAF
Sbjct: 5   YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAF 64

Query: 183 QQVGAAYNQHL 215
           QQVGAA+NQHL
Sbjct: 65  QQVGAAFNQHL 75