BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019657
         (749 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat...   378   e-103
ref|XP_002322703.1| predicted protein [Populus trichocarpa] gi|2...   375   e-102
ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vit...   368   e-100
ref|XP_003625160.1| Pentatricopeptide repeat-containing protein ...   365   7e-99
ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis...   356   3e-96

>ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g52630-like [Glycine max]
          Length = 582

 Score =  378 bits (971), Expect = e-103
 Identities = 184/249 (73%), Positives = 212/249 (85%)
 Frame = +1

Query: 1    PNFITFLGVMLVCSHAGMVEKGQFFFELMKKYTIEPGAQHYACLVDLLGRAGKLQEALSV 180
            PNFITFL ++  CSHAG+VEKG+  F LMK++ IEPG+QHYA LVDLLGRAGKL+EA+ V
Sbjct: 310  PNFITFLCLLYACSHAGLVEKGEHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLV 369

Query: 181  IKEMPMQPTESVWGALMTGCRIHGNTELAAFAADKVFELGTVSSGMHVLLSNXXXXXXXX 360
            IKEMPMQPTESVWGAL+TGCRIHGNTELA+F ADKVFE+G VSSG+ VLLSN        
Sbjct: 370  IKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRW 429

Query: 361  XXXXXXRKMLKDQGVKKETGLSWVEEGNRVNTFAAGDRTHPKSKQIFEKLEEIGEEMEQA 540
                  RKM++DQG+KKETGLSWVEEGNRV+TFAAGDR+H K+++I+EKLEE+GEEM +A
Sbjct: 430  EEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKA 489

Query: 541  GYIADTSFVLKEVGAEEKKQTIGYHSEKLAIAFGLITFPCERPIRVMKNLRVCGDCHNWI 720
            GY+ADTSFVLKEV  +EK QTI YHSE+LAIAFGLITFP E PIRVMKNLRVCGDCH  I
Sbjct: 490  GYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAI 549

Query: 721  KFVSKCTER 747
            KF+SKCT R
Sbjct: 550  KFISKCTGR 558


>ref|XP_002322703.1| predicted protein [Populus trichocarpa] gi|222867333|gb|EEF04464.1|
            predicted protein [Populus trichocarpa]
          Length = 627

 Score =  375 bits (963), Expect = e-102
 Identities = 181/249 (72%), Positives = 211/249 (84%)
 Frame = +1

Query: 1    PNFITFLGVMLVCSHAGMVEKGQFFFELMKKYTIEPGAQHYACLVDLLGRAGKLQEALSV 180
            PNFITFL V+  CSHAG+VE+G+ +F LMKKY IEPG QHYA +VDLLGRAGKLQEALSV
Sbjct: 355  PNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSV 414

Query: 181  IKEMPMQPTESVWGALMTGCRIHGNTELAAFAADKVFELGTVSSGMHVLLSNXXXXXXXX 360
            IK MP +PTESVWGA +TGCRIHGNT+LAAFAADKVFELG VSSG+HV+LSN        
Sbjct: 415  IKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRY 474

Query: 361  XXXXXXRKMLKDQGVKKETGLSWVEEGNRVNTFAAGDRTHPKSKQIFEKLEEIGEEMEQA 540
                  RKML+D+GVKKETGLSW+EEGNRV+ FAAGDR H + K+I++KLE++GEEME+A
Sbjct: 475  EDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERA 534

Query: 541  GYIADTSFVLKEVGAEEKKQTIGYHSEKLAIAFGLITFPCERPIRVMKNLRVCGDCHNWI 720
            GY+ADTSFVL+EVG+EEK QTI YHSE+LAIAFGLI+ P  RPIR+MKNLRVCGDCHN I
Sbjct: 535  GYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAI 594

Query: 721  KFVSKCTER 747
            KF+SK + R
Sbjct: 595  KFISKLSGR 603


>ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  368 bits (945), Expect = e-100
 Identities = 181/249 (72%), Positives = 209/249 (83%)
 Frame = +1

Query: 1   PNFITFLGVMLVCSHAGMVEKGQFFFELMKKYTIEPGAQHYACLVDLLGRAGKLQEALSV 180
           PNFITFL V+  CSHAG+VEKGQF+FELMK+Y IEPGAQHYA +VDLLGRAGKL++A+S+
Sbjct: 210 PNFITFLCVLYACSHAGLVEKGQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSI 269

Query: 181 IKEMPMQPTESVWGALMTGCRIHGNTELAAFAADKVFELGTVSSGMHVLLSNXXXXXXXX 360
           IK+MPM+PTESVWGAL+TGCRIHG+TELA+F AD+VFELG VSS                
Sbjct: 270 IKKMPMEPTESVWGALLTGCRIHGDTELASFVADRVFELGPVSSAA-----------GRY 318

Query: 361 XXXXXXRKMLKDQGVKKETGLSWVEEGNRVNTFAAGDRTHPKSKQIFEKLEEIGEEMEQA 540
                 RKML+DQGVKKETGLSWVEEGNR++TFAAGDR+HP +K I++KLEE+GEEME+A
Sbjct: 319 EEAARARKMLRDQGVKKETGLSWVEEGNRIHTFAAGDRSHPYTKDIYKKLEELGEEMERA 378

Query: 541 GYIADTSFVLKEVGAEEKKQTIGYHSEKLAIAFGLITFPCERPIRVMKNLRVCGDCHNWI 720
           GYIADTSFVL+EV  EEK QTI YHSE+LAIAFGLI+FP ERPIRVMKNLRVCGDCH  I
Sbjct: 379 GYIADTSFVLQEVDGEEKNQTIRYHSERLAIAFGLISFPPERPIRVMKNLRVCGDCHTAI 438

Query: 721 KFVSKCTER 747
           KF+SKC  R
Sbjct: 439 KFMSKCCGR 447


>ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|124360204|gb|ABN08217.1| Tetratricopeptide-like
            helical [Medicago truncatula] gi|355500175|gb|AES81378.1|
            Pentatricopeptide repeat-containing protein [Medicago
            truncatula]
          Length = 596

 Score =  365 bits (936), Expect = 7e-99
 Identities = 170/248 (68%), Positives = 211/248 (85%)
 Frame = +1

Query: 4    NFITFLGVMLVCSHAGMVEKGQFFFELMKKYTIEPGAQHYACLVDLLGRAGKLQEALSVI 183
            NFITFL V+  CSHAG+VEKG+++FELMK Y IEPG QHY+ +VDLLGRAGKL +A+ +I
Sbjct: 325  NFITFLCVLYACSHAGLVEKGKYYFELMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLI 384

Query: 184  KEMPMQPTESVWGALMTGCRIHGNTELAAFAADKVFELGTVSSGMHVLLSNXXXXXXXXX 363
            +EMPM+PTESVWGAL+TGCR+HGNT+LA++ AD+V ELG+VSSG+HV+LSN         
Sbjct: 385  EEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWE 444

Query: 364  XXXXXRKMLKDQGVKKETGLSWVEEGNRVNTFAAGDRTHPKSKQIFEKLEEIGEEMEQAG 543
                 RKM++D+G+KKETGLSWVEEGNR++TFAAGDR+H KS +I++KL+E+GEEM++AG
Sbjct: 445  EAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAG 504

Query: 544  YIADTSFVLKEVGAEEKKQTIGYHSEKLAIAFGLITFPCERPIRVMKNLRVCGDCHNWIK 723
            Y+ADTSFVLKEV  EEK ++I YHSE+LAIAFG ITFP  +PIRVMKNLRVCGDCH  IK
Sbjct: 505  YVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAIK 564

Query: 724  FVSKCTER 747
            F+SKCT R
Sbjct: 565  FISKCTGR 572


>ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
            gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName:
            Full=Putative pentatricopeptide repeat-containing protein
            At5g52630 gi|8953718|dbj|BAA98081.1| selenium-binding
            protein-like [Arabidopsis thaliana]
            gi|332008860|gb|AED96243.1| mitochondrial RNA editing
            factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  356 bits (913), Expect = 3e-96
 Identities = 172/249 (69%), Positives = 204/249 (81%)
 Frame = +1

Query: 1    PNFITFLGVMLVCSHAGMVEKGQFFFELMKKYTIEPGAQHYACLVDLLGRAGKLQEALSV 180
            PNFITFL V+  CSHAG+V++G+++F+ MK+  IEP  +HYA LVD+LGRAG+LQEAL V
Sbjct: 316  PNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEV 375

Query: 181  IKEMPMQPTESVWGALMTGCRIHGNTELAAFAADKVFELGTVSSGMHVLLSNXXXXXXXX 360
            I  MP+ PTESVWGAL+T C +H NTELAAFAADKVFELG VSSGMH+ LSN        
Sbjct: 376  ITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRF 435

Query: 361  XXXXXXRKMLKDQGVKKETGLSWVEEGNRVNTFAAGDRTHPKSKQIFEKLEEIGEEMEQA 540
                  RK+L+D+G KKETGLSWVEE N+V+TFAAG+R H KSK+I+EKL E+GEEME+A
Sbjct: 436  EDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKA 495

Query: 541  GYIADTSFVLKEVGAEEKKQTIGYHSEKLAIAFGLITFPCERPIRVMKNLRVCGDCHNWI 720
            GYIADTS+VL+EV  +EK QTI YHSE+LAIAFGLITFP +RPIRVMKNLRVCGDCHN I
Sbjct: 496  GYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAI 555

Query: 721  KFVSKCTER 747
            KF+S CT R
Sbjct: 556  KFMSVCTRR 564