BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019650
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524751.1| pentatricopeptide repeat-containing protein,...    44   6e-08
ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containi...    44   9e-08
emb|CBI28722.3| unnamed protein product [Vitis vinifera]               41   1e-07
ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containi...    41   1e-07
ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|2...    41   3e-07

>ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535935|gb|EEF37594.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 787

 Score = 43.9 bits (102), Expect(2) = 6e-08
 Identities = 17/34 (50%), Positives = 29/34 (85%)
 Frame = +2

Query: 284 KMPL*NAWKLYQQYKEMEGFPRKSILNNLLAGLA 385
           ++ L +AWKL++++ +MEGFP+KS++N LLA +A
Sbjct: 105 ELRLSDAWKLFEKHMQMEGFPQKSVVNKLLASIA 138



 Score = 37.7 bits (86), Expect(2) = 6e-08
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +1

Query: 193 GILIYPKNLKTMAETILVQARDPSRLSVELENAI 294
           G+     +L T+A TILVQARDP+RLS  +E+AI
Sbjct: 70  GLNYQVNSLSTLAGTILVQARDPARLSAGVEHAI 103


>ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Cucumis sativus]
           gi|449503826|ref|XP_004162196.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Cucumis sativus]
          Length = 796

 Score = 44.3 bits (103), Expect(2) = 9e-08
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = +2

Query: 299 NAWKLYQQYKEMEGFPRKSILNNLLAGLA 385
           + WKLYQQ+ +MEGFPRKS++N LL   A
Sbjct: 118 DTWKLYQQHMQMEGFPRKSVVNKLLTCFA 146



 Score = 36.6 bits (83), Expect(2) = 9e-08
 Identities = 16/28 (57%), Positives = 24/28 (85%)
 Frame = +1

Query: 211 KNLKTMAETILVQARDPSRLSVELENAI 294
           K L T++E ILVQARDP++LS++++ AI
Sbjct: 84  KLLSTLSERILVQARDPAKLSMDIQTAI 111


>emb|CBI28722.3| unnamed protein product [Vitis vinifera]
          Length = 1361

 Score = 40.8 bits (94), Expect(2) = 1e-07
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 299 NAWKLYQQYKEMEGFPRKSILNNLLAGLA 385
           +AWKL++Q+  MEGFPRKSI+N +L   +
Sbjct: 681 DAWKLFEQHMGMEGFPRKSIVNTVLTSFS 709



 Score = 39.7 bits (91), Expect(2) = 1e-07
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
 Frame = +1

Query: 7   QKCYSYSFTLPPKEDIDALLLSRHNGLFRREHVKEYSFSNPYFRLINYVLKRFSDFSFCR 186
           +K  S+   L P   + +LL S H+    R  ++ +S   P+F+ I+  L   +      
Sbjct: 582 RKLKSHITPLSPYSLLSSLLCSDHSIPICR--IRGFSRDRPFFQFISPYLTNLN------ 633

Query: 187 IVGILIYP------KNLKTMAETILVQARDPSRLSVELENAI 294
            +G  +        ++  +M  TILVQARDP++L  ELENAI
Sbjct: 634 -MGNAVLDSRSGSIQSFSSMGGTILVQARDPAKLCEELENAI 674


>ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Vitis vinifera]
          Length = 784

 Score = 40.8 bits (94), Expect(2) = 1e-07
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 299 NAWKLYQQYKEMEGFPRKSILNNLLAGLA 385
           +AWKL++Q+  MEGFPRKSI+N +L   +
Sbjct: 104 DAWKLFEQHMGMEGFPRKSIVNTVLTSFS 132



 Score = 39.7 bits (91), Expect(2) = 1e-07
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
 Frame = +1

Query: 7   QKCYSYSFTLPPKEDIDALLLSRHNGLFRREHVKEYSFSNPYFRLINYVLKRFSDFSFCR 186
           +K  S+   L P   + +LL S H+    R  ++ +S   P+F+ I+  L   +      
Sbjct: 5   RKLKSHITPLSPYSLLSSLLCSDHSIPICR--IRGFSRDRPFFQFISPYLTNLN------ 56

Query: 187 IVGILIYP------KNLKTMAETILVQARDPSRLSVELENAI 294
            +G  +        ++  +M  TILVQARDP++L  ELENAI
Sbjct: 57  -MGNAVLDSRSGSIQSFSSMGGTILVQARDPAKLCEELENAI 97


>ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|222856234|gb|EEE93781.1|
           predicted protein [Populus trichocarpa]
          Length = 750

 Score = 40.8 bits (94), Expect(2) = 3e-07
 Identities = 16/25 (64%), Positives = 22/25 (88%)
 Frame = +2

Query: 299 NAWKLYQQYKEMEGFPRKSILNNLL 373
           +AWKL++Q+  M+GFPRKSI+N LL
Sbjct: 73  DAWKLFEQHLHMDGFPRKSIVNKLL 97



 Score = 38.1 bits (87), Expect(2) = 3e-07
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +1

Query: 214 NLKTMAETILVQARDPSRLSVELENAI 294
           +  T+A TILVQARDP++L +E+ENAI
Sbjct: 40  SFSTLAGTILVQARDPAKLCMEIENAI 66