BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019592
         (2116 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]   643   0.0  
dbj|BAK61850.1| PPR containing protein [Citrus unshiu]                615   e-173
ref|XP_002308534.1| predicted protein [Populus trichocarpa] gi|2...   561   e-157
ref|XP_003523650.1| PREDICTED: pentatricopeptide repeat-containi...   402   e-109
ref|XP_002279628.2| PREDICTED: pentatricopeptide repeat-containi...   374   e-101

>emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score =  643 bits (1659), Expect = 0.0
 Identities = 315/541 (58%), Positives = 408/541 (75%), Gaps = 6/541 (1%)
 Frame = +2

Query: 53   ILPLITSINSVLQTLIHPNP------NYSQLNQFSLNLNPNLVIEVIKTQTNPQNALNFF 214
            +L   +SI S LQTL   NP      + S L+QF+  LNP LVI+VIK+Q NP +AL FF
Sbjct: 75   LLSTASSITSFLQTLNPQNPTPNSPTSISPLSQFAPFLNPXLVIQVIKSQKNPYHALFFF 134

Query: 215  KWASNPCPNPNNYFHTFQCYNAIIDVLLSHCLFTTAENILESSNNLGDFMIGKIIKAHGD 394
             WASNP PNPNNY H+  CY AI D+L+SH LF+TA ++L+S + L DF   K +KA+GD
Sbjct: 135  NWASNPNPNPNNYSHSHLCYVAITDLLISHGLFSTASSLLQSHHRLSDFAAAKFVKAYGD 194

Query: 395  RGSIRAAIYWLNRAKSIESYRCLFSYNSILGVLVRMNDISFARSIFDEIVKEGVIRPDVS 574
            RG IR AI+W +RAK +ES RCLFSYN+ILGV V+ N I  AR++FD+IVKEGV++PDVS
Sbjct: 195  RGDIRGAIHWFHRAKKMESGRCLFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVS 254

Query: 575  TYTTMIRGYCKLGMIEDAKRMFNGMCCKPNVFTYNTFVAGLCRKGEMKYAREIVDEMIVG 754
            TYTT+IRGYCK+GMIE+AK +F+ M CKPN+ TYNT + G C+KG M+ A +IVD+M   
Sbjct: 255  TYTTIIRGYCKMGMIENAKNVFDEMGCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTET 314

Query: 755  KECLPDTVTFTTLIDGYCKHNQLEEAEKCMEEMVRRNCKPNVYTYNAFIYGLCTNGKVEE 934
            ++C+PDTVT+TTLIDGYCK  +LEEA K MEEMV RNC+PNV TYNA IYGLC NG V+E
Sbjct: 315  EDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDE 374

Query: 935  AKRMMSKMRLNGLKDNVATHTNLLKGLCIVGRSDDAANHLKEMISLGLKPDVKAYSVVIH 1114
            AKRMM++MRLNGLKDNVATHT++LKGLC+VG+ DDAA HLKEM+ LG++ D KAY VV++
Sbjct: 375  AKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVN 434

Query: 1115 DYCKLGKPTKGIVLLDEMKSRSMNPHVSCFNSLFRALCDLGEHDRAIRYLKEMPQSGSSP 1294
            +YCK+GK    I LL EMKSR +NP VS FN++FR L + G+ D+A   L++M Q G +P
Sbjct: 435  EYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTP 494

Query: 1295 NFVSYSTVICKLCSVRGRMRDVEDLVVNMHQKGLLPDTTMYSTMVRGYCQDDDIQMAIGV 1474
            NF+SYSTVI  LC  +GRM +VE+ V +M + G   D +MYS +V+GYC+D +  MA+ +
Sbjct: 495  NFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRL 554

Query: 1475 LREMIEKGIVIHRESFSVFVEKLCGNGKASEVKKLFEEMRKRCPVPDVDSYQSLVNENLC 1654
              EM++ G VI+ ESF  FV+ L    KA EV+K FEEM +RCP  D+  Y+ +++E+LC
Sbjct: 555  FCEMLDMGYVINLESFLAFVKGLSAKEKAFEVEKFFEEMSRRCPGIDIHKYRRILDEHLC 614

Query: 1655 K 1657
            K
Sbjct: 615  K 615


>dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
          Length = 567

 Score =  615 bits (1585), Expect = e-173
 Identities = 299/555 (53%), Positives = 400/555 (72%), Gaps = 5/555 (0%)
 Frame = +2

Query: 5    MAMAGRSITQNTNPNSILPLITSINSVLQTLIHPNPNYSQ-----LNQFSLNLNPNLVIE 169
            MA   RS+T  +       L+TSI SV+Q L   NP+        L+QFSL L  N+V +
Sbjct: 1    MATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTK 60

Query: 170  VIKTQTNPQNALNFFKWASNPCPNPNNYFHTFQCYNAIIDVLLSHCLFTTAENILESSNN 349
            VI  QTNP +AL FF WASNP PNPN Y HT  CY AI DVLLSH L + A ++L++SN 
Sbjct: 61   VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK 120

Query: 350  LGDFMIGKIIKAHGDRGSIRAAIYWLNRAKSIESYRCLFSYNSILGVLVRMNDISFARSI 529
            L DF I K+IKA+GDRG+++AAI+W ++AK IE+  CL+SYNS+LGVLVR+N I  A   
Sbjct: 121  LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180

Query: 530  FDEIVKEGVIRPDVSTYTTMIRGYCKLGMIEDAKRMFNGMCCKPNVFTYNTFVAGLCRKG 709
            F +IVKE V+ PDVSTYTTMIRGYCK+GMIE+AK++F+ M  KPN+  YNT + G C+KG
Sbjct: 181  FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKG 240

Query: 710  EMKYAREIVDEMIVGKECLPDTVTFTTLIDGYCKHNQLEEAEKCMEEMVRRNCKPNVYTY 889
            +M+ AR + D M+ G++CLP+ VT+TTLIDGYCK  +LEEA+KCM EM+ R C+PN  TY
Sbjct: 241  DMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTY 300

Query: 890  NAFIYGLCTNGKVEEAKRMMSKMRLNGLKDNVATHTNLLKGLCIVGRSDDAANHLKEMIS 1069
            NA IYGLC NG+V+EAK +M+KMRLNG KDNV+TH ++LKGLC+VG+ D A  +L+ ++ 
Sbjct: 301  NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME 360

Query: 1070 LGLKPDVKAYSVVIHDYCKLGKPTKGIVLLDEMKSRSMNPHVSCFNSLFRALCDLGEHDR 1249
              + PDVK+Y VVI+ +CK+GK  + I LL EM++R + P V  FN++FR L + GE DR
Sbjct: 361  ANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR 420

Query: 1250 AIRYLKEMPQSGSSPNFVSYSTVICKLCSVRGRMRDVEDLVVNMHQKGLLPDTTMYSTMV 1429
            AI  LK+MPQ    PNFVSY+T+IC LC  +GRM+DVEDLV  M + G   D TMYS ++
Sbjct: 421  AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL 480

Query: 1430 RGYCQDDDIQMAIGVLREMIEKGIVIHRESFSVFVEKLCGNGKASEVKKLFEEMRKRCPV 1609
            +GYC++ +++  + +  EM+ K  VI  ESFSV V++LC  GK +E +KLF+    RCP 
Sbjct: 481  KGYCEEGNVENVMQIAHEMVTKKYVIGLESFSVLVKQLCAKGKVTEAEKLFDTC-SRCPA 539

Query: 1610 PDVDSYQSLVNENLC 1654
             DVDSY+ ++++ +C
Sbjct: 540  VDVDSYRRVLDQQIC 554


>ref|XP_002308534.1| predicted protein [Populus trichocarpa] gi|222854510|gb|EEE92057.1|
            predicted protein [Populus trichocarpa]
          Length = 567

 Score =  561 bits (1446), Expect = e-157
 Identities = 272/556 (48%), Positives = 390/556 (70%), Gaps = 6/556 (1%)
 Frame = +2

Query: 8    AMAGRSITQNTNPNSILPLITSINSVLQTLIHPNPNY-----SQLNQFSLNLNPNLVIEV 172
            A   R++T++   + +  L+T+I S L+TL   NPN      + LNQFS +L+ NLVIEV
Sbjct: 7    AATARTLTRHPRSSELASLVTAITSCLETLNPQNPNPKHINPTHLNQFSPHLDSNLVIEV 66

Query: 173  IKTQT-NPQNALNFFKWASNPCPNPNNYFHTFQCYNAIIDVLLSHCLFTTAENILESSNN 349
            IK Q  NP  AL FF WASN  PNPNNY H  +CY AIID+LLSH LF  A+N+LE    
Sbjct: 67   IKEQQPNPYQALFFFNWASNLNPNPNNYSHNHRCYVAIIDLLLSHSLFPIAKNLLEKHGT 126

Query: 350  LGDFMIGKIIKAHGDRGSIRAAIYWLNRAKSIESYRCLFSYNSILGVLVRMNDISFARSI 529
              D ++ K+I+A+G  G  ++AI+W ++ K I+  +CLFS+N+ILGVLV++N I+ A+S 
Sbjct: 127  FSDLLVSKLIRAYGYSGDTKSAIFWFHKVKEIQQGKCLFSWNAILGVLVKVNQINVAKSF 186

Query: 530  FDEIVKEGVIRPDVSTYTTMIRGYCKLGMIEDAKRMFNGMCCKPNVFTYNTFVAGLCRKG 709
            FD+IV + V++PD STYTTMIRG+CK+GMI++A+++F+ M C+PN+ T NT + G C+KG
Sbjct: 187  FDQIVNDAVVKPDASTYTTMIRGFCKVGMIDNARKVFDEMICEPNLITCNTLINGYCKKG 246

Query: 710  EMKYAREIVDEMIVGKECLPDTVTFTTLIDGYCKHNQLEEAEKCMEEMVRRNCKPNVYTY 889
            +M+ AR  +  M+  K+CLPDTVT++TLIDGYCK  +L EA K M+ M+ R C PN++TY
Sbjct: 247  DMENARIFLCRMMESKDCLPDTVTYSTLIDGYCKKGELNEARKWMDGMLIRGCNPNLWTY 306

Query: 890  NAFIYGLCTNGKVEEAKRMMSKMRLNGLKDNVATHTNLLKGLCIVGRSDDAANHLKEMIS 1069
            NA IYGLC  G V+EA+R+++KMRLNG+K+NVATH ++LKGL + G+S++A  +  EMI 
Sbjct: 307  NAIIYGLCLRGNVDEARRLLTKMRLNGVKENVATHLSILKGLSVAGKSEEAIGYFSEMIR 366

Query: 1070 LGLKPDVKAYSVVIHDYCKLGKPTKGIVLLDEMKSRSMNPHVSCFNSLFRALCDLGEHDR 1249
             G+K D K + VVI  YCK+ KP + I LL EM+++ ++  V  FN++ R L ++GE D+
Sbjct: 367  KGMKLDAKEHEVVITAYCKMRKPDEAISLLKEMQAKGISRSVGSFNAVLRILVEIGELDK 426

Query: 1250 AIRYLKEMPQSGSSPNFVSYSTVICKLCSVRGRMRDVEDLVVNMHQKGLLPDTTMYSTMV 1429
            A+  LK++   G  PN VSYSTVIC LC   GRM++V  LV +M Q G   D T+YS +V
Sbjct: 427  AVLLLKQVKNMGCLPNLVSYSTVICGLCRSHGRMQEVAGLVDDMLQDGFEMDATLYSCLV 486

Query: 1430 RGYCQDDDIQMAIGVLREMIEKGIVIHRESFSVFVEKLCGNGKASEVKKLFEEMRKRCPV 1609
             G+C+  + +MA+    + I K  VI+ +SFS FV  +CG GK  E +++F++M +RC +
Sbjct: 487  GGFCEAGNEEMAMRAFYDSINKNYVINLQSFSFFVNLMCGKGKVIEAEQIFKDMCRRCSL 546

Query: 1610 PDVDSYQSLVNENLCK 1657
             DVDSYQ ++++ L K
Sbjct: 547  VDVDSYQRVLDDQLHK 562


>ref|XP_003523650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g11690-like
            [Glycine max]
          Length = 472

 Score =  402 bits (1033), Expect = e-109
 Identities = 226/532 (42%), Positives = 312/532 (58%)
 Frame = +2

Query: 8    AMAGRSITQNTNPNSILPLITSINSVLQTLIHPNPNYSQLNQFSLNLNPNLVIEVIKTQT 187
            A+A    + +T P   L L+T I ++LQ +   NP+YS L +FS +L PNLVI VIK Q 
Sbjct: 9    AIAKPLCSSSTAPIPNLSLVTCITTILQNINPQNPDYSPLREFSSHLTPNLVIHVIKNQN 68

Query: 188  NPQNALNFFKWASNPCPNPNNYFHTFQCYNAIIDVLLSHCLFTTAENILESSNNLGDFMI 367
            NPQ+AL+FF WASNP PNPNNY HT  CY AI D+LLSH LF+TA ++L           
Sbjct: 69   NPQHALHFFNWASNPNPNPNNYSHTPLCYTAITDLLLSHSLFSTAFSLLR---------- 118

Query: 368  GKIIKAHGDRGSIRAAIYWLNRAKSIESYRCLFSYNSILGVLVRMNDISFARSIFDEIVK 547
                  H +R S              ++  C F     +  L    DI  A   F +   
Sbjct: 119  ------HSNRLS--------------DNLVCRF-----INALGHRGDIRGAIHWFHQA-- 151

Query: 548  EGVIRPDVSTYTTMIRGYCKLGMIEDAKRMFNGMCCKPNVFTYNTFVAGLCRKGEMKYAR 727
                        T  RG C                    VF+ N  +  L R   +  A+
Sbjct: 152  -----------NTFTRGRC--------------------VFSCNAILGVLVRANRVNIAK 180

Query: 728  EIVDEMIVGKECLPDTVTFTTLIDGYCKHNQLEEAEKCMEEMVRRNCKPNVYTYNAFIYG 907
             I D+++      PD  T+TT+I G+CK  ++E A K  +EM    C+PN+ TYN     
Sbjct: 181  AIYDQVLAEAVLEPDVYTYTTMIRGFCKVGKVESARKVFDEM---RCEPNIVTYNT---- 233

Query: 908  LCTNGKVEEAKRMMSKMRLNGLKDNVATHTNLLKGLCIVGRSDDAANHLKEMISLGLKPD 1087
                G+V+EA++MMS+MRLNGLKD+VAT+T+LLKG CIVG+SD+A  HL+EM+S G+KPD
Sbjct: 234  ----GEVDEARKMMSRMRLNGLKDDVATNTSLLKGFCIVGKSDEAVKHLREMVSRGMKPD 289

Query: 1088 VKAYSVVIHDYCKLGKPTKGIVLLDEMKSRSMNPHVSCFNSLFRALCDLGEHDRAIRYLK 1267
            VKAY VV+++YCK+ KP++ ++LL EM  R + P+VS FN++FR L D G+ D  +  LK
Sbjct: 290  VKAYGVVVNEYCKIRKPSEAVLLLREMVVRGVKPNVSSFNAVFRVLVDEGKIDEGLHLLK 349

Query: 1268 EMPQSGSSPNFVSYSTVICKLCSVRGRMRDVEDLVVNMHQKGLLPDTTMYSTMVRGYCQD 1447
            +MP+ G SPNF+SY TVIC LC V+GRM+ VE+LV NM Q G   D TMY+ ++ GYC+D
Sbjct: 350  QMPKMGCSPNFLSYCTVICGLCEVKGRMQQVEELVSNMLQNGHNLDATMYNCLLLGYCED 409

Query: 1448 DDIQMAIGVLREMIEKGIVIHRESFSVFVEKLCGNGKASEVKKLFEEMRKRC 1603
             D +MA   + ++++K  VI+++ F  FV+ LC  GK  E + + EEMR+RC
Sbjct: 410  RDEEMAQKTVYDIMDKNFVINQDIFCTFVKLLCAKGKLKEAETVSEEMRRRC 461



 Score = 75.5 bits (184), Expect = 5e-11
 Identities = 53/195 (27%), Positives = 94/195 (48%)
 Frame = +2

Query: 1076 LKPDVKAYSVVIHDYCKLGKPTKGIVLLDEMKSRSMNPHVSCFNSLFRALCDLGEHDRAI 1255
            L+PDV  Y+ +I  +CK+GK      + DEM+     P++  +N+        GE D A 
Sbjct: 192  LEPDVYTYTTMIRGFCKVGKVESARKVFDEMRCE---PNIVTYNT--------GEVDEAR 240

Query: 1256 RYLKEMPQSGSSPNFVSYSTVICKLCSVRGRMRDVEDLVVNMHQKGLLPDTTMYSTMVRG 1435
            + +  M  +G   +  + ++++   C V G+  +    +  M  +G+ PD   Y  +V  
Sbjct: 241  KMMSRMRLNGLKDDVATNTSLLKGFCIV-GKSDEAVKHLREMVSRGMKPDVKAYGVVVNE 299

Query: 1436 YCQDDDIQMAIGVLREMIEKGIVIHRESFSVFVEKLCGNGKASEVKKLFEEMRKRCPVPD 1615
            YC+      A+ +LREM+ +G+  +  SF+     L   GK  E   L ++M K    P+
Sbjct: 300  YCKIRKPSEAVLLLREMVVRGVKPNVSSFNAVFRVLVDEGKIDEGLHLLKQMPKMGCSPN 359

Query: 1616 VDSYQSLVNENLCKV 1660
              SY +++   LC+V
Sbjct: 360  FLSYCTVIC-GLCEV 373


>ref|XP_002279628.2| PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like
            [Vitis vinifera]
          Length = 563

 Score =  374 bits (959), Expect = e-101
 Identities = 226/542 (41%), Positives = 311/542 (57%), Gaps = 7/542 (1%)
 Frame = +2

Query: 53   ILPLITSINSVLQTLIHPNP------NYSQLNQFSLNLNPNLVIEVIKTQTNPQNALNFF 214
            +L   +SI S LQTL   NP      + S L+QF+  LNP+LVI+VIK+Q NP +AL FF
Sbjct: 75   LLSTASSITSFLQTLNPQNPTPNSPTSISPLSQFAPFLNPSLVIQVIKSQKNPYHALFFF 134

Query: 215  KWASNPCPNPNNYFHTFQCYNAIIDVLLSHCLFTTAENILESSNNLGDFMIGKIIKAHGD 394
             WASNP PNPNNY H+  CY A                            I  ++ +HG 
Sbjct: 135  NWASNPNPNPNNYSHSHLCYVA----------------------------ITDLLISHG- 165

Query: 395  RGSIRAAIYWLNRAKSIESYRCLFSY-NSILGVLVRMNDISFARSIFDEIVKEGVIRPDV 571
                                  LFS  +S+L    R++D + A+      VK    R D 
Sbjct: 166  ----------------------LFSTASSLLQSHHRLSDFAAAK-----FVKAYGDRGD- 197

Query: 572  STYTTMIRGYCKLGMIEDAKRMFNGMCCKPNVFTYNTFVAGLCRKGEMKYAREIVDEMIV 751
                  IRG   +     AK+M +G C    +F+YN  +    +   +  AR + D+++ 
Sbjct: 198  ------IRG--AIHWFHRAKKMESGRC----LFSYNAILGVFVKANRIMLARAVFDQIVK 245

Query: 752  GKECLPDTVTFTTLIDGYCKHNQLEEAEKCMEEMVRRNCKPNVYTYNAFIYGLCTNGKVE 931
                 PD  T+TT+I GYCK   +E A+   +EM    CKPN+             G V+
Sbjct: 246  EGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDEM---GCKPNL-------------GNVD 289

Query: 932  EAKRMMSKMRLNGLKDNVATHTNLLKGLCIVGRSDDAANHLKEMISLGLKPDVKAYSVVI 1111
            EAKRMM++MRLNGLKDNVATHT++LKGLC+VG+ DDAA HLKEM+ LG++ D KAY VV+
Sbjct: 290  EAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVV 349

Query: 1112 HDYCKLGKPTKGIVLLDEMKSRSMNPHVSCFNSLFRALCDLGEHDRAIRYLKEMPQSGSS 1291
            ++YCK+GK    I LL EMKSR +NP VS FN++FR L + G+ D+A   L++M Q G +
Sbjct: 350  NEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCT 409

Query: 1292 PNFVSYSTVICKLCSVRGRMRDVEDLVVNMHQKGLLPDTTMYSTMVRGYCQDDDIQMAIG 1471
            PNF+SYSTVI  LC  +GRM +VE+ V +M + G   D +MYS +V+GYC+D +  MA+ 
Sbjct: 410  PNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMR 469

Query: 1472 VLREMIEKGIVIHRESFSVFVEKLCGNGKASEVKKLFEEMRKRCPVPDVDSYQSLVNENL 1651
            +  EM++ G VI+ ESF  FV+ L    KA EV+K FEEM +RCP  D+  Y+ +++E+L
Sbjct: 470  LFCEMLDMGYVINLESFLAFVKGLSAKEKAFEVEKFFEEMSRRCPGIDIHKYRRILDEHL 529

Query: 1652 CK 1657
            CK
Sbjct: 530  CK 531