BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019564
         (842 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280516.1| PREDICTED: pentatricopeptide repeat-containi...   350   3e-94
ref|XP_002515341.1| pentatricopeptide repeat-containing protein,...   337   2e-90
ref|XP_002330760.1| predicted protein [Populus trichocarpa] gi|2...   315   8e-84
emb|CAN81324.1| hypothetical protein VITISV_041843 [Vitis vinifera]   308   1e-81
ref|XP_003545545.1| PREDICTED: pentatricopeptide repeat-containi...   306   3e-81

>ref|XP_002280516.1| PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like
            [Vitis vinifera]
          Length = 609

 Score =  350 bits (897), Expect = 3e-94
 Identities = 175/259 (67%), Positives = 212/259 (81%), Gaps = 1/259 (0%)
 Frame = +3

Query: 3    ALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWPDTSGTISPAL 182
            ALC+FGEI+K  G +  LRPKPHLY+SMM   A +GDY++VK  H RM PD++GTISPA+
Sbjct: 332  ALCMFGEIIKRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRPDSAGTISPAV 391

Query: 183  QVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEALSGFS-TMFS 359
            Q+EAD+LLMEAA+NDGQVD A   LSN+ T+W+ I W SRG M AVR+EAL GF+ +MFS
Sbjct: 392  QIEADQLLMEAALNDGQVDAATHHLSNIITRWKGICWRSRGGMVAVRLEALLGFTRSMFS 451

Query: 360  PYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDDWGSCVGLVHR 539
            PYLLPQV    PI+NIMMPF+EA+PL A + L++VVMRF++D+VVPVIDDWGSCVGL+HR
Sbjct: 452  PYLLPQVSPADPIENIMMPFEEARPLLATLDLKRVVMRFYKDSVVPVIDDWGSCVGLLHR 511

Query: 540  EDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNLYEIGYISSLR 719
            EDC++L   +S +MR PPPCVT +TSIGRV DL+LEKRYKM+VVVK +NLY   Y SSLR
Sbjct: 512  EDCRELDAPVSTMMRSPPPCVTTTTSIGRVADLILEKRYKMVVVVKYSNLYGSSYSSSLR 571

Query: 720  AVGVFTPEQLFKLATFASE 776
            AVGVFT EQLFKLA  ASE
Sbjct: 572  AVGVFTSEQLFKLA-IASE 589


>ref|XP_002515341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545285|gb|EEF46790.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 600

 Score =  337 bits (865), Expect = 2e-90
 Identities = 165/259 (63%), Positives = 204/259 (78%), Gaps = 1/259 (0%)
 Frame = +3

Query: 3    ALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWPDTSGTISPAL 182
            ALCIFGEI+K  GV+P LRPKPHLYLSMMR FA++GDY MVK  H R+WPD++GTISPA+
Sbjct: 325  ALCIFGEIIKRAGVNPDLRPKPHLYLSMMRAFAVQGDYSMVKNLHKRLWPDSTGTISPAI 384

Query: 183  QVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEALSGF-STMFS 359
            Q EAD LLMEAA+N GQVD A E L  +  +W  ISWT+RG M AVR+EAL GF  ++FS
Sbjct: 385  QQEADHLLMEAALNGGQVDAALENLRKIIPRWNGISWTNRGGMVAVRIEALLGFRKSIFS 444

Query: 360  PYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDDWGSCVGLVHR 539
            PYLLPQ+    PI+ IM P +EAQPL   + L+KVVMRFFRD VVP++DDWG+C+GL+HR
Sbjct: 445  PYLLPQISSSEPIETIMTPLEEAQPLLGTLELKKVVMRFFRDEVVPIMDDWGNCIGLLHR 504

Query: 540  EDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNLYEIGYISSLR 719
            EDC +L  +L+ +MR PPPCVT  TSIG V+DL+L+K+Y+M+VV+K +NL  I Y SS R
Sbjct: 505  EDCTELNATLATMMRSPPPCVTTMTSIGHVVDLILDKKYRMVVVIKYSNLDSITY-SSSR 563

Query: 720  AVGVFTPEQLFKLATFASE 776
            AVGVFT E+L+KLA   SE
Sbjct: 564  AVGVFTAEKLYKLAKPVSE 582


>ref|XP_002330760.1| predicted protein [Populus trichocarpa] gi|222872562|gb|EEF09693.1|
            predicted protein [Populus trichocarpa]
          Length = 607

 Score =  315 bits (807), Expect = 8e-84
 Identities = 158/260 (60%), Positives = 196/260 (75%), Gaps = 8/260 (3%)
 Frame = +3

Query: 3    ALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWPDTSGTISPAL 182
            A+C+FGEI+K  GV+P LRPKPHLYLS+MR FA +GDY+MVK  H R+WPD+SG IS AL
Sbjct: 324  AVCVFGEIIKRAGVNPKLRPKPHLYLSLMRAFASQGDYNMVKNLHKRLWPDSSGAISLAL 383

Query: 183  QVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWT-------SRGSMAAVRVEALSG 341
            Q EAD LLMEAA+NDGQV+VA E L+NV  KW+ I WT       + G + A+R+E L G
Sbjct: 384  QEEADHLLMEAALNDGQVNVALENLTNVVLKWKRIPWTIVPNPQFTCGMLVAMRIEVLLG 443

Query: 342  FS-TMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDDWGS 518
            F+ ++FSPYLLPQV    PI++IMMP   A+PL   ++L+KVVMRFF D VVP++DDWGS
Sbjct: 444  FTNSIFSPYLLPQVSPSEPIESIMMPLKAAKPLLGTLHLKKVVMRFFWDQVVPIVDDWGS 503

Query: 519  CVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNLYEI 698
            CVGL+HREDC +L   L  +MR PPPCVT +TSIG V+DL+LEK Y+M+VVVK +NL   
Sbjct: 504  CVGLLHREDCTELNAPLMTMMRSPPPCVTTTTSIGHVVDLILEKMYRMVVVVKYSNLNSS 563

Query: 699  GYISSLRAVGVFTPEQLFKL 758
               S  + VGVFT EQLFKL
Sbjct: 564  TNSSGSKTVGVFTTEQLFKL 583


>emb|CAN81324.1| hypothetical protein VITISV_041843 [Vitis vinifera]
          Length = 1120

 Score =  308 bits (788), Expect = 1e-81
 Identities = 162/259 (62%), Positives = 195/259 (75%), Gaps = 1/259 (0%)
 Frame = +3

Query: 3    ALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWPDTSGTISPAL 182
            ALCIFGEI+K  G +  LRPKPHLY+SMM   A +GDY++VK  H RM PD++GTISPA+
Sbjct: 332  ALCIFGEIIKRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRPDSAGTISPAV 391

Query: 183  QVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEALSGFS-TMFS 359
            Q+EAD+LLMEAA+NDGQV                          AVR+EAL GF+ +MFS
Sbjct: 392  QIEADQLLMEAALNDGQV--------------------------AVRLEALLGFTRSMFS 425

Query: 360  PYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDDWGSCVGLVHR 539
            PYLLPQV    PI+NIMMPF+EA+PL A + L++VVMRF++D+VVPVIDDWGSCVGL+H 
Sbjct: 426  PYLLPQVSPADPIENIMMPFEEARPLLATLDLKRVVMRFYKDSVVPVIDDWGSCVGLLHH 485

Query: 540  EDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNLYEIGYISSLR 719
            EDC++L   +S +MR PPPCVT +TSIGRV DL+LEKRYKM+VVVK +NLY   Y SSLR
Sbjct: 486  EDCRELDAPVSTMMRSPPPCVTTTTSIGRVADLILEKRYKMVVVVKYSNLYGSSYSSSLR 545

Query: 720  AVGVFTPEQLFKLATFASE 776
            AVGVFT EQLFKLA  ASE
Sbjct: 546  AVGVFTSEQLFKLA-MASE 563


>ref|XP_003545545.1| PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like
            [Glycine max]
          Length = 590

 Score =  306 bits (785), Expect = 3e-81
 Identities = 154/259 (59%), Positives = 194/259 (74%), Gaps = 1/259 (0%)
 Frame = +3

Query: 3    ALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWPDTSGTISPAL 182
            ALCIFGEILK TG++P L+PKPHLYLS+MR FA  GDY++VK  H R+WPD++GTI    
Sbjct: 327  ALCIFGEILKQTGLNPELKPKPHLYLSLMRAFAFLGDYYLVKKLHKRIWPDSAGTILLVA 386

Query: 183  QVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEALSGFS-TMFS 359
            Q EAD LLMEAA+N GQV+VA + L+ + +KW+ ISWTSRG M A R+EAL GFS ++FS
Sbjct: 387  QEEADHLLMEAALNAGQVNVAVKTLTEIVSKWKGISWTSRGGMVAYRIEALLGFSKSLFS 446

Query: 360  PYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDDWGSCVGLVHR 539
            P+LLPQV    P++N M+ F+  +PL  ++ L KVVMRFF +AVVP++D+WGSC GL+HR
Sbjct: 447  PHLLPQVSPSEPVENYMIQFEATRPLQGSIKLRKVVMRFFYEAVVPIVDEWGSCTGLLHR 506

Query: 540  EDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNLYEIGYISSLR 719
            EDC +L   L+ +MR PPP VT STSIG V+DL+LEKRY MI+VV   N Y     SS R
Sbjct: 507  EDCIELDAPLTTMMRSPPPTVTTSTSIGHVVDLILEKRYPMIIVVNYRNSYATTPYSS-R 565

Query: 720  AVGVFTPEQLFKLATFASE 776
            AVGVFT EQL +  T  S+
Sbjct: 566  AVGVFTSEQLSRFITPVSQ 584