BLASTX nr result
ID: Coptis25_contig00019561
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00019561 (1078 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002330010.1| predicted protein [Populus trichocarpa] gi|2... 364 2e-98 ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat... 360 4e-97 emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera] 360 4e-97 ref|XP_002513610.1| pentatricopeptide repeat-containing protein,... 347 3e-93 ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat... 332 1e-88 >ref|XP_002330010.1| predicted protein [Populus trichocarpa] gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa] Length = 677 Score = 364 bits (935), Expect = 2e-98 Identities = 179/279 (64%), Positives = 224/279 (80%) Frame = +3 Query: 240 LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419 LCNKILD PD TLKKLH+++L+ +LH NPS+GIKLMRAY++ GEP T +FDEI Sbjct: 40 LCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEI-- 97 Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599 DKN+VFFNVMIRSYVNN +Y +ALLV+ M G PDNYT+PCVLKACSVS NL VGL Sbjct: 98 TDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGL 157 Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779 QIH A+V+ GLD NL++GNGL++MYGKC L ARRVLD M RD+VSWNSMVAG+AQ G Sbjct: 158 QIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNG 217 Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959 RF+DAL++C+EME +KP+AGTM SL PAVTNTS NV +V++MF K+ K L+S+NVM Sbjct: 218 RFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVM 277 Query: 960 IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076 IA+ VNN++P EAV+++ Q++ G+EPD V+I+SVLPAC Sbjct: 278 IAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPAC 316 Score = 109 bits (273), Expect = 1e-21 Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 4/222 (1%) Frame = +3 Query: 423 DKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQ 602 +K+++ +NVMI YVNN M EA+ +Y+ M +GV PD + VL AC +G + Sbjct: 268 EKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRR 327 Query: 603 IHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGR 782 IH + R L NL + N LI MY KC L +AR V D M RDVVSW SM++ + G+ Sbjct: 328 IHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQ 387 Query: 783 FDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMA----MKELVSY 950 DA+ + K+M P+ S+ A ++ + V R FN MA + Y Sbjct: 388 GKDAVALFKKMRDSGFTPDWIAFVSVLAACSH--AGLVDEGRYCFNLMAEYGITPGIEHY 445 Query: 951 NVMIAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076 N M+ + EA + Q+ +EP+ S+L AC Sbjct: 446 NCMVDLLGRAGKIDEAYHLTRQMP---MEPNERVWGSLLSAC 484 >ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142-like [Vitis vinifera] Length = 678 Score = 360 bits (923), Expect = 4e-97 Identities = 182/279 (65%), Positives = 224/279 (80%) Frame = +3 Query: 240 LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419 LC +ILD PD+ LKKLH+++ + LHSNPS+GIKLMRAY+ GEP +T +FDEIP Sbjct: 40 LCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPK 99 Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599 KN+VFFNVMIRSYVNN +Y +ALLV+ NM +G+ PD+YT+PCVLKA S S++L VG+ Sbjct: 100 --KNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGM 157 Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779 QIHAA+VR GLD N+FVGNGLI+MYGKC L +A RVLD M RDVVSWNS+VAG A+ G Sbjct: 158 QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNG 217 Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959 +FDDALEVCKEME +KP+AGTMASL PAVTNT NV FV+EMF K+A K LVS+NVM Sbjct: 218 QFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVM 277 Query: 960 IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076 IA+ +NNS+P EAV+IF Q+E ++PD ++IASVLPAC Sbjct: 278 IAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 316 Score = 107 bits (266), Expect = 7e-21 Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 2/221 (0%) Frame = +3 Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599 A+K++V +NVMI Y+NN M EA+ +++ M + V PD + VL AC L +G Sbjct: 267 ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGR 326 Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779 +IH +VR L NL + N LI MY KC L AR V D M+ RDVVSW SM++ + G Sbjct: 327 RIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNG 386 Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959 + DA+ + M+ + P++ S+ A ++ + R F M + + + Sbjct: 387 KGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEG--RYYFKLMTEECKIVPRIE 444 Query: 960 IAICVNNSL--PTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076 +C+ + L + E + I+ +EP+ ++L AC Sbjct: 445 HFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC 485 >emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera] Length = 1740 Score = 360 bits (923), Expect = 4e-97 Identities = 182/279 (65%), Positives = 224/279 (80%) Frame = +3 Query: 240 LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419 LC +ILD PD+ LKKLH+++ + LHSNPS+GIKLMRAY+ GEP +T +FDEIP Sbjct: 1029 LCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPK 1088 Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599 KN+VFFNVMIRSYVNN +Y +ALLV+ NM +G+ PD+YT+PCVLKA S S++L VG+ Sbjct: 1089 --KNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGM 1146 Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779 QIHAA+VR GLD N+FVGNGLI+MYGKC L +A RVLD M RDVVSWNS+VAG A+ G Sbjct: 1147 QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNG 1206 Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959 +FDDALEVCKEME +KP+AGTMASL PAVTNT NV FV+EMF K+A K LVS+NVM Sbjct: 1207 QFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVM 1266 Query: 960 IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076 IA+ +NNS+P EAV+IF Q+E ++PD ++IASVLPAC Sbjct: 1267 IAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 1305 Score = 107 bits (266), Expect = 7e-21 Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 2/221 (0%) Frame = +3 Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599 A+K++V +NVMI Y+NN M EA+ +++ M + V PD + VL AC L +G Sbjct: 1256 ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGR 1315 Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779 +IH +VR L NL + N LI MY KC L AR V D M+ RDVVSW SM++ + G Sbjct: 1316 RIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNG 1375 Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959 + DA+ + M+ + P++ S+ A ++ + R F M + + + Sbjct: 1376 KGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEG--RYYFKLMTEECKIVPRIE 1433 Query: 960 IAICVNNSL--PTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076 +C+ + L + E + I+ +EP+ ++L AC Sbjct: 1434 HFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC 1474 >ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 660 Score = 347 bits (890), Expect = 3e-93 Identities = 176/278 (63%), Positives = 219/278 (78%) Frame = +3 Query: 240 LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419 LCN+ILD PD+ TLKKLH +VL +L NPS+GIKLMR Y++ GEP +FDEI Sbjct: 23 LCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEI-- 80 Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599 DKN+VFFNVMIRSYVNN +Y +ALLVY M+ G VPD YT+PCVLKA S SD+L VGL Sbjct: 81 TDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGL 140 Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779 QIH A+++ GLD NL+VGNGLIAMYGKC L +A++VLD + RDVVSWNSMV+ +AQ G Sbjct: 141 QIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNG 200 Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959 RF+DALE+C+EME +KPN TMASL PAVTNT+S NV +V+EMF K+ K ++S+NVM Sbjct: 201 RFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVM 260 Query: 960 IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPA 1073 IA+ VNNS+P EAV ++SQ+E+ G+EPD V+I SVLPA Sbjct: 261 IAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPA 298 Score = 100 bits (248), Expect = 8e-19 Identities = 75/219 (34%), Positives = 109/219 (49%), Gaps = 2/219 (0%) Frame = +3 Query: 426 KNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQI 605 K+++ +NVMI YVNN M EA+++Y M GV PD + VL A L +G ++ Sbjct: 252 KSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRV 311 Query: 606 HAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGRF 785 H R L NL + N LI MY KC L DAR V + M+ RDVVSW S+++ + + G+ Sbjct: 312 HKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQG 371 Query: 786 DDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVMIA 965 DA+ V EM + P++ S+ A ++ + + R FN MA + A Sbjct: 372 RDAVAVFAEMRNSGLNPDSIAFVSVLAACSH--AGLLDDGRYYFNLMAECGITPKLEHFA 429 Query: 966 ICVNNSL--PTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076 CV + L + E + I LEPD +L AC Sbjct: 430 -CVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSAC 467 >ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142-like [Cucumis sativus] Length = 678 Score = 332 bits (850), Expect = 1e-88 Identities = 165/278 (59%), Positives = 209/278 (75%) Frame = +3 Query: 243 CNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPAA 422 C ILD P + TL KLH+++++ +HL +P++ IKLMRAYS+ GE +FD + Sbjct: 41 CEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDR--SL 98 Query: 423 DKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQ 602 +KN+VFFNVMIRSYVNN +Y EAL ++ M PD+YTFPCVLKACS DNL+VGLQ Sbjct: 99 EKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQ 158 Query: 603 IHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGR 782 +H AIV+ GLD NLF+GN L+AMYGKC L +AR+VLD M RDVVSWNSMVAG+AQ G+ Sbjct: 159 VHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQ 218 Query: 783 FDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVMI 962 FDDALE+CKEM++ + +AGTMASL P V TS NVQ++ MF +M K L+S+NVMI Sbjct: 219 FDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMI 278 Query: 963 AICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076 AI VNNS+P EAV +F Q+E G++PD VTIAS+LPAC Sbjct: 279 AIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316 Score = 107 bits (266), Expect = 7e-21 Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 2/219 (0%) Frame = +3 Query: 426 KNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQI 605 KN++ +NVMI YVNN M EA+ +++ M G+ PD T +L AC L +G ++ Sbjct: 269 KNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRL 328 Query: 606 HAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGRF 785 H I + L NL + N L+ MY KC L +AR V D MR RDVVSW SM++ + + G+ Sbjct: 329 HKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQG 388 Query: 786 DDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVMIA 965 DA+ + +M P++ S+ A ++T + R F M + + + Sbjct: 389 YDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQG--RHYFRMMTEQYGIVPRIEHF 446 Query: 966 ICVNN--SLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076 C+ + E E +S I+ +EP+ ++L AC Sbjct: 447 ACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC 485