BLASTX nr result
ID: Coptis25_contig00019561
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00019561
(1078 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002330010.1| predicted protein [Populus trichocarpa] gi|2... 364 2e-98
ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat... 360 4e-97
emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera] 360 4e-97
ref|XP_002513610.1| pentatricopeptide repeat-containing protein,... 347 3e-93
ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat... 332 1e-88
>ref|XP_002330010.1| predicted protein [Populus trichocarpa] gi|222871435|gb|EEF08566.1|
predicted protein [Populus trichocarpa]
Length = 677
Score = 364 bits (935), Expect = 2e-98
Identities = 179/279 (64%), Positives = 224/279 (80%)
Frame = +3
Query: 240 LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419
LCNKILD PD TLKKLH+++L+ +LH NPS+GIKLMRAY++ GEP T +FDEI
Sbjct: 40 LCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEI-- 97
Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
DKN+VFFNVMIRSYVNN +Y +ALLV+ M G PDNYT+PCVLKACSVS NL VGL
Sbjct: 98 TDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGL 157
Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
QIH A+V+ GLD NL++GNGL++MYGKC L ARRVLD M RD+VSWNSMVAG+AQ G
Sbjct: 158 QIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNG 217
Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
RF+DAL++C+EME +KP+AGTM SL PAVTNTS NV +V++MF K+ K L+S+NVM
Sbjct: 218 RFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVM 277
Query: 960 IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
IA+ VNN++P EAV+++ Q++ G+EPD V+I+SVLPAC
Sbjct: 278 IAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPAC 316
Score = 109 bits (273), Expect = 1e-21
Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 4/222 (1%)
Frame = +3
Query: 423 DKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQ 602
+K+++ +NVMI YVNN M EA+ +Y+ M +GV PD + VL AC +G +
Sbjct: 268 EKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRR 327
Query: 603 IHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGR 782
IH + R L NL + N LI MY KC L +AR V D M RDVVSW SM++ + G+
Sbjct: 328 IHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQ 387
Query: 783 FDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMA----MKELVSY 950
DA+ + K+M P+ S+ A ++ + V R FN MA + Y
Sbjct: 388 GKDAVALFKKMRDSGFTPDWIAFVSVLAACSH--AGLVDEGRYCFNLMAEYGITPGIEHY 445
Query: 951 NVMIAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
N M+ + EA + Q+ +EP+ S+L AC
Sbjct: 446 NCMVDLLGRAGKIDEAYHLTRQMP---MEPNERVWGSLLSAC 484
>ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 360 bits (923), Expect = 4e-97
Identities = 182/279 (65%), Positives = 224/279 (80%)
Frame = +3
Query: 240 LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419
LC +ILD PD+ LKKLH+++ + LHSNPS+GIKLMRAY+ GEP +T +FDEIP
Sbjct: 40 LCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPK 99
Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
KN+VFFNVMIRSYVNN +Y +ALLV+ NM +G+ PD+YT+PCVLKA S S++L VG+
Sbjct: 100 --KNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGM 157
Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
QIHAA+VR GLD N+FVGNGLI+MYGKC L +A RVLD M RDVVSWNS+VAG A+ G
Sbjct: 158 QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNG 217
Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
+FDDALEVCKEME +KP+AGTMASL PAVTNT NV FV+EMF K+A K LVS+NVM
Sbjct: 218 QFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVM 277
Query: 960 IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
IA+ +NNS+P EAV+IF Q+E ++PD ++IASVLPAC
Sbjct: 278 IAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 316
Score = 107 bits (266), Expect = 7e-21
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 2/221 (0%)
Frame = +3
Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
A+K++V +NVMI Y+NN M EA+ +++ M + V PD + VL AC L +G
Sbjct: 267 ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGR 326
Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
+IH +VR L NL + N LI MY KC L AR V D M+ RDVVSW SM++ + G
Sbjct: 327 RIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNG 386
Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
+ DA+ + M+ + P++ S+ A ++ + R F M + + +
Sbjct: 387 KGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEG--RYYFKLMTEECKIVPRIE 444
Query: 960 IAICVNNSL--PTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
+C+ + L + E + I+ +EP+ ++L AC
Sbjct: 445 HFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC 485
>emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 360 bits (923), Expect = 4e-97
Identities = 182/279 (65%), Positives = 224/279 (80%)
Frame = +3
Query: 240 LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419
LC +ILD PD+ LKKLH+++ + LHSNPS+GIKLMRAY+ GEP +T +FDEIP
Sbjct: 1029 LCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPK 1088
Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
KN+VFFNVMIRSYVNN +Y +ALLV+ NM +G+ PD+YT+PCVLKA S S++L VG+
Sbjct: 1089 --KNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGM 1146
Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
QIHAA+VR GLD N+FVGNGLI+MYGKC L +A RVLD M RDVVSWNS+VAG A+ G
Sbjct: 1147 QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNG 1206
Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
+FDDALEVCKEME +KP+AGTMASL PAVTNT NV FV+EMF K+A K LVS+NVM
Sbjct: 1207 QFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVM 1266
Query: 960 IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
IA+ +NNS+P EAV+IF Q+E ++PD ++IASVLPAC
Sbjct: 1267 IAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 1305
Score = 107 bits (266), Expect = 7e-21
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 2/221 (0%)
Frame = +3
Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
A+K++V +NVMI Y+NN M EA+ +++ M + V PD + VL AC L +G
Sbjct: 1256 ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGR 1315
Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
+IH +VR L NL + N LI MY KC L AR V D M+ RDVVSW SM++ + G
Sbjct: 1316 RIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNG 1375
Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
+ DA+ + M+ + P++ S+ A ++ + R F M + + +
Sbjct: 1376 KGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEG--RYYFKLMTEECKIVPRIE 1433
Query: 960 IAICVNNSL--PTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
+C+ + L + E + I+ +EP+ ++L AC
Sbjct: 1434 HFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC 1474
>ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547518|gb|EEF49013.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 660
Score = 347 bits (890), Expect = 3e-93
Identities = 176/278 (63%), Positives = 219/278 (78%)
Frame = +3
Query: 240 LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419
LCN+ILD PD+ TLKKLH +VL +L NPS+GIKLMR Y++ GEP +FDEI
Sbjct: 23 LCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEI-- 80
Query: 420 ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
DKN+VFFNVMIRSYVNN +Y +ALLVY M+ G VPD YT+PCVLKA S SD+L VGL
Sbjct: 81 TDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGL 140
Query: 600 QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
QIH A+++ GLD NL+VGNGLIAMYGKC L +A++VLD + RDVVSWNSMV+ +AQ G
Sbjct: 141 QIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNG 200
Query: 780 RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
RF+DALE+C+EME +KPN TMASL PAVTNT+S NV +V+EMF K+ K ++S+NVM
Sbjct: 201 RFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVM 260
Query: 960 IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPA 1073
IA+ VNNS+P EAV ++SQ+E+ G+EPD V+I SVLPA
Sbjct: 261 IAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPA 298
Score = 100 bits (248), Expect = 8e-19
Identities = 75/219 (34%), Positives = 109/219 (49%), Gaps = 2/219 (0%)
Frame = +3
Query: 426 KNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQI 605
K+++ +NVMI YVNN M EA+++Y M GV PD + VL A L +G ++
Sbjct: 252 KSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRV 311
Query: 606 HAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGRF 785
H R L NL + N LI MY KC L DAR V + M+ RDVVSW S+++ + + G+
Sbjct: 312 HKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQG 371
Query: 786 DDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVMIA 965
DA+ V EM + P++ S+ A ++ + + R FN MA + A
Sbjct: 372 RDAVAVFAEMRNSGLNPDSIAFVSVLAACSH--AGLLDDGRYYFNLMAECGITPKLEHFA 429
Query: 966 ICVNNSL--PTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
CV + L + E + I LEPD +L AC
Sbjct: 430 -CVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSAC 467
>ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 332 bits (850), Expect = 1e-88
Identities = 165/278 (59%), Positives = 209/278 (75%)
Frame = +3
Query: 243 CNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPAA 422
C ILD P + TL KLH+++++ +HL +P++ IKLMRAYS+ GE +FD +
Sbjct: 41 CEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDR--SL 98
Query: 423 DKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQ 602
+KN+VFFNVMIRSYVNN +Y EAL ++ M PD+YTFPCVLKACS DNL+VGLQ
Sbjct: 99 EKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQ 158
Query: 603 IHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGR 782
+H AIV+ GLD NLF+GN L+AMYGKC L +AR+VLD M RDVVSWNSMVAG+AQ G+
Sbjct: 159 VHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQ 218
Query: 783 FDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVMI 962
FDDALE+CKEM++ + +AGTMASL P V TS NVQ++ MF +M K L+S+NVMI
Sbjct: 219 FDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMI 278
Query: 963 AICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
AI VNNS+P EAV +F Q+E G++PD VTIAS+LPAC
Sbjct: 279 AIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316
Score = 107 bits (266), Expect = 7e-21
Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 2/219 (0%)
Frame = +3
Query: 426 KNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQI 605
KN++ +NVMI YVNN M EA+ +++ M G+ PD T +L AC L +G ++
Sbjct: 269 KNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRL 328
Query: 606 HAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGRF 785
H I + L NL + N L+ MY KC L +AR V D MR RDVVSW SM++ + + G+
Sbjct: 329 HKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQG 388
Query: 786 DDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVMIA 965
DA+ + +M P++ S+ A ++T + R F M + + +
Sbjct: 389 YDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQG--RHYFRMMTEQYGIVPRIEHF 446
Query: 966 ICVNN--SLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
C+ + E E +S I+ +EP+ ++L AC
Sbjct: 447 ACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC 485