BLASTX nr result

ID: Coptis25_contig00019561 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019561
         (1078 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330010.1| predicted protein [Populus trichocarpa] gi|2...   364   2e-98
ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat...   360   4e-97
emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]   360   4e-97
ref|XP_002513610.1| pentatricopeptide repeat-containing protein,...   347   3e-93
ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat...   332   1e-88

>ref|XP_002330010.1| predicted protein [Populus trichocarpa] gi|222871435|gb|EEF08566.1|
            predicted protein [Populus trichocarpa]
          Length = 677

 Score =  364 bits (935), Expect = 2e-98
 Identities = 179/279 (64%), Positives = 224/279 (80%)
 Frame = +3

Query: 240  LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419
            LCNKILD  PD  TLKKLH+++L+  +LH NPS+GIKLMRAY++ GEP  T  +FDEI  
Sbjct: 40   LCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEI-- 97

Query: 420  ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
             DKN+VFFNVMIRSYVNN +Y +ALLV+  M   G  PDNYT+PCVLKACSVS NL VGL
Sbjct: 98   TDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGL 157

Query: 600  QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
            QIH A+V+ GLD NL++GNGL++MYGKC  L  ARRVLD M  RD+VSWNSMVAG+AQ G
Sbjct: 158  QIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNG 217

Query: 780  RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
            RF+DAL++C+EME   +KP+AGTM SL PAVTNTS  NV +V++MF K+  K L+S+NVM
Sbjct: 218  RFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVM 277

Query: 960  IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
            IA+ VNN++P EAV+++ Q++  G+EPD V+I+SVLPAC
Sbjct: 278  IAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPAC 316



 Score =  109 bits (273), Expect = 1e-21
 Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 4/222 (1%)
 Frame = +3

Query: 423  DKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQ 602
            +K+++ +NVMI  YVNN M  EA+ +Y+ M  +GV PD  +   VL AC       +G +
Sbjct: 268  EKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRR 327

Query: 603  IHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGR 782
            IH  + R  L  NL + N LI MY KC  L +AR V D M  RDVVSW SM++ +   G+
Sbjct: 328  IHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQ 387

Query: 783  FDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMA----MKELVSY 950
              DA+ + K+M      P+     S+  A ++  +  V   R  FN MA       +  Y
Sbjct: 388  GKDAVALFKKMRDSGFTPDWIAFVSVLAACSH--AGLVDEGRYCFNLMAEYGITPGIEHY 445

Query: 951  NVMIAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
            N M+ +        EA  +  Q+    +EP+     S+L AC
Sbjct: 446  NCMVDLLGRAGKIDEAYHLTRQMP---MEPNERVWGSLLSAC 484


>ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  360 bits (923), Expect = 4e-97
 Identities = 182/279 (65%), Positives = 224/279 (80%)
 Frame = +3

Query: 240  LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419
            LC +ILD  PD+  LKKLH+++ +   LHSNPS+GIKLMRAY+  GEP +T  +FDEIP 
Sbjct: 40   LCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPK 99

Query: 420  ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
              KN+VFFNVMIRSYVNN +Y +ALLV+ NM  +G+ PD+YT+PCVLKA S S++L VG+
Sbjct: 100  --KNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGM 157

Query: 600  QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
            QIHAA+VR GLD N+FVGNGLI+MYGKC  L +A RVLD M  RDVVSWNS+VAG A+ G
Sbjct: 158  QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNG 217

Query: 780  RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
            +FDDALEVCKEME   +KP+AGTMASL PAVTNT   NV FV+EMF K+A K LVS+NVM
Sbjct: 218  QFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVM 277

Query: 960  IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
            IA+ +NNS+P EAV+IF Q+E   ++PD ++IASVLPAC
Sbjct: 278  IAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 316



 Score =  107 bits (266), Expect = 7e-21
 Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 2/221 (0%)
 Frame = +3

Query: 420  ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
            A+K++V +NVMI  Y+NN M  EA+ +++ M  + V PD  +   VL AC     L +G 
Sbjct: 267  ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGR 326

Query: 600  QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
            +IH  +VR  L  NL + N LI MY KC  L  AR V D M+ RDVVSW SM++ +   G
Sbjct: 327  RIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNG 386

Query: 780  RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
            +  DA+ +   M+   + P++    S+  A ++    +    R  F  M  +  +   + 
Sbjct: 387  KGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEG--RYYFKLMTEECKIVPRIE 444

Query: 960  IAICVNNSL--PTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
              +C+ + L    +  E +  I+   +EP+     ++L AC
Sbjct: 445  HFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC 485


>emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  360 bits (923), Expect = 4e-97
 Identities = 182/279 (65%), Positives = 224/279 (80%)
 Frame = +3

Query: 240  LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419
            LC +ILD  PD+  LKKLH+++ +   LHSNPS+GIKLMRAY+  GEP +T  +FDEIP 
Sbjct: 1029 LCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPK 1088

Query: 420  ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
              KN+VFFNVMIRSYVNN +Y +ALLV+ NM  +G+ PD+YT+PCVLKA S S++L VG+
Sbjct: 1089 --KNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGM 1146

Query: 600  QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
            QIHAA+VR GLD N+FVGNGLI+MYGKC  L +A RVLD M  RDVVSWNS+VAG A+ G
Sbjct: 1147 QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNG 1206

Query: 780  RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
            +FDDALEVCKEME   +KP+AGTMASL PAVTNT   NV FV+EMF K+A K LVS+NVM
Sbjct: 1207 QFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVM 1266

Query: 960  IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
            IA+ +NNS+P EAV+IF Q+E   ++PD ++IASVLPAC
Sbjct: 1267 IAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 1305



 Score =  107 bits (266), Expect = 7e-21
 Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 2/221 (0%)
 Frame = +3

Query: 420  ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
            A+K++V +NVMI  Y+NN M  EA+ +++ M  + V PD  +   VL AC     L +G 
Sbjct: 1256 ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGR 1315

Query: 600  QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
            +IH  +VR  L  NL + N LI MY KC  L  AR V D M+ RDVVSW SM++ +   G
Sbjct: 1316 RIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNG 1375

Query: 780  RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
            +  DA+ +   M+   + P++    S+  A ++    +    R  F  M  +  +   + 
Sbjct: 1376 KGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEG--RYYFKLMTEECKIVPRIE 1433

Query: 960  IAICVNNSL--PTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
              +C+ + L    +  E +  I+   +EP+     ++L AC
Sbjct: 1434 HFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC 1474


>ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223547518|gb|EEF49013.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 660

 Score =  347 bits (890), Expect = 3e-93
 Identities = 176/278 (63%), Positives = 219/278 (78%)
 Frame = +3

Query: 240  LCNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPA 419
            LCN+ILD  PD+ TLKKLH +VL   +L  NPS+GIKLMR Y++ GEP     +FDEI  
Sbjct: 23   LCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEI-- 80

Query: 420  ADKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGL 599
             DKN+VFFNVMIRSYVNN +Y +ALLVY  M+  G VPD YT+PCVLKA S SD+L VGL
Sbjct: 81   TDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGL 140

Query: 600  QIHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKG 779
            QIH A+++ GLD NL+VGNGLIAMYGKC  L +A++VLD +  RDVVSWNSMV+ +AQ G
Sbjct: 141  QIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNG 200

Query: 780  RFDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVM 959
            RF+DALE+C+EME   +KPN  TMASL PAVTNT+S NV +V+EMF K+  K ++S+NVM
Sbjct: 201  RFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVM 260

Query: 960  IAICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPA 1073
            IA+ VNNS+P EAV ++SQ+E+ G+EPD V+I SVLPA
Sbjct: 261  IAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPA 298



 Score =  100 bits (248), Expect = 8e-19
 Identities = 75/219 (34%), Positives = 109/219 (49%), Gaps = 2/219 (0%)
 Frame = +3

Query: 426  KNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQI 605
            K+++ +NVMI  YVNN M  EA+++Y  M   GV PD  +   VL A      L +G ++
Sbjct: 252  KSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRV 311

Query: 606  HAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGRF 785
            H    R  L  NL + N LI MY KC  L DAR V + M+ RDVVSW S+++ + + G+ 
Sbjct: 312  HKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQG 371

Query: 786  DDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVMIA 965
             DA+ V  EM    + P++    S+  A ++  +  +   R  FN MA   +       A
Sbjct: 372  RDAVAVFAEMRNSGLNPDSIAFVSVLAACSH--AGLLDDGRYYFNLMAECGITPKLEHFA 429

Query: 966  ICVNNSL--PTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
             CV + L    +  E +  I    LEPD      +L AC
Sbjct: 430  -CVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSAC 467


>ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  332 bits (850), Expect = 1e-88
 Identities = 165/278 (59%), Positives = 209/278 (75%)
 Frame = +3

Query: 243  CNKILDGCPDVLTLKKLHAQVLVIDHLHSNPSIGIKLMRAYSSFGEPKTTWKVFDEIPAA 422
            C  ILD  P + TL KLH+++++ +HL  +P++ IKLMRAYS+ GE      +FD   + 
Sbjct: 41   CEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDR--SL 98

Query: 423  DKNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQ 602
            +KN+VFFNVMIRSYVNN +Y EAL ++  M      PD+YTFPCVLKACS  DNL+VGLQ
Sbjct: 99   EKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQ 158

Query: 603  IHAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGR 782
            +H AIV+ GLD NLF+GN L+AMYGKC  L +AR+VLD M  RDVVSWNSMVAG+AQ G+
Sbjct: 159  VHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQ 218

Query: 783  FDDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVMI 962
            FDDALE+CKEM++  +  +AGTMASL P V  TS  NVQ++  MF +M  K L+S+NVMI
Sbjct: 219  FDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMI 278

Query: 963  AICVNNSLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
            AI VNNS+P EAV +F Q+E  G++PD VTIAS+LPAC
Sbjct: 279  AIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316



 Score =  107 bits (266), Expect = 7e-21
 Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 2/219 (0%)
 Frame = +3

Query: 426  KNIVFFNVMIRSYVNNCMYGEALLVYMNMWRYGVVPDNYTFPCVLKACSVSDNLKVGLQI 605
            KN++ +NVMI  YVNN M  EA+ +++ M   G+ PD  T   +L AC     L +G ++
Sbjct: 269  KNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRL 328

Query: 606  HAAIVRAGLDFNLFVGNGLIAMYGKCDRLGDARRVLDGMRQRDVVSWNSMVAGFAQKGRF 785
            H  I +  L  NL + N L+ MY KC  L +AR V D MR RDVVSW SM++ + + G+ 
Sbjct: 329  HKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQG 388

Query: 786  DDALEVCKEMETQLVKPNAGTMASLFPAVTNTSSANVQFVREMFNKMAMKELVSYNVMIA 965
             DA+ +  +M      P++    S+  A ++T   +    R  F  M  +  +   +   
Sbjct: 389  YDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQG--RHYFRMMTEQYGIVPRIEHF 446

Query: 966  ICVNN--SLPTEAVEIFSQIESKGLEPDPVTIASVLPAC 1076
             C+ +      E  E +S I+   +EP+     ++L AC
Sbjct: 447  ACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC 485


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