BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019536
         (206 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002297715.1| predicted protein [Populus trichocarpa] gi|2...    70   1e-10
ref|XP_002271836.1| PREDICTED: uncharacterized protein LOC100241...    70   2e-10
gb|AFK44987.1| unknown [Lotus japonicus]                               69   4e-10
ref|XP_002871294.1| mitochondrial transcription termination fact...    69   5e-10
ref|NP_568185.1| Mitochondrial transcription termination factor ...    69   5e-10

>ref|XP_002297715.1| predicted protein [Populus trichocarpa]
           gi|224053186|ref|XP_002297717.1| predicted protein
           [Populus trichocarpa] gi|222844973|gb|EEE82520.1|
           predicted protein [Populus trichocarpa]
           gi|222844975|gb|EEE82522.1| predicted protein [Populus
           trichocarpa]
          Length = 386

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 32/66 (48%), Positives = 42/66 (63%)
 Frame = +2

Query: 8   LKKMGFSPSSKVFISGFRVLSGMKKSTWDAKLEVYKSFGWSEDEVLCVFKKQPLIMAASV 187
           +K +G  P + VF+   RV+ GM +STW  K+E  KS GW+EDEVL  FK+ P I+A S 
Sbjct: 227 VKNLGLEPKAPVFVHALRVMIGMSESTWKRKIEYMKSLGWTEDEVLLTFKRNPDILACSE 286

Query: 188 KKINAA 205
            KI  A
Sbjct: 287 DKIGRA 292


>ref|XP_002271836.1| PREDICTED: uncharacterized protein LOC100241175 [Vitis vinifera]
          Length = 410

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 30/64 (46%), Positives = 44/64 (68%)
 Frame = +2

Query: 5   QLKKMGFSPSSKVFISGFRVLSGMKKSTWDAKLEVYKSFGWSEDEVLCVFKKQPLIMAAS 184
           ++ +MGF P + VFI   +V  GM KSTW+ K+EVY+ +GWS DE++ +F+  P  M+ S
Sbjct: 240 KVMEMGFDPLTVVFIKAIQVFGGMSKSTWEQKMEVYRRWGWSNDEIVLLFRAFPACMSLS 299

Query: 185 VKKI 196
            KKI
Sbjct: 300 EKKI 303


>gb|AFK44987.1| unknown [Lotus japonicus]
          Length = 387

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 30/67 (44%), Positives = 46/67 (68%)
 Frame = +2

Query: 2   LQLKKMGFSPSSKVFISGFRVLSGMKKSTWDAKLEVYKSFGWSEDEVLCVFKKQPLIMAA 181
           +++K +GF PS   F+S  RV  G+ KS WDAKL+ +K++G  ED +L  F++ P +M  
Sbjct: 233 VEVKGLGFHPSKSHFVSALRVKRGISKSPWDAKLDAFKTWGCPEDAILDAFRRYPHMMLY 292

Query: 182 SVKKINA 202
           S+KK+NA
Sbjct: 293 SIKKVNA 299


>ref|XP_002871294.1| mitochondrial transcription termination factor family protein
           [Arabidopsis lyrata subsp. lyrata]
           gi|297317131|gb|EFH47553.1| mitochondrial transcription
           termination factor family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 404

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
 Frame = +2

Query: 5   QLKKMGFSPSSKVFISGFRVLSGM-KKSTWDAKLEVYKSFGWSEDEVLCVFKKQPLIMAA 181
           Q ++MGF+P    F+     LSG   KS WD   EVY+ +GWSED+++C FKK P  M  
Sbjct: 249 QAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMML 308

Query: 182 SVKKIN 199
           S +KIN
Sbjct: 309 SERKIN 314


>ref|NP_568185.1| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana]
           gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein
           [Arabidopsis thaliana] gi|6562304|emb|CAB62602.1|
           putative protein [Arabidopsis thaliana]
           gi|10176724|dbj|BAB09954.1| unnamed protein product
           [Arabidopsis thaliana] gi|17104655|gb|AAL34216.1|
           unknown protein [Arabidopsis thaliana]
           gi|21592327|gb|AAM64278.1| unknown [Arabidopsis
           thaliana] gi|332003836|gb|AED91219.1| Mitochondrial
           transcription termination factor family protein
           [Arabidopsis thaliana]
          Length = 405

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
 Frame = +2

Query: 5   QLKKMGFSPSSKVFISGFRVLSGM-KKSTWDAKLEVYKSFGWSEDEVLCVFKKQPLIMAA 181
           Q ++MGF+P    F+     LSG   KS WD   EVY+ +GWSED+++C FKK P  M  
Sbjct: 250 QAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMML 309

Query: 182 SVKKIN 199
           S +KIN
Sbjct: 310 SERKIN 315