BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019516
         (286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAL07975.1| Rar1 protein [Platanus x acerifolia]                   49   8e-08
gb|ACT98264.1| rar [Malus hupehensis]                                  41   8e-07

>emb|CAL07975.1| Rar1 protein [Platanus x acerifolia]
          Length = 133

 Score = 48.9 bits (115), Expect(2) = 8e-08
 Identities = 26/49 (53%), Positives = 29/49 (59%)
 Frame = +2

Query: 140 GSQPKEENSKPLNAXXXXXXXXXXXXKHDPAPVKKIVGLNEP*TCRNKG 286
           GSQP+E NSKP NA               PAP KKIV LN+P TC+NKG
Sbjct: 26  GSQPREVNSKPSNAVDVPAESNAGV--QTPAPAKKIVDLNQPQTCKNKG 72



 Score = 32.3 bits (72), Expect(2) = 8e-08
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 15 SSNVACSRCKQGFICSEH 68
          SS + CSRC+Q F CS+H
Sbjct: 8  SSKLTCSRCRQNFFCSDH 25


>gb|ACT98264.1| rar [Malus hupehensis]
          Length = 225

 Score = 41.2 bits (95), Expect(2) = 8e-07
 Identities = 21/49 (42%), Positives = 26/49 (53%)
 Frame = +2

Query: 140 GSQPKEENSKPLNAXXXXXXXXXXXXKHDPAPVKKIVGLNEP*TCRNKG 286
           G+Q KE  SKP+N             +   AP KKIV +N+P TC NKG
Sbjct: 116 GAQAKELKSKPVNVETTPIPESITDDQGTSAPPKKIVDINQPQTCMNKG 164



 Score = 36.6 bits (83), Expect(2) = 8e-07
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +3

Query: 12  ASSNVACSRCKQGFICSEH 68
           ASS  +CSRC+QGF CSEH
Sbjct: 97  ASSKQSCSRCRQGFFCSEH 115