BLASTX nr result
ID: Coptis25_contig00019516
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00019516 (286 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAL07975.1| Rar1 protein [Platanus x acerifolia] 49 8e-08 gb|ACT98264.1| rar [Malus hupehensis] 41 8e-07 >emb|CAL07975.1| Rar1 protein [Platanus x acerifolia] Length = 133 Score = 48.9 bits (115), Expect(2) = 8e-08 Identities = 26/49 (53%), Positives = 29/49 (59%) Frame = +2 Query: 140 GSQPKEENSKPLNAXXXXXXXXXXXXKHDPAPVKKIVGLNEP*TCRNKG 286 GSQP+E NSKP NA PAP KKIV LN+P TC+NKG Sbjct: 26 GSQPREVNSKPSNAVDVPAESNAGV--QTPAPAKKIVDLNQPQTCKNKG 72 Score = 32.3 bits (72), Expect(2) = 8e-08 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +3 Query: 15 SSNVACSRCKQGFICSEH 68 SS + CSRC+Q F CS+H Sbjct: 8 SSKLTCSRCRQNFFCSDH 25 >gb|ACT98264.1| rar [Malus hupehensis] Length = 225 Score = 41.2 bits (95), Expect(2) = 8e-07 Identities = 21/49 (42%), Positives = 26/49 (53%) Frame = +2 Query: 140 GSQPKEENSKPLNAXXXXXXXXXXXXKHDPAPVKKIVGLNEP*TCRNKG 286 G+Q KE SKP+N + AP KKIV +N+P TC NKG Sbjct: 116 GAQAKELKSKPVNVETTPIPESITDDQGTSAPPKKIVDINQPQTCMNKG 164 Score = 36.6 bits (83), Expect(2) = 8e-07 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = +3 Query: 12 ASSNVACSRCKQGFICSEH 68 ASS +CSRC+QGF CSEH Sbjct: 97 ASSKQSCSRCRQGFFCSEH 115