BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019443
         (481 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   226   1e-57
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           226   1e-57
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]            221   6e-56
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]   219   2e-55
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         216   1e-54

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  226 bits (577), Expect = 1e-57
 Identities = 107/158 (67%), Positives = 127/158 (80%)
 Frame = +3

Query: 3    CPKGEHEQSQMEKILYAFAVGSLMYAMVYTRPDIAFTIGVVSRFLSNPEKEHWKGVKWIL 182
            CP    E+  M K+ Y+ AVGSLMYAMV TRPDIA  +GVVSRFL NP KEHW+ VKWIL
Sbjct: 1096 CPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWIL 1155

Query: 183  RYLKGTSKSCLCFGGSKPLLEGYTDADIAGDVDLMKSTSGYLVTFARGAVSWQSKL*KCV 362
            RYL+GT+  CLCFGGS P+L+GYTDAD+AGD+D  KS++GYL TF+ GA+SWQSKL KCV
Sbjct: 1156 RYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCV 1215

Query: 363  ALSTTEAEYITVTECCKELLWMKRFYDELGLK*KQFVV 476
            ALSTTEAEYI  TE  KE++W+KRF  ELGL  K++VV
Sbjct: 1216 ALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVV 1253


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  226 bits (576), Expect = 1e-57
 Identities = 109/149 (73%), Positives = 122/149 (81%)
 Frame = +3

Query: 6    PKGEHEQSQMEKILYAFAVGSLMYAMVYTRPDIAFTIGVVSRFLSNPEKEHWKGVKWILR 185
            P  + E+ +ME+I YA AVGSLMYAMV TRPDIA  +GVVSRFLSNP KEHW  VKWILR
Sbjct: 1098 PSTDDERRKMERIPYASAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKWILR 1157

Query: 186  YLKGTSKSCLCFGGSKPLLEGYTDADIAGDVDLMKSTSGYLVTFARGAVSWQSKL*KCVA 365
            YL+GTSK CLCFG   P+L GYTDAD+AGDVD  KSTSGYL+ F+ GAVSWQSKL KCVA
Sbjct: 1158 YLRGTSKLCLCFGEDNPVLVGYTDADMAGDVDSRKSTSGYLINFSGGAVSWQSKLQKCVA 1217

Query: 366  LSTTEAEYITVTECCKELLWMKRFYDELG 452
            LSTTEAE+I  TE CKEL+WMK+F  ELG
Sbjct: 1218 LSTTEAEFIAATEACKELIWMKKFLTELG 1246


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score =  221 bits (562), Expect = 6e-56
 Identities = 105/158 (66%), Positives = 123/158 (77%)
 Frame = +3

Query: 3   CPKGEHEQSQMEKILYAFAVGSLMYAMVYTRPDIAFTIGVVSRFLSNPEKEHWKGVKWIL 182
           CP  E E+  M  I Y+  VGSLMYAMV TRPDIA  +G+VSR+L+NP K HW+ VKWIL
Sbjct: 456 CPTTEKEKESMSHIPYSSVVGSLMYAMVCTRPDIAHAVGLVSRYLANPSKVHWEAVKWIL 515

Query: 183 RYLKGTSKSCLCFGGSKPLLEGYTDADIAGDVDLMKSTSGYLVTFARGAVSWQSKL*KCV 362
           RYL+GTS   LCFGG +P+LEG+TDAD+AGD+D  KSTSGYL  FARGA+SWQSKL KCV
Sbjct: 516 RYLRGTSNLSLCFGGGEPILEGFTDADMAGDLDNRKSTSGYLFKFARGAISWQSKLQKCV 575

Query: 363 ALSTTEAEYITVTECCKELLWMKRFYDELGLK*KQFVV 476
           ALSTTE EYI   E  KE+LW+KRF  ELGLK  ++VV
Sbjct: 576 ALSTTEVEYIAAVEASKEMLWLKRFLQELGLKQSEYVV 613


>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score =  219 bits (558), Expect = 2e-55
 Identities = 105/157 (66%), Positives = 125/157 (79%)
 Frame = +3

Query: 6    PKGEHEQSQMEKILYAFAVGSLMYAMVYTRPDIAFTIGVVSRFLSNPEKEHWKGVKWILR 185
            P  + E+  M ++ YA A+GSLMYAMV TRPDIA+ +GVVSRFLSNP + HW+ VKWI+R
Sbjct: 1068 PSTDKEKEDMRRVPYASAIGSLMYAMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMR 1127

Query: 186  YLKGTSKSCLCFGGSKPLLEGYTDADIAGDVDLMKSTSGYLVTFARGAVSWQSKL*KCVA 365
            YL+GTSK  L FG  KP+L GYTD+D+AGDVD  KSTSGYL+TF+ GAVSWQS+L KCVA
Sbjct: 1128 YLRGTSKLKLTFGSGKPILVGYTDSDMAGDVDNRKSTSGYLMTFSGGAVSWQSRLQKCVA 1187

Query: 366  LSTTEAEYITVTECCKELLWMKRFYDELGLK*KQFVV 476
            LSTTEAEYI   E CKELLWMK F  ELG K +++VV
Sbjct: 1188 LSTTEAEYIAAVEACKELLWMKCFMQELGFKQQRYVV 1224


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  216 bits (551), Expect = 1e-54
 Identities = 101/150 (67%), Positives = 120/150 (80%)
 Frame = +3

Query: 3    CPKGEHEQSQMEKILYAFAVGSLMYAMVYTRPDIAFTIGVVSRFLSNPEKEHWKGVKWIL 182
            CP  E E+ +M+++ Y+ AVGSLMYAMV TRPDIA  +GVVSRFLSNP +EHW  VKWIL
Sbjct: 1094 CPSSEKEKEEMQRVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGREHWDAVKWIL 1153

Query: 183  RYLKGTSKSCLCFGGSKPLLEGYTDADIAGDVDLMKSTSGYLVTFARGAVSWQSKL*KCV 362
            RYL+GTS   LCFG  KP+L GYTD+D+AGD+D  KSTSGYL+T+A GAVSWQS+L KCV
Sbjct: 1154 RYLRGTSSLSLCFGTGKPILTGYTDSDMAGDIDTRKSTSGYLITYAGGAVSWQSRLQKCV 1213

Query: 363  ALSTTEAEYITVTECCKELLWMKRFYDELG 452
             LSTTEAE+I   E  KE+LWMK+F  ELG
Sbjct: 1214 DLSTTEAEFIASVEASKEMLWMKKFLQELG 1243