BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019437
         (453 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   179   2e-43
ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...   174   9e-42
emb|CBI36131.3| unnamed protein product [Vitis vinifera]              174   9e-42
ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat...   169   3e-40
ref|XP_002516017.1| pentatricopeptide repeat-containing protein,...   158   4e-37

>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  179 bits (454), Expect = 2e-43
 Identities = 82/119 (68%), Positives = 101/119 (84%)
 Frame = -3

Query: 358 YYLPLLQSCIKKRAIEPGKQLHAHLLITGIGLNTIMATKLVNLYCVCSSLNNAYNLFDRI 179
           YY  LLQSC+ ++AIEPGKQLHA +   GI  N ++ATKLVNLYC+C+SL NA+ LFDRI
Sbjct: 3   YYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRI 62

Query: 178 SDRKNLFLWNIMIRAFAWDGPHEVAISIYYQMIEYGLVPDNFTYPFVLKACSTLSALEQ 2
           S R NLFLWN+MIR +AW+GP+E+AIS+YYQM +YGLVPD FT+PFVLKACS LSA+E+
Sbjct: 63  SKR-NLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEE 120



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/115 (24%), Positives = 62/115 (53%)
 Frame = -3

Query: 346 LLQSCIKKRAIEPGKQLHAHLLITGIGLNTIMATKLVNLYCVCSSLNNAYNLFDRISDRK 167
           +L++C    A+E GK++H  ++ +G+  +  +   L+++Y  C  + +A  +FD+I D +
Sbjct: 108 VLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKI-DER 166

Query: 166 NLFLWNIMIRAFAWDGPHEVAISIYYQMIEYGLVPDNFTYPFVLKACSTLSALEQ 2
           ++  WN M+  ++ +G  + ++++   M   GL P   T+   + A +    L Q
Sbjct: 167 DVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQ 221


>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  174 bits (440), Expect = 9e-42
 Identities = 79/139 (56%), Positives = 107/139 (76%)
 Frame = -3

Query: 421 RTVVTYSNHQKPFTPISQTNQYYLPLLQSCIKKRAIEPGKQLHAHLLITGIGLNTIMATK 242
           + + + SN     T ++ T   Y  LLQSCI ++AI+PGKQLHA + + G G +T++ATK
Sbjct: 56  KAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATK 115

Query: 241 LVNLYCVCSSLNNAYNLFDRISDRKNLFLWNIMIRAFAWDGPHEVAISIYYQMIEYGLVP 62
           LVNLYCVC SL++A  LFDRI  + N+FLWN++IR +AW+GP+E A+ +YYQM +YGLVP
Sbjct: 116 LVNLYCVCDSLSSARLLFDRIP-KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVP 174

Query: 61  DNFTYPFVLKACSTLSALE 5
           DNFT+PFVLKAC+ LSA+E
Sbjct: 175 DNFTFPFVLKACAALSAIE 193



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 34/115 (29%), Positives = 64/115 (55%)
 Frame = -3

Query: 346 LLQSCIKKRAIEPGKQLHAHLLITGIGLNTIMATKLVNLYCVCSSLNNAYNLFDRISDRK 167
           +L++C    AIE G+++H H++ TG   +  +   L+++Y  C  + +A  +FD+I  R 
Sbjct: 182 VLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR- 240

Query: 166 NLFLWNIMIRAFAWDGPHEVAISIYYQMIEYGLVPDNFTYPFVLKACSTLSALEQ 2
           +  LWN M+ A++ +G  +  +S+  +M+  GL P   T    + A +  +AL Q
Sbjct: 241 DAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQ 295


>emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  174 bits (440), Expect = 9e-42
 Identities = 79/139 (56%), Positives = 107/139 (76%)
 Frame = -3

Query: 421 RTVVTYSNHQKPFTPISQTNQYYLPLLQSCIKKRAIEPGKQLHAHLLITGIGLNTIMATK 242
           + + + SN     T ++ T   Y  LLQSCI ++AI+PGKQLHA + + G G +T++ATK
Sbjct: 56  KAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATK 115

Query: 241 LVNLYCVCSSLNNAYNLFDRISDRKNLFLWNIMIRAFAWDGPHEVAISIYYQMIEYGLVP 62
           LVNLYCVC SL++A  LFDRI  + N+FLWN++IR +AW+GP+E A+ +YYQM +YGLVP
Sbjct: 116 LVNLYCVCDSLSSARLLFDRIP-KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVP 174

Query: 61  DNFTYPFVLKACSTLSALE 5
           DNFT+PFVLKAC+ LSA+E
Sbjct: 175 DNFTFPFVLKACAALSAIE 193



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
 Frame = -3

Query: 346 LLQSCIKKRAIEPGKQLHAHLLITGIGLNTIMATKLVNLYCVCSSLNNAYNLFDRISDRK 167
           +L++C    AIE G+++H H++ TG   +  +   L+++Y  C  + +A  +FD+I  R 
Sbjct: 182 VLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRD 241

Query: 166 NLFL--WNIMIRAFAWDGPHEVAISIYYQMIEYGLVPDNFTYPFVLKACSTLSALEQ 2
            + +  WN MI  +A  G    A+ ++ +M      PD+ T+  VL ACS    LE+
Sbjct: 242 AVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEE 297


>ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  169 bits (427), Expect = 3e-40
 Identities = 84/146 (57%), Positives = 107/146 (73%), Gaps = 3/146 (2%)
 Frame = -3

Query: 436 FIFLYRTVVTY--SNHQKPFTPISQTNQYYLP-LLQSCIKKRAIEPGKQLHAHLLITGIG 266
           + FL+++  T     H+    P S +N YY   LL+SCI  +A+EPGKQLHA L   GI 
Sbjct: 31  YYFLHQSFATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIA 90

Query: 265 LNTIMATKLVNLYCVCSSLNNAYNLFDRISDRKNLFLWNIMIRAFAWDGPHEVAISIYYQ 86
            N  +ATKLVN Y VC+SL NA++LFD+I  + NLFLWN++IRA+AW+GPHE AIS+Y+Q
Sbjct: 91  YNLDLATKLVNFYSVCNSLRNAHHLFDKIP-KGNLFLWNVLIRAYAWNGPHETAISLYHQ 149

Query: 85  MIEYGLVPDNFTYPFVLKACSTLSAL 8
           M+EYGL PDNFT PFVLKACS LS +
Sbjct: 150 MLEYGLKPDNFTLPFVLKACSALSTI 175


>ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544922|gb|EEF46437.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  158 bits (400), Expect = 4e-37
 Identities = 73/123 (59%), Positives = 95/123 (77%)
 Frame = -3

Query: 373 SQTNQYYLPLLQSCIKKRAIEPGKQLHAHLLITGIGLNTIMATKLVNLYCVCSSLNNAYN 194
           +QT  YY   LQSCI ++A+ PGKQLHA L   G+  + ++A KLVNLYC+C+SL  A  
Sbjct: 84  NQTPSYYAAFLQSCITQKALIPGKQLHASLCHVGLQFDRVLAPKLVNLYCICNSLCEARL 143

Query: 193 LFDRISDRKNLFLWNIMIRAFAWDGPHEVAISIYYQMIEYGLVPDNFTYPFVLKACSTLS 14
           LFD+I  R NLFLWN++IR +AW GP+E +I +YY++ +YGLVPDNFT+PFVLKACS LS
Sbjct: 144 LFDKIPKR-NLFLWNVLIRGYAWYGPYEASIQLYYKIFDYGLVPDNFTFPFVLKACSALS 202

Query: 13  ALE 5
           A+E
Sbjct: 203 AIE 205