BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019235
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001779005.1| predicted protein [Physcomitrella patens sub...   102   3e-20
ref|XP_001785319.1| predicted protein [Physcomitrella patens sub...   102   4e-20
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...   100   1e-19
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   100   2e-19
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...    99   5e-19

>ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
            gi|162669567|gb|EDQ56151.1| predicted protein
            [Physcomitrella patens subsp. patens]
          Length = 1646

 Score =  102 bits (254), Expect = 3e-20
 Identities = 55/95 (57%), Positives = 68/95 (71%)
 Frame = -2

Query: 287  DGLTCICSDDNAEKLILRIRIINDESPIGKDDPADNDVVLLEKIESVLLADMALQGIPDI 108
            D LTCI +DDNAEKLILRIRI+NDE+P G+      D V L+KIES +L +MAL+GIPDI
Sbjct: 1227 DDLTCIFNDDNAEKLILRIRIMNDEAPKGEATEQSEDDVFLKKIESNMLTEMALRGIPDI 1286

Query: 107  SKVFIKQEKGNRYHXXXXXXXXXXXEWMVDTEGVN 3
             KVFIK++K NR+            EW++DTEGVN
Sbjct: 1287 RKVFIKEDKKNRF--DENVAFEPEKEWILDTEGVN 1319


>ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
            gi|162663074|gb|EDQ49860.1| predicted protein
            [Physcomitrella patens subsp. patens]
          Length = 1742

 Score =  102 bits (253), Expect = 4e-20
 Identities = 55/95 (57%), Positives = 68/95 (71%)
 Frame = -2

Query: 287  DGLTCICSDDNAEKLILRIRIINDESPIGKDDPADNDVVLLEKIESVLLADMALQGIPDI 108
            D LTCI +DDNAEKLILRIRI+NDE+P G+      D V L+KIES +L +MAL+GIPDI
Sbjct: 1242 DDLTCIFNDDNAEKLILRIRIMNDEAPKGEMTEQSEDDVFLKKIESNMLTEMALRGIPDI 1301

Query: 107  SKVFIKQEKGNRYHXXXXXXXXXXXEWMVDTEGVN 3
             KVFIK++K NR+            EW++DTEGVN
Sbjct: 1302 RKVFIKEDKKNRF--DENLAFVVEQEWVLDTEGVN 1334


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score =  100 bits (250), Expect = 1e-19
 Identities = 56/96 (58%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
 Frame = -2

Query: 287  DGLTCICSDDNAEKLILRIRIINDESPIGK-DDPADNDVVLLEKIESVLLADMALQGIPD 111
            D LTCI +DDNAEKLILRIRI+NDE+P G+ +D +  D V L+KIES +L +MAL+GIPD
Sbjct: 1239 DDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPD 1298

Query: 110  ISKVFIKQEKGNRYHXXXXXXXXXXXEWMVDTEGVN 3
            I+KVFIKQ K +++            EWM+DTEGVN
Sbjct: 1299 INKVFIKQSKVSKF--DENEGFKTIEEWMLDTEGVN 1332


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 56/96 (58%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
 Frame = -2

Query: 287  DGLTCICSDDNAEKLILRIRIINDESPIGK-DDPADNDVVLLEKIESVLLADMALQGIPD 111
            D LTCI +DDNAEKLILRIRI+NDE+P G+  D +  D V L+KIES +L +MAL+GIPD
Sbjct: 1239 DDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPD 1298

Query: 110  ISKVFIKQEKGNRYHXXXXXXXXXXXEWMVDTEGVN 3
            I+KVFIK  K N++            EWM+DTEGVN
Sbjct: 1299 INKVFIKSGKVNKF--DESEGFKPEVEWMLDTEGVN 1332


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 2/97 (2%)
 Frame = -2

Query: 287  DGLTCICSDDNAEKLILRIRIINDESPIGK--DDPADNDVVLLEKIESVLLADMALQGIP 114
            D LTCI +DDNAEKLILRIRI+NDE+P G+  D+ A++D V L+KIES +L +MAL+GIP
Sbjct: 1239 DDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDD-VFLKKIESNMLTEMALRGIP 1297

Query: 113  DISKVFIKQEKGNRYHXXXXXXXXXXXEWMVDTEGVN 3
            DI+KVFIK  K N++            EWM+DTEGVN
Sbjct: 1298 DINKVFIKCGKVNKF--DENEGFKPEMEWMLDTEGVN 1332