BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019234
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   195   3e-48
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...   194   8e-48
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...   193   1e-47
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   193   1e-47
ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [S...   190   1e-46

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score =  195 bits (496), Expect = 3e-48
 Identities = 98/114 (85%), Positives = 105/114 (92%), Gaps = 2/114 (1%)
 Frame = +2

Query: 2    TFHYAGVSSKNVTLGVPRLREIINVAKKIKTPSLSVYLNPE--KTKEKAKNVQCALEYTT 175
            TFHYAGVS+KNVTLGVPRLREIINVAKKIKTPSLSVYL P+  KTKE+AKNVQCALEYTT
Sbjct: 1102 TFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTT 1161

Query: 176  LRTVTLATEMWYDPHIMTTIIEEDLDFVTSYYEMPAEEVDPEKISPWLLRIELN 337
            LR+VT ATE+WYDP  M+TIIEED+DFV SYYEMP EEV PEKISPWLLRIELN
Sbjct: 1162 LRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEVAPEKISPWLLRIELN 1215


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score =  194 bits (492), Expect = 8e-48
 Identities = 96/114 (84%), Positives = 105/114 (92%), Gaps = 2/114 (1%)
 Frame = +2

Query: 2    TFHYAGVSSKNVTLGVPRLREIINVAKKIKTPSLSVYLNPE--KTKEKAKNVQCALEYTT 175
            TFHYAGVS+KNVTLGVPRLREIINVAKKIKTPSLS++L PE  KTKE+AKNVQCALEYTT
Sbjct: 1102 TFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLIPECNKTKERAKNVQCALEYTT 1161

Query: 176  LRTVTLATEMWYDPHIMTTIIEEDLDFVTSYYEMPAEEVDPEKISPWLLRIELN 337
            LR+VT ATE+WYDP  M+TIIEED+DFV SYYEMP EE+ PEKISPWLLRIELN
Sbjct: 1162 LRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEISPEKISPWLLRIELN 1215


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score =  193 bits (490), Expect = 1e-47
 Identities = 96/114 (84%), Positives = 104/114 (91%), Gaps = 2/114 (1%)
 Frame = +2

Query: 2    TFHYAGVSSKNVTLGVPRLREIINVAKKIKTPSLSVYLNPE--KTKEKAKNVQCALEYTT 175
            TFHYAGVS+KNVTLGVPRLREIINVAK+IKTPSLSVYL PE  KTKE+AK VQCALEYTT
Sbjct: 1102 TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT 1161

Query: 176  LRTVTLATEMWYDPHIMTTIIEEDLDFVTSYYEMPAEEVDPEKISPWLLRIELN 337
            LR+VT ATE+WYDP  M+TIIEED+DFV SYYEMP EE+ PEKISPWLLRIELN
Sbjct: 1162 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELN 1215


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score =  193 bits (490), Expect = 1e-47
 Identities = 96/114 (84%), Positives = 104/114 (91%), Gaps = 2/114 (1%)
 Frame = +2

Query: 2    TFHYAGVSSKNVTLGVPRLREIINVAKKIKTPSLSVYLNPE--KTKEKAKNVQCALEYTT 175
            TFHYAGVS+KNVTLGVPRLREIINVAK+IKTPSLSVYL PE  KTKE+AK VQCALEYTT
Sbjct: 1102 TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT 1161

Query: 176  LRTVTLATEMWYDPHIMTTIIEEDLDFVTSYYEMPAEEVDPEKISPWLLRIELN 337
            LR+VT ATE+WYDP  M+TIIEED+DFV SYYEMP EE+ PEKISPWLLRIELN
Sbjct: 1162 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELN 1215


>ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
            gi|241936684|gb|EES09829.1| hypothetical protein
            SORBIDRAFT_05g019520 [Sorghum bicolor]
          Length = 1874

 Score =  190 bits (482), Expect = 1e-46
 Identities = 95/114 (83%), Positives = 104/114 (91%), Gaps = 2/114 (1%)
 Frame = +2

Query: 2    TFHYAGVSSKNVTLGVPRLREIINVAKKIKTPSLSVYLNPE--KTKEKAKNVQCALEYTT 175
            TFH+AGVS+KNVTLGVPRLREIINVAKKIKTPSLSVYL PE  KTKE AK+VQCALEYTT
Sbjct: 1102 TFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKTKELAKSVQCALEYTT 1161

Query: 176  LRTVTLATEMWYDPHIMTTIIEEDLDFVTSYYEMPAEEVDPEKISPWLLRIELN 337
            LR+VT ATE+WYDP  M TIIEEDL+FV SYYEMP E++DP+KISPWLLRIELN
Sbjct: 1162 LRSVTHATEVWYDPDPMGTIIEEDLEFVLSYYEMPDEDIDPDKISPWLLRIELN 1215