BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019181
         (507 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containi...   118   6e-25
emb|CBI30711.3| unnamed protein product [Vitis vinifera]              118   6e-25
ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
ref|XP_002522236.1| pentatricopeptide repeat-containing protein,...   111   5e-23
ref|XP_003608008.1| Pentatricopeptide repeat-containing protein ...   106   2e-21

>ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  118 bits (295), Expect = 6e-25
 Identities = 55/99 (55%), Positives = 77/99 (77%)
 Frame = -2

Query: 299 TGPNKEICRLCELGNLQKAVFTLSNTCTSEIEVSTYCSLLQLCAEQKSLQHGKKVHSVIN 120
           T  N EICR CELGNL++A+  ++ +   ++E+ TYCS+LQLCA+ KS+Q G+++HS+I 
Sbjct: 69  TDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 119 SSCNVVVLDSVLGSKLVFMYLNCGDLREGRRVFNRIKKE 3
           S  N V +D VLGSKLVFMY+ CGDLREGRR+F+++  E
Sbjct: 129 S--NDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165


>emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  118 bits (295), Expect = 6e-25
 Identities = 55/99 (55%), Positives = 77/99 (77%)
 Frame = -2

Query: 299 TGPNKEICRLCELGNLQKAVFTLSNTCTSEIEVSTYCSLLQLCAEQKSLQHGKKVHSVIN 120
           T  N EICR CELGNL++A+  ++ +   ++E+ TYCS+LQLCA+ KS+Q G+++HS+I 
Sbjct: 69  TDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 119 SSCNVVVLDSVLGSKLVFMYLNCGDLREGRRVFNRIKKE 3
           S  N V +D VLGSKLVFMY+ CGDLREGRR+F+++  E
Sbjct: 129 S--NDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165


>ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  114 bits (286), Expect = 6e-24
 Identities = 54/93 (58%), Positives = 76/93 (81%)
 Frame = -2

Query: 290 NKEICRLCELGNLQKAVFTLSNTCTSEIEVSTYCSLLQLCAEQKSLQHGKKVHSVINSSC 111
           N +IC+ CE+G+L+ A+  LS +  SE+E++TYCS+LQLCAE KSL+ GK+VHS+I+S  
Sbjct: 28  NAKICKFCEMGDLRNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISS-- 85

Query: 110 NVVVLDSVLGSKLVFMYLNCGDLREGRRVFNRI 12
           N + +D VLG+KLVFMY+NCGDL +GRR+F+ I
Sbjct: 86  NGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118


>ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538489|gb|EEF40094.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 640

 Score =  111 bits (278), Expect = 5e-23
 Identities = 54/96 (56%), Positives = 73/96 (76%)
 Frame = -2

Query: 290 NKEICRLCELGNLQKAVFTLSNTCTSEIEVSTYCSLLQLCAEQKSLQHGKKVHSVINSSC 111
           N++IC LCE+G+L+ A+  L     S I+ +TYCS+LQLCAE  SLQ GKKVHS I+SS 
Sbjct: 70  NRKICELCEVGSLKNAIELLDMYPKSNIDSNTYCSILQLCAELNSLQEGKKVHSFISSS- 128

Query: 110 NVVVLDSVLGSKLVFMYLNCGDLREGRRVFNRIKKE 3
             + +D +LG+KLVFMY+NCGD+REGR +F++I  E
Sbjct: 129 -GIFVDGLLGTKLVFMYVNCGDIREGRVIFDKIANE 163


>ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355509063|gb|AES90205.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  106 bits (264), Expect = 2e-21
 Identities = 52/106 (49%), Positives = 79/106 (74%), Gaps = 1/106 (0%)
 Frame = -2

Query: 317 NTIHPKT-GPNKEICRLCELGNLQKAVFTLSNTCTSEIEVSTYCSLLQLCAEQKSLQHGK 141
           NT H  T   N +I + CE+G+L+ A+  L+ + + E+ +++YCS+LQLCAE+KSL+ GK
Sbjct: 330 NTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGK 389

Query: 140 KVHSVINSSCNVVVLDSVLGSKLVFMYLNCGDLREGRRVFNRIKKE 3
           +VHSVI S  N + +D  LG+KLVFMY+NCGDL +GR++F++I  +
Sbjct: 390 RVHSVIIS--NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433