BLASTX nr result
ID: Coptis25_contig00019115
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00019115
(349 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containi... 156 2e-36
emb|CAN65544.1| hypothetical protein VITISV_018576 [Vitis vinifera] 156 2e-36
ref|XP_003604235.1| Pentatricopeptide repeat-containing protein ... 146 2e-33
ref|XP_002325518.1| predicted protein [Populus trichocarpa] gi|2... 146 2e-33
ref|XP_002528029.1| pentatricopeptide repeat-containing protein,... 145 4e-33
>ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Vitis vinifera]
Length = 725
Score = 156 bits (394), Expect = 2e-36
Identities = 72/115 (62%), Positives = 93/115 (80%)
Frame = -1
Query: 346 EALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLRRDFVSVPFVSAEIV 167
EA+ VFRSMQLSKHRPD V M+RIL +CG++ LK GKE+HG +L++DF S+PFVSAEI+
Sbjct: 541 EAVGVFRSMQLSKHRPDSVAMARILSICGELRVLKLGKEIHGQILKKDFESIPFVSAEII 600
Query: 166 KMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGF 2
KMYG G I KAKL F P+KGSM WTA+IEAYG+N+ +QDA++L+ M ++GF
Sbjct: 601 KMYGKFGAISKAKLAFKAIPAKGSMAWTAIIEAYGYNDLYQDAINLFHQMQSDGF 655
Score = 68.2 bits (165), Expect = 7e-10
Identities = 32/111 (28%), Positives = 63/111 (56%)
Frame = -1
Query: 349 DEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLRRDFVSVPFVSAEI 170
D+AL MQ RPD VT++ +L VC ++ L+ GKE+H + ++ F+ ++ +
Sbjct: 439 DQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVKNGFLPNVSIATSL 498
Query: 169 VKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLM 17
+ MY G ++ + +FD ++ ++WTA+I++Y N +A+ ++ M
Sbjct: 499 MVMYSKCGNLDYSFKLFDGMDARNVISWTAMIDSYVENGCLHEAVGVFRSM 549
Score = 65.9 bits (159), Expect = 3e-09
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Frame = -1
Query: 346 EALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLR-RDFVSVPFVSAEI 170
EAL R M+ P+ V M+ IL V G++G K G+EVH +V++ + + F+ + +
Sbjct: 338 EALEYLRWMRREGICPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTKSYSKQVFIQSAL 397
Query: 169 VKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGF 2
+ MY G++ + VF + + +++WTAL+ Y N R AL M GF
Sbjct: 398 IDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGRLDQALRSIAWMQQEGF 453
Score = 58.2 bits (139), Expect = 7e-07
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = -1
Query: 298 DPVTMSRILRVCGDMGELKFGKEVHGHVLRRDFVSVPFVSAEIVKMYGNSGEIEKAKLVF 119
+P T S +LR C + L GK++H H+ + F+ ++V MY + G +E A+ VF
Sbjct: 150 NPTTFSSLLRACVESKSLTHGKQIHVHIRINGLENNEFLRTKLVHMYTSCGSLEDARGVF 209
Query: 118 DTNPSKGSMTWTALIEAYGHNNR--HQDALDLYDLM 17
D SK TW AL+ + R +++AL Y M
Sbjct: 210 DGVSSKSVYTWNALLRGNVISGRRHYREALSTYSEM 245
>emb|CAN65544.1| hypothetical protein VITISV_018576 [Vitis vinifera]
Length = 664
Score = 156 bits (394), Expect = 2e-36
Identities = 72/115 (62%), Positives = 93/115 (80%)
Frame = -1
Query: 346 EALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLRRDFVSVPFVSAEIV 167
EA+ VFRSMQLSKHRPD V M+RIL +CG++ LK GKE+HG +L++DF S+PFVSAEI+
Sbjct: 480 EAVGVFRSMQLSKHRPDSVAMARILSICGELRVLKLGKEIHGQILKKDFESIPFVSAEII 539
Query: 166 KMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGF 2
KMYG G I KAKL F P+KGSM WTA+IEAYG+N+ +QDA++L+ M ++GF
Sbjct: 540 KMYGKFGAISKAKLAFKAIPAKGSMAWTAIIEAYGYNDLYQDAINLFHQMQSDGF 594
Score = 68.2 bits (165), Expect = 7e-10
Identities = 32/111 (28%), Positives = 63/111 (56%)
Frame = -1
Query: 349 DEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLRRDFVSVPFVSAEI 170
D+AL MQ RPD VT++ +L VC ++ L+ GKE+H + ++ F+ ++ +
Sbjct: 378 DQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVKNGFLPNVSIATSL 437
Query: 169 VKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLM 17
+ MY G ++ + +FD ++ ++WTA+I++Y N +A+ ++ M
Sbjct: 438 MVMYSKCGNLDYSFKLFDGMDARNVISWTAMIDSYVENGCLHEAVGVFRSM 488
Score = 65.9 bits (159), Expect = 3e-09
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Frame = -1
Query: 346 EALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLR-RDFVSVPFVSAEI 170
EAL R M+ P+ V M+ IL V G++G K G+EVH +V++ + + F+ + +
Sbjct: 277 EALEYLRWMRREGICPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTKSYSKQVFIQSAL 336
Query: 169 VKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGF 2
+ MY G++ + VF + + +++WTAL+ Y N R AL M GF
Sbjct: 337 IDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGRLDQALRSIAWMQQEGF 392
>ref|XP_003604235.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505290|gb|AES86432.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 688
Score = 146 bits (369), Expect = 2e-33
Identities = 71/115 (61%), Positives = 88/115 (76%)
Frame = -1
Query: 346 EALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLRRDFVSVPFVSAEIV 167
EAL V RSMQLSKHRPD V MSR+L VCG++ LK GKE+HG +L+RDF SV FVSAE++
Sbjct: 506 EALGVIRSMQLSKHRPDSVAMSRMLSVCGELKLLKHGKEIHGQILKRDFTSVHFVSAELI 565
Query: 166 KMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGF 2
MYG G+++KA LVF P KGSMTWTALI AY +N +Q A+DL+D M ++ F
Sbjct: 566 NMYGALGDVDKANLVFSAVPVKGSMTWTALIRAYEYNELYQGAIDLFDQMRSDRF 620
Score = 64.3 bits (155), Expect = 1e-08
Identities = 32/105 (30%), Positives = 58/105 (55%)
Frame = -1
Query: 349 DEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLRRDFVSVPFVSAEI 170
++AL MQ RPD VT++ +L +C + L+ GK++H + L+ F+ +S+ +
Sbjct: 404 EQALRAVIWMQQEGFRPDVVTVATVLPICAQLRALEQGKQIHAYALKHWFLPNVSLSSSL 463
Query: 169 VKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDAL 35
V MY G +E + +F + ++WTA+I++Y N +AL
Sbjct: 464 VVMYSKCGVVEYSTRLFGDMEQRNVISWTAMIDSYIENGHLYEAL 508
Score = 57.4 bits (137), Expect = 1e-06
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = -1
Query: 301 PDPVTMSRILRVCGDMGELKFGKEVHGHVLR-RDFVSVPFVSAEIVKMYGNSGEIEKAKL 125
P+ V M+ +L V G++ + + G+EVH VL+ + + V + ++ MY G++ A+
Sbjct: 318 PNSVIMTIVLPVIGEVCKRRLGQEVHAFVLKTKSYAEKVPVQSALIDMYCKCGDLSSARA 377
Query: 124 VFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGF 2
VF ++P + + WTAL+ Y R + AL M GF
Sbjct: 378 VFYSSPERNVVCWTALMSGYASVGRLEQALRAVIWMQQEGF 418
>ref|XP_002325518.1| predicted protein [Populus trichocarpa] gi|222862393|gb|EEE99899.1|
predicted protein [Populus trichocarpa]
Length = 678
Score = 146 bits (368), Expect = 2e-33
Identities = 68/116 (58%), Positives = 90/116 (77%)
Frame = -1
Query: 349 DEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLRRDFVSVPFVSAEI 170
+EA VFR MQ SKHRPD VTM+R+L +C + LKFGKE+HGH+L++DF S+PFVS+E+
Sbjct: 493 NEAFNVFRFMQWSKHRPDSVTMARMLSICSKIKTLKFGKEIHGHILKKDFESIPFVSSEL 552
Query: 169 VKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGF 2
VKMYG+ G + A+ VF+ P KGSMTWTA+IEAYG+N+ QDA+ L+D M + F
Sbjct: 553 VKMYGSCGLVHSAESVFNAVPVKGSMTWTAIIEAYGYNSLWQDAIKLFDEMRSRKF 608
Score = 65.5 bits (158), Expect = 4e-09
Identities = 30/102 (29%), Positives = 58/102 (56%)
Frame = -1
Query: 322 MQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLRRDFVSVPFVSAEIVKMYGNSGE 143
MQ RPD VT++ ++ VC + LK GKE+H +++ F+ ++ ++KMY G
Sbjct: 401 MQQEGCRPDVVTVATVIPVCAKLKTLKHGKEIHAFSVKKLFLPNVSLTTSLIKMYSKCGV 460
Query: 142 IEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLM 17
++ + +FD ++ + WTA+I++Y N +A +++ M
Sbjct: 461 LDYSVKLFDGMEARNVIAWTAMIDSYVENGCINEAFNVFRFM 502
>ref|XP_002528029.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532559|gb|EEF34347.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 208
Score = 145 bits (365), Expect = 4e-33
Identities = 71/116 (61%), Positives = 86/116 (74%)
Frame = -1
Query: 349 DEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLRRDFVSVPFVSAEI 170
+EAL VFRSMQLSKHRPD V M+R+L VCG M LK GKE+HGH L++ S+PFVSAEI
Sbjct: 23 NEALCVFRSMQLSKHRPDSVVMARMLSVCGKMKALKLGKEIHGHALKKHCESIPFVSAEI 82
Query: 169 VKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGF 2
V+MYG+ G AK F P KGSM WTA+IEA+GHNN +DA+ L+ MI+ GF
Sbjct: 83 VRMYGSCGLNHIAKSFFHAIPVKGSMAWTAIIEAHGHNNLQRDAIHLFHEMISGGF 138