BLASTX nr result
ID: Coptis25_contig00019017
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00019017
(254 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat... 82 6e-14
ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat... 81 1e-13
ref|NP_176501.1| pentatricopeptide repeat-containing protein [Ar... 80 2e-13
ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containi... 79 3e-13
ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779... 79 3e-13
>ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 81.6 bits (200), Expect = 6e-14
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
+CK + A+KL + +D +P VE+YN IIDALCK V++A LF EM+ KG++AD
Sbjct: 174 VCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISAD 233
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+VT TTL+ G + KL EA+ LL
Sbjct: 234 VVTYTTLIYGFCIASKLKEAIGLL 257
Score = 63.9 bits (154), Expect = 1e-08
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = -1
Query: 251 CKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTADI 72
CK D AL LFK M + + PG+ Y+ +ID LCK R++ L EM +G+ A++
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANV 409
Query: 71 VTSTTLLKGLSVQGKLVEAVEL 6
+T +L+ GL G L A+ L
Sbjct: 410 ITYNSLIDGLCKNGHLDRAIAL 431
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
LCK + D A+ LF M + +RP + +++D LCK R+ DA FQ++ KG D
Sbjct: 419 LCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLD 478
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+ ++ G QG L EA+ +L
Sbjct: 479 VYKYNVMINGHCKQGLLEEALTML 502
>ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 80.9 bits (198), Expect = 1e-13
Identities = 39/84 (46%), Positives = 58/84 (69%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
+CK + A+KL + +D +P VE+Y+ IIDALCK V++A LF EM+ KG++AD
Sbjct: 174 VCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISAD 233
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+VT +TL+ G ++GKL EA+ LL
Sbjct: 234 VVTYSTLIYGFCIEGKLKEAIGLL 257
Score = 63.2 bits (152), Expect = 2e-08
Identities = 32/82 (39%), Positives = 45/82 (54%)
Frame = -1
Query: 251 CKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTADI 72
CK D AL LFK M + + PG+ Y+ +ID LCK R+ L EM +G AD+
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADV 409
Query: 71 VTSTTLLKGLSVQGKLVEAVEL 6
+T ++L+ GL G L A+ L
Sbjct: 410 ITYSSLIDGLCKNGHLDRAIAL 431
Score = 62.0 bits (149), Expect = 5e-08
Identities = 29/84 (34%), Positives = 49/84 (58%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
LCK + D A+ LF M + ++RP + + +++D LCK R+ DA +FQ++ KG +
Sbjct: 419 LCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLN 478
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+ T ++ G QG L EA+ +L
Sbjct: 479 VYTYNVMINGHCKQGLLEEALTML 502
>ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein;
64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis
thaliana] gi|23197834|gb|AAN15444.1| unknown protein
[Arabidopsis thaliana] gi|332195938|gb|AEE34059.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 80.1 bits (196), Expect = 2e-13
Identities = 40/84 (47%), Positives = 53/84 (63%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
LCK + D AL L K M++ K+ PGV IYN IIDALC VNDA+ LF EM KG+ +
Sbjct: 231 LCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+VT +L++ L G+ +A LL
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLL 314
Score = 63.2 bits (152), Expect = 2e-08
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
LC N + AL LF MD +RP V YN +I LC R +DA RL +M + + +
Sbjct: 266 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 325
Query: 74 IVTSTTLLKGLSVQGKLVEAVEL 6
+VT + L+ +GKLVEA +L
Sbjct: 326 VVTFSALIDAFVKEGKLVEAEKL 348
Score = 57.8 bits (138), Expect = 9e-07
Identities = 28/80 (35%), Positives = 46/80 (57%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
LC + AL +F+ + +K+ P + YN++I+ +CK +V D LF +S KGV +
Sbjct: 476 LCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 535
Query: 74 IVTSTTLLKGLSVQGKLVEA 15
+VT TT++ G +G EA
Sbjct: 536 VVTYTTMMSGFCRKGLKEEA 555
>ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 79.3 bits (194), Expect = 3e-13
Identities = 39/84 (46%), Positives = 57/84 (67%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
+CK + A+KL + +D +P VE+Y+ IIDALCK V++A LF EM+ KG++AD
Sbjct: 422 VCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISAD 481
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+VT +TL+ G + GKL EA+ LL
Sbjct: 482 VVTYSTLIYGFCIVGKLKEAIGLL 505
Score = 77.4 bits (189), Expect = 1e-12
Identities = 38/84 (45%), Positives = 57/84 (67%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
+C+ + AA+K + +D +P VE+YN IIDALCK V++A LF EM+ KG++A+
Sbjct: 108 VCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISAN 167
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+VT +TL+ G + GKL EA+ LL
Sbjct: 168 VVTYSTLIYGFCIVGKLKEALGLL 191
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = -1
Query: 251 CKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTADI 72
CK+ D AL LFK M + + P Y+ ++D LCK R++ L EM +G AD+
Sbjct: 598 CKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADV 657
Query: 71 VTSTTLLKGLSVQGKLVEAVEL 6
+T +L+ GL G L +A+ L
Sbjct: 658 ITYNSLIDGLCKNGHLDKAIAL 679
Score = 58.5 bits (140), Expect = 5e-07
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
LCK + D A+ LF M + +RP + +++D LCK R+ DA +FQ++ KG D
Sbjct: 667 LCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLD 726
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+ ++ G QG L EA+ +L
Sbjct: 727 VYIYNVMIYGHCKQGLLEEALTML 750
>ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 79.3 bits (194), Expect = 3e-13
Identities = 39/84 (46%), Positives = 58/84 (69%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
+CK + AA+KL + +D +P V +Y+ IIDALCK V++A LF EM+ KG++AD
Sbjct: 174 VCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISAD 233
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+VT +TL+ G ++GKL EA+ LL
Sbjct: 234 VVTYSTLIYGFCIEGKLKEAIGLL 257
Score = 77.8 bits (190), Expect = 9e-13
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
+CK + AA+KL + +D +P V +YN IIDALCK V+ A LF EM+ KG++AD
Sbjct: 1041 VCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISAD 1100
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+VT TL+ G + GKL EA+ LL
Sbjct: 1101 VVTYNTLIYGFCIVGKLKEAIGLL 1124
Score = 61.2 bits (147), Expect = 8e-08
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = -1
Query: 251 CKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTADI 72
CK D AL LFK M + + PG+ Y+ +ID LCK R+ L EM +G A++
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANV 409
Query: 71 VTSTTLLKGLSVQGKLVEAVEL 6
+T ++L+ GL G L A+ L
Sbjct: 410 ITYSSLIDGLCKNGHLDRAIAL 431
Score = 59.3 bits (142), Expect = 3e-07
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = -1
Query: 254 LCKAMNADAALKLFKAMDEAKVRPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKGVTAD 75
LCK + D A+ LF M + +RP + +++D LCK R+ DA +FQ++ KG +
Sbjct: 419 LCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLN 478
Query: 74 IVTSTTLLKGLSVQGKLVEAVELL 3
+ T ++ G QG L EA+ +L
Sbjct: 479 VYTYNVMIDGHCKQGLLEEALTML 502