BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019005
         (1670 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methy...   466   e-128
ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferas...   451   e-124
ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methy...   449   e-123
ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B...   439   e-120
dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana]        439   e-120

>ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis
            vinifera] gi|296089930|emb|CBI39749.3| unnamed protein
            product [Vitis vinifera]
          Length = 525

 Score =  466 bits (1198), Expect = e-128
 Identities = 230/287 (80%), Positives = 258/287 (89%)
 Frame = -1

Query: 1670 WMVRRWIKYLGQEEAKRLMAWNNCDPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNL 1491
            WMVRRW KYLGQEEA +LM WNN +PSFSLRAN+ KGF+RADLV RL+ LKVPHELS +L
Sbjct: 231  WMVRRWTKYLGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHL 290

Query: 1490 DDFVRITTGMQNIIQAGLLKDGLCSVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFM 1311
            D+FVRI TGMQ +IQA LLK+GLCSVQDES GLVVSVVDPQPGESI+DCCAAPGGKT+FM
Sbjct: 291  DNFVRIRTGMQIVIQAQLLKEGLCSVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFM 350

Query: 1310 ASRLRGRGMVYAVDINEGRLRVLKETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLD 1131
            AS L G+GMV+A+DIN+GRLR++KETAKL  VD V++TVHADL  FA+NN VKSDKVLLD
Sbjct: 351  ASCLSGQGMVHAIDINKGRLRIVKETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLD 410

Query: 1130 APCSGLGVLSKRADLRWNRKLEDMEQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEEN 951
            APCSGLGVLSKRADLRWNR LEDMEQLK+LQDELLDAA+ LVKPGGVLVYSTCSIDPEEN
Sbjct: 411  APCSGLGVLSKRADLRWNRSLEDMEQLKNLQDELLDAAAILVKPGGVLVYSTCSIDPEEN 470

Query: 950  EERVAAFLRRQPEFHMDSAAKYVPSSFVTETGFFFSNPVEHALDGSF 810
            EERVAAFL+R PEF +D   +YVPS FVTE GF+FSNPV+HALDG+F
Sbjct: 471  EERVAAFLQRHPEFSIDPVGRYVPSDFVTEGGFYFSNPVKHALDGAF 517


>ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula]
            gi|355519174|gb|AET00798.1| Ribosomal RNA small subunit
            methyltransferase [Medicago truncatula]
          Length = 654

 Score =  451 bits (1161), Expect = e-124
 Identities = 219/287 (76%), Positives = 248/287 (86%)
 Frame = -1

Query: 1670 WMVRRWIKYLGQEEAKRLMAWNNCDPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNL 1491
            W+VRRW KYLGQEEA +LM WNN +PS+SLRAN AKGFSR DLV  L  LKVPH+LS +L
Sbjct: 235  WIVRRWTKYLGQEEAIKLMIWNNIEPSYSLRANRAKGFSRDDLVTELNALKVPHKLSLHL 294

Query: 1490 DDFVRITTGMQNIIQAGLLKDGLCSVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFM 1311
            DDFVRI TG+Q II AGL K+GLCSVQDES GL+VS+VDPQPGE+IVDCCAAPGGKTL+M
Sbjct: 295  DDFVRIKTGLQIIIHAGLFKEGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYM 354

Query: 1310 ASRLRGRGMVYAVDINEGRLRVLKETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLD 1131
            A+ L G+GMVYAVD+N GRLR+LKETAKLH+VD VV+TVHADLR   +   +KS+KVLLD
Sbjct: 355  AAHLSGQGMVYAVDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLTDGEPLKSNKVLLD 414

Query: 1130 APCSGLGVLSKRADLRWNRKLEDMEQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEEN 951
            APCSGLGVLSKRADLRWNRKLEDMEQLK LQDELLDAAS LVKPGGVLVYSTCSIDPEEN
Sbjct: 415  APCSGLGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASTLVKPGGVLVYSTCSIDPEEN 474

Query: 950  EERVAAFLRRQPEFHMDSAAKYVPSSFVTETGFFFSNPVEHALDGSF 810
            ++RVAAFL R  +FH+D   +YVP  FVT  GF+ SNPV+H+LDGSF
Sbjct: 475  DDRVAAFLERHADFHIDPVDRYVPPDFVTPKGFYSSNPVKHSLDGSF 521


>ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like
            [Glycine max]
          Length = 528

 Score =  449 bits (1155), Expect = e-123
 Identities = 216/287 (75%), Positives = 249/287 (86%)
 Frame = -1

Query: 1670 WMVRRWIKYLGQEEAKRLMAWNNCDPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNL 1491
            WMVRRW KYLGQEEA +LM WNN +PSFSLRAN A+GFSR DLV +L  LKVPH+LS +L
Sbjct: 234  WMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRARGFSRDDLVTQLNALKVPHKLSPHL 293

Query: 1490 DDFVRITTGMQNIIQAGLLKDGLCSVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFM 1311
            D+FVRI TG+Q IIQAGLLK GLCSVQDES GLVVSVVDPQPGE+I+DCCAAPGGKTL+M
Sbjct: 294  DEFVRIKTGLQIIIQAGLLKKGLCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYM 353

Query: 1310 ASRLRGRGMVYAVDINEGRLRVLKETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLD 1131
            AS L G+G V+A+D+N GRLR+LKETAKLH+VD V++ +HADLR   ++  +KS+KVLLD
Sbjct: 354  ASHLSGQGKVFAIDVNSGRLRILKETAKLHQVDGVITAIHADLRTLPDSGQLKSNKVLLD 413

Query: 1130 APCSGLGVLSKRADLRWNRKLEDMEQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEEN 951
            APCSGLGVLSKRADLRWN+ LEDMEQLK LQDELLDAASKLVKPGGVLVYSTCSIDPEEN
Sbjct: 414  APCSGLGVLSKRADLRWNKNLEDMEQLKELQDELLDAASKLVKPGGVLVYSTCSIDPEEN 473

Query: 950  EERVAAFLRRQPEFHMDSAAKYVPSSFVTETGFFFSNPVEHALDGSF 810
            ++RV AFL R  +FH+D   +YVP  F T +GFFFSNPV+H+LDGSF
Sbjct: 474  DDRVVAFLARHSDFHIDPVDRYVPPDFETSSGFFFSNPVKHSLDGSF 520


>ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B [Arabidopsis
            thaliana] gi|18176252|gb|AAL60011.1| putative sun protein
            fmu [Arabidopsis thaliana] gi|21436219|gb|AAM51397.1|
            putative sun protein fmu [Arabidopsis thaliana]
            gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein
            [Arabidopsis thaliana] gi|332641785|gb|AEE75306.1|
            ribosomal RNA small subunit methyltransferase B
            [Arabidopsis thaliana]
          Length = 523

 Score =  439 bits (1128), Expect = e-120
 Identities = 210/287 (73%), Positives = 248/287 (86%)
 Frame = -1

Query: 1670 WMVRRWIKYLGQEEAKRLMAWNNCDPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNL 1491
            WMVRRW+KYLG +EA +LM WNN DP FSLRANT +  +RADLV+RL +LKVPHELS +L
Sbjct: 229  WMVRRWVKYLGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHL 288

Query: 1490 DDFVRITTGMQNIIQAGLLKDGLCSVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFM 1311
            ++FVRI TG+Q ++QAGLLK+G+CSVQDES GL+VSVV PQPGE I+D CAAPGGKTLFM
Sbjct: 289  EEFVRIKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFM 348

Query: 1310 ASRLRGRGMVYAVDINEGRLRVLKETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLD 1131
            AS L+G+GM+YA+D+NEGRLR+L ETAK H+VD +++T+H+DLR+FAE N V+ DKVLLD
Sbjct: 349  ASCLKGQGMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLD 408

Query: 1130 APCSGLGVLSKRADLRWNRKLEDMEQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEEN 951
            APCSGLGVLSKRADLRWNRKLEDM +L  LQDELLD+ASKLVK GGVLVYSTCSIDPEEN
Sbjct: 409  APCSGLGVLSKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEEN 468

Query: 950  EERVAAFLRRQPEFHMDSAAKYVPSSFVTETGFFFSNPVEHALDGSF 810
            E RV AFL R PEF +D    +VPSSFVT  GFF SNPV+H+LDG+F
Sbjct: 469  EGRVEAFLLRHPEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAF 515


>dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana]
          Length = 531

 Score =  439 bits (1128), Expect = e-120
 Identities = 210/287 (73%), Positives = 248/287 (86%)
 Frame = -1

Query: 1670 WMVRRWIKYLGQEEAKRLMAWNNCDPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNL 1491
            WMVRRW+KYLG +EA +LM WNN DP FSLRANT +  +RADLV+RL +LKVPHELS +L
Sbjct: 237  WMVRRWVKYLGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHL 296

Query: 1490 DDFVRITTGMQNIIQAGLLKDGLCSVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFM 1311
            ++FVRI TG+Q ++QAGLLK+G+CSVQDES GL+VSVV PQPGE I+D CAAPGGKTLFM
Sbjct: 297  EEFVRIKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFM 356

Query: 1310 ASRLRGRGMVYAVDINEGRLRVLKETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLD 1131
            AS L+G+GM+YA+D+NEGRLR+L ETAK H+VD +++T+H+DLR+FAE N V+ DKVLLD
Sbjct: 357  ASCLKGQGMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLD 416

Query: 1130 APCSGLGVLSKRADLRWNRKLEDMEQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEEN 951
            APCSGLGVLSKRADLRWNRKLEDM +L  LQDELLD+ASKLVK GGVLVYSTCSIDPEEN
Sbjct: 417  APCSGLGVLSKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEEN 476

Query: 950  EERVAAFLRRQPEFHMDSAAKYVPSSFVTETGFFFSNPVEHALDGSF 810
            E RV AFL R PEF +D    +VPSSFVT  GFF SNPV+H+LDG+F
Sbjct: 477  EGRVEAFLLRHPEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAF 523