BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018975
         (1221 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29343.3| unnamed protein product [Vitis vinifera]              439   e-121
ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus ...   419   e-114
ref|XP_002302151.1| predicted protein [Populus trichocarpa] gi|2...   404   e-110
ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthas...   400   e-109
ref|XP_003555416.1| PREDICTED: tRNA pseudouridine synthase 3-lik...   397   e-108

>emb|CBI29343.3| unnamed protein product [Vitis vinifera]
          Length = 466

 Score =  439 bits (1130), Expect = e-121
 Identities = 234/396 (59%), Positives = 278/396 (70%), Gaps = 22/396 (5%)
 Frame = +1

Query: 40   VAHLQNQLKFLQNRVKELELENAKLSSQLSSCRCRKLVESVKKLNVGGVTIGSFPIKGCG 219
            ++ LQ+QL  L+NRV+ELE ENAKLSSQ+SSC C K+ E +  +++         ++   
Sbjct: 19   ISTLQSQLLSLRNRVQELEAENAKLSSQISSCHCHKIREKLDSISL---------VQQSD 69

Query: 220  DLRLGDAVGHEKSKDIDATKHIELIESTPGCALETKHHTSRRYVALKIMYFGPRFYGFAS 399
            +L+ G           D T+  +L    PG  + T +H S+RYVALK+MYFGPRFYGFAS
Sbjct: 70   ELKPGG----------DETRKKKLKGKIPGTNMRTMNHISKRYVALKVMYFGPRFYGFAS 119

Query: 400  -VQVEPTVESEIFKALEKTRLLVCDKKESQYTRCGRTDKGVSSVGQVISLFLRSKLE--G 570
               ++PTVESEIFKALEKT L V DKKE QY+RCGRTDKGVSSVGQVI+LFLRS L+  G
Sbjct: 120  EAHMDPTVESEIFKALEKTWLAVGDKKELQYSRCGRTDKGVSSVGQVIALFLRSNLKEIG 179

Query: 571  PRVHGDCEEISPKNICE-----------------EIDYVRVLNAVLPKDIRVIGWCPVPH 699
             R     E +  +   E                 EIDY+RVLN VLPKDIRV+GWCPVP 
Sbjct: 180  AREENSKEVVPEEQYEERREVKDEGGGDSLASEGEIDYMRVLNRVLPKDIRVMGWCPVPI 239

Query: 700  NFHARFSCLSREYKYLFWRGNLDLLAMEVAGKKFVGQHDFRNFCKMDAANVHNYRRHITX 879
             FHARFSCLSREYKY FWRGNL++LAME AGKKFVG+HDFRNFCKMDA NVHNYRRHI  
Sbjct: 240  GFHARFSCLSREYKYFFWRGNLNILAMESAGKKFVGEHDFRNFCKMDAVNVHNYRRHIIS 299

Query: 880  XXXXXXXXXXEGDELLAMTIKGSAFLWHQIRCMVAVLFMTGHGLEVPDVIDELLDINKTP 1059
                      +G++L A+ IKGSAFLWHQ+RCMVAVLFM G GLE PDV+D LLD  +T 
Sbjct: 300  FEIAPTNNRYDGNQLWAIKIKGSAFLWHQVRCMVAVLFMIGQGLESPDVVDALLDTERTS 359

Query: 1060 RKPQYVMAPELPLILQSCEFEGLKFNCS--PGNAVR 1161
            RKPQY MAPE+PL+L+SCEFEGLKF CS   G A+R
Sbjct: 360  RKPQYAMAPEIPLVLESCEFEGLKFICSSDAGQALR 395


>ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223533532|gb|EEF35272.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 438

 Score =  419 bits (1076), Expect = e-114
 Identities = 229/396 (57%), Positives = 278/396 (70%), Gaps = 7/396 (1%)
 Frame = +1

Query: 4    KECEETKSRDFQVAHLQNQLKFLQNRVKELELENAKLSSQLSSCRCRKLVESVKKLNVGG 183
            +E EE +  +  +  L++Q+  L+++VKELE ENAKLSS L++CRC +  E   KLNV  
Sbjct: 16   REEEEEEEEEEVIIKLKSQIASLKSKVKELEAENAKLSSTLANCRCNQAEE---KLNV-- 70

Query: 184  VTIGSFPIKGCGDLRLGDAVGHEKSKDIDATKHIELIESTPGCALETKHHTSRRYVALKI 363
                              + G    K+I      + IE   G A    +H  +RYVALK+
Sbjct: 71   ------------------STGEHNIKNIKK----KTIEKNSGHATTIMNHHLKRYVALKV 108

Query: 364  MYFGPRFYGFASV-QVEPTVESEIFKALEKTRLLVCDKKESQYTRCGRTDKGVSSVGQVI 540
            MYFG RFYGF+S  Q++PTVESEIFKALE+TRLL+ DKKE QY+RCGRTDKGVS+VGQVI
Sbjct: 109  MYFGQRFYGFSSEGQMDPTVESEIFKALERTRLLIGDKKEIQYSRCGRTDKGVSAVGQVI 168

Query: 541  SLFLRSKL----EGPRVHGDCEEISPKNICEEIDYVRVLNAVLPKDIRVIGWCPVPHNFH 708
            +L LRSK+    E  +V G  E  S K+   EIDYVRVLN VLP DIR+IGWCPVP++F 
Sbjct: 169  ALLLRSKVKDIDEIGKVFG--ETASQKHSEGEIDYVRVLNRVLPNDIRIIGWCPVPNDFS 226

Query: 709  ARFSCLSREYKYLFWRGNLDLLAMEVAGKKFVGQHDFRNFCKMDAANVHNYRRHITXXXX 888
            ARFSCLSREYKY F   NL+LLAME AGKKF+G+HDFRNFCKMDA NVHNYRR+IT    
Sbjct: 227  ARFSCLSREYKYFFRGDNLNLLAMESAGKKFIGEHDFRNFCKMDAMNVHNYRRNITSFEI 286

Query: 889  XXXXXXXEGDELLAMTIKGSAFLWHQIRCMVAVLFMTGHGLEVPDVIDELLDINKTPRKP 1068
                   EG++L A+ I+GSAFLWHQ+RCMVAVLFM G GLE PDVID LLD  +TPRKP
Sbjct: 287  SPCHERYEGNQLFAIKIRGSAFLWHQVRCMVAVLFMIGQGLESPDVIDVLLDTVRTPRKP 346

Query: 1069 QYVMAPELPLILQSCEFEGLKFNCS--PGNAVRNSI 1170
            QY MAPE+PL+L SC+FEGL+F CS   G A+R  +
Sbjct: 347  QYPMAPEIPLVLHSCDFEGLQFTCSTDAGKALRTHL 382


>ref|XP_002302151.1| predicted protein [Populus trichocarpa] gi|222843877|gb|EEE81424.1|
            predicted protein [Populus trichocarpa]
          Length = 465

 Score =  404 bits (1037), Expect = e-110
 Identities = 221/394 (56%), Positives = 263/394 (66%), Gaps = 25/394 (6%)
 Frame = +1

Query: 37   QVAHLQNQLKFLQNRVKELELENAKLSSQLSSCRCRKLVESVKKLNVGGVTIGSFPIKGC 216
            ++ +L++Q+ FLQNRV+ELE ENAK SS+LSSCRC +L E   K             +  
Sbjct: 7    EIINLRSQITFLQNRVQELEEENAKFSSRLSSCRCDELQEKKPKEKC----------ENL 56

Query: 217  GDLRLGDAVGHEKSKDIDATKHIELIESTPGCALETKHHTSRRYVALKIMYFGPRFYGFA 396
            G+ R     G +KS    AT        TPG      +H  RRYVALK+MYFG RFYGF+
Sbjct: 57   GEERGEMNSGCKKSGRKKATP------KTPGYDTRIMNHHPRRYVALKVMYFGQRFYGFS 110

Query: 397  -SVQVEPTVESEIFKALEKTRLLVCDKKESQYTRCGRTDKGVSSVGQVISLFLRSKLEGP 573
               Q++PTVESEIFKALE TRLL+ D+KE QY+RCGRTDKGVS+VGQVI+L+LRSKL+  
Sbjct: 111  LEAQMDPTVESEIFKALETTRLLIGDRKEIQYSRCGRTDKGVSAVGQVIALYLRSKLKDI 170

Query: 574  RVH----GDCEEISPKNICEEIDYVRVLNAVLPKDIRVIGWCPVPHNFHARFSCLSREYK 741
              H    G+           EIDYVRVLN VLPKDIR++GWCPVP +F ARFSCLSREYK
Sbjct: 171  DAHNKHSGETVPEEQDGQPGEIDYVRVLNGVLPKDIRIVGWCPVPSDFSARFSCLSREYK 230

Query: 742  YLFWRGNLDLLAMEVAGKKFVGQHDFRNFCKMDAANVHNYRRHIT--------------- 876
            Y FW  NL+LL ME AGKK +G+HDFRNFCKMDA  VHNYRR++                
Sbjct: 231  YFFWNDNLNLLVMETAGKKLIGEHDFRNFCKMDAVKVHNYRRNVMSFEISPCDMSHSSGM 290

Query: 877  -----XXXXXXXXXXXEGDELLAMTIKGSAFLWHQIRCMVAVLFMTGHGLEVPDVIDELL 1041
                            EG +L A+ IKGSAFLWHQ+RCMVAVLFM G GLE P+VID LL
Sbjct: 291  GSVKWMITKPSIRTRFEGHQLYAIKIKGSAFLWHQVRCMVAVLFMIGQGLESPEVIDALL 350

Query: 1042 DINKTPRKPQYVMAPELPLILQSCEFEGLKFNCS 1143
            D  +T RKPQY+MAPE+PL+L SCEFEGLKF+CS
Sbjct: 351  D-TRTLRKPQYLMAPEIPLVLLSCEFEGLKFSCS 383


>ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis sativus]
          Length = 455

 Score =  400 bits (1027), Expect = e-109
 Identities = 217/370 (58%), Positives = 257/370 (69%), Gaps = 1/370 (0%)
 Frame = +1

Query: 37   QVAHLQNQLKFLQNRVKELELENAKLSSQLSSCRCRKLVESVKKLNVGGVTIGSFPIKGC 216
            Q+A LQ+QL+ LQ+RVKELE +N+KLSS+L+SC C     S +++N G  +         
Sbjct: 33   QIASLQSQLRLLQDRVKELEEKNSKLSSRLASCCC-----SERRMNFGDRSRSI------ 81

Query: 217  GDLRLGDAVGHEKSKDIDATKHIELIESTPGCALETKHHTSRRYVALKIMYFGPRFYGFA 396
                       EKSK+   TK  + +E T G       H S+RY+ALK+MYFG RFYGFA
Sbjct: 82   -----------EKSKESGTTKK-KSVEKTTGYNTRILDHCSKRYIALKVMYFGQRFYGFA 129

Query: 397  S-VQVEPTVESEIFKALEKTRLLVCDKKESQYTRCGRTDKGVSSVGQVISLFLRSKLEGP 573
            S  Q+EPTVESEIF+ALEK RLLV  +KES Y+RCGRTDKGVSSVGQVI+L+LRS L+ P
Sbjct: 130  SEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDKGVSSVGQVIALYLRSNLKDP 189

Query: 574  RVHGDCEEISPKNICEEIDYVRVLNAVLPKDIRVIGWCPVPHNFHARFSCLSREYKYLFW 753
                +      +    EIDYVRV+N VLP DIRV+GWC VP  F ARFSCL R+YKY FW
Sbjct: 190  PNGENSCHNGEEQHDGEIDYVRVINKVLPNDIRVLGWCSVPVGFSARFSCLRRKYKYFFW 249

Query: 754  RGNLDLLAMEVAGKKFVGQHDFRNFCKMDAANVHNYRRHITXXXXXXXXXXXEGDELLAM 933
              NL++ AME AGKKFVG+HDFRNFCKMDAANVHNYRR I            EG+ L A 
Sbjct: 250  GANLNISAMERAGKKFVGEHDFRNFCKMDAANVHNYRRRIMSFDISPCDVRTEGNPLWAF 309

Query: 934  TIKGSAFLWHQIRCMVAVLFMTGHGLEVPDVIDELLDINKTPRKPQYVMAPELPLILQSC 1113
             I+GSAFLWHQ+RCMVAV+FM G  LE PDVID LLD  +TPRKPQYVMA E  L+L SC
Sbjct: 310  NIEGSAFLWHQVRCMVAVVFMVGQDLEDPDVIDILLDPLRTPRKPQYVMASENSLVLHSC 369

Query: 1114 EFEGLKFNCS 1143
            EFEG+KF CS
Sbjct: 370  EFEGVKFWCS 379


>ref|XP_003555416.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max]
          Length = 426

 Score =  397 bits (1020), Expect = e-108
 Identities = 217/368 (58%), Positives = 252/368 (68%), Gaps = 4/368 (1%)
 Frame = +1

Query: 70   LQNRVKELELENAKLSSQLSSCRCRKLVESVKKLNVGGVTIGSFPIKGCGDLRLGDAVGH 249
            LQ R KELE ENAKL SQL+ CRC    E  KKL++                   D  G 
Sbjct: 14   LQARAKELEAENAKLLSQLADCRCH---EMEKKLHIP------------------DEKGR 52

Query: 250  EKSKDIDATKHIELIESTPGCALETKHHTSRRYVALKIMYFGPRFYGFAS-VQVEPTVES 426
            E  K     K  E IE  PG       H S+RYVALK+ YFG RFYGFAS  Q+EPTVES
Sbjct: 53   ESKKG--NRKSEEKIEKMPGYNTRFMSHHSKRYVALKVTYFGKRFYGFASEAQMEPTVES 110

Query: 427  EIFKALEKTRLLVCDKKESQYTRCGRTDKGVSSVGQVISLFLRSKLE-GPRVHGDCEEIS 603
            E+FKA EKTRLLV DKKESQY+RCGRTDKGVSSVGQVI+LFLRS L+     +G+   + 
Sbjct: 111  ELFKAFEKTRLLVGDKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISATNNGNSGVVL 170

Query: 604  PKNICEEIDYVRVLNAVLPKDIRVIGWCPVPHNFHARFSCLSREYKYLFWRGNLDLLAME 783
             +    EIDYV VLN VLP DIR++GWCP P +FHARFSCLSREYKY FW+ NL++ A+E
Sbjct: 171  DEQHEGEIDYVGVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIPAIE 230

Query: 784  VAGKKFVGQHDFRNFCKMDAANVHNYRRHITXXXXXXXXXXXEGDELLAMTIKGSAFLWH 963
            VAG K VG+HDFRNFCKMDAANVHNYRR IT             ++L  + I+GSAFLWH
Sbjct: 231  VAGNKLVGEHDFRNFCKMDAANVHNYRRCITLFEISSTDVRYNDNQLWVIKIRGSAFLWH 290

Query: 964  QIRCMVAVLFMTGHGLEVPDVIDELLDINKTPRKPQYVMAPELPLILQSCEFEGLKFNCS 1143
            Q+RCMVAVLFM G GLE P+VID LLD ++  RKPQY MA E+PL+LQSCEF+ +KF CS
Sbjct: 291  QVRCMVAVLFMVGKGLESPNVIDMLLDTSRILRKPQYTMASEVPLVLQSCEFDNIKFMCS 350

Query: 1144 --PGNAVR 1161
               G A+R
Sbjct: 351  SDAGEALR 358