BLASTX nr result
ID: Coptis25_contig00018974
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00018974 (478 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002521729.1| pentatricopeptide repeat-containing protein,... 215 3e-54 ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|2... 210 1e-52 ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containi... 209 1e-52 ref|XP_003612374.1| Pentatricopeptide repeat-containing protein ... 208 4e-52 ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containi... 207 5e-52 >ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 629 Score = 215 bits (547), Expect = 3e-54 Identities = 101/159 (63%), Positives = 124/159 (77%) Frame = -2 Query: 477 KSRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVEPNEVTYNILISAYCREGNLIQAX 298 KSRG++PN V+YNTL+HAL +NG VG+ +SLM E+ EPN+VT+N+LI+AYC+E NL+QA Sbjct: 205 KSRGVKPNAVVYNTLLHALCKNGKVGRARSLMDEIEEPNDVTFNVLIAAYCKEENLVQAL 264 Query: 297 XXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLIKGF 118 +PDV+T+TKVVE+LCN GR +AVE+LERV KGG VD VAY TL++GF Sbjct: 265 VLLEKSFSLGFVPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGF 324 Query: 117 CSLGKPKVGQRFLKEMESKGCLPNVNTYNALIAGFCASG 1 C LGK KV RFLKEME KGCLPNV TYN LI+GFC SG Sbjct: 325 CRLGKIKVAHRFLKEMERKGCLPNVETYNILISGFCDSG 363 Score = 66.6 bits (161), Expect = 2e-09 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 2/150 (1%) Frame = -2 Query: 444 YNTLIHALSRNGNVGKGKSLMSEMVE--PNEVTYNILISAYCREGNLIQAXXXXXXXXXX 271 YN++++ L + + + +M + P V ++ I +C +G + A Sbjct: 424 YNSVLYGLYKKNMWDEALEFLMKMEKLFPRAVDRSLRILGFCEKGAVKNAKMVFDQMINE 483 Query: 270 XXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLIKGFCSLGKPKVG 91 P+++ +V C +G ++A E++ + G + A + LI GFC GK + Sbjct: 484 GGTPNILVYDCLVHGFCQEGNLREAFELMNEMVGHGYFLVASGFNALIHGFCGQGKDESA 543 Query: 90 QRFLKEMESKGCLPNVNTYNALIAGFCASG 1 + L +M +GC+P+ TY+ LI C G Sbjct: 544 LKLLDDMVGRGCVPDRGTYSPLIDALCRKG 573 Score = 58.2 bits (139), Expect = 7e-07 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Frame = -2 Query: 474 SRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVEPNEVT----YNILISAYCREGNLI 307 + G PN ++Y+ L+H + GN+ + LM+EMV +N LI +C +G Sbjct: 482 NEGGTPNILVYDCLVHGFCQEGNLREAFELMNEMVGHGYFLVASGFNALIHGFCGQGKDE 541 Query: 306 QAXXXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLI 127 A +PD T + +++ LC KG + A+ + ++ EKG T D+ + +L+ Sbjct: 542 SALKLLDDMVGRGCVPDRGTYSPLIDALCRKGNFQKALSIFNQMIEKGITPDSSTWNSLL 601 >ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa] Length = 584 Score = 210 bits (534), Expect = 1e-52 Identities = 98/159 (61%), Positives = 120/159 (75%) Frame = -2 Query: 477 KSRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVEPNEVTYNILISAYCREGNLIQAX 298 KSRG++PN VIYNTL+HAL NG VG+ +SLM+E+ EPN+VT+N+LI YC+E N +QA Sbjct: 181 KSRGLKPNVVIYNTLLHALCNNGKVGRARSLMNEIKEPNDVTFNVLICGYCKEDNFVQAL 240 Query: 297 XXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLIKGF 118 +PDV+T+TKVVE+LCN GR +AVE+LERV KGG VD VA+ TLIKGF Sbjct: 241 VLLEKSFSLGFVPDVVTVTKVVEILCNVGRVTEAVEILERVESKGGVVDVVAHNTLIKGF 300 Query: 117 CSLGKPKVGQRFLKEMESKGCLPNVNTYNALIAGFCASG 1 C GK K+G LKEME KGCLPN +TYNALI+GFC SG Sbjct: 301 CKFGKVKLGHGLLKEMERKGCLPNADTYNALISGFCESG 339 Score = 68.6 bits (166), Expect = 5e-10 Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 39/198 (19%) Frame = -2 Query: 477 KSRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVE----PNEVTYNILISAYCREGNL 310 +S+G + V +NTLI + G V G L+ EM PN TYN LIS +C G L Sbjct: 282 ESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKEMERKGCLPNADTYNALISGFCESGML 341 Query: 309 IQAXXXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEK----GGTVD--- 151 A + +T +++ L ++GR +D ++LE + E GG++ Sbjct: 342 ESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRTEDGFKILELMEETRGVCGGSISPYN 401 Query: 150 ----------------------------AVAYTTLIKGFCSLGKPKVGQRFLKEMESKGC 55 AV + I GFC G + +R +M ++G Sbjct: 402 SVLYGLYRKNMLNEALEFLMKMENLFPRAVDRSLRILGFCEEGAIQEAKRVYDQMNNEGG 461 Query: 54 LPNVNTYNALIAGFCASG 1 +P+ Y+ LI GFC G Sbjct: 462 IPSALVYDCLIHGFCQEG 479 Score = 68.2 bits (165), Expect = 7e-10 Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 3/159 (1%) Frame = -2 Query: 477 KSRGIRPNTVI-YNTLIHALSRNGNVGKGKSLMSEMVE--PNEVTYNILISAYCREGNLI 307 ++RG+ ++ YN++++ L R + + + +M P V ++ I +C EG + Sbjct: 388 ETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKMENLFPRAVDRSLRILGFCEEGAIQ 447 Query: 306 QAXXXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLI 127 +A +P + ++ C +G ++A+E++ + G A + LI Sbjct: 448 EAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVFLGYFPVASTFNALI 507 Query: 126 KGFCSLGKPKVGQRFLKEMESKGCLPNVNTYNALIAGFC 10 GFC LGK + L++M +GC+P+ +Y+ LI C Sbjct: 508 SGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDALC 546 Score = 66.6 bits (161), Expect = 2e-09 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Frame = -2 Query: 477 KSRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVEPNEVT------YNILISAYCREG 316 K+ GI N V ++TLI L G G ++ M E V YN ++ R+ Sbjct: 352 KTDGINCNFVTFDTLIKGLFSRGRTEDGFKILELMEETRGVCGGSISPYNSVLYGLYRKN 411 Query: 315 NLIQAXXXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYT 136 L +A P + + + C +G ++A V +++ +GG A+ Y Sbjct: 412 MLNEALEFLMKMENLF--PRAVDRSLRILGFCEEGAIQEAKRVYDQMNNEGGIPSALVYD 469 Query: 135 TLIKGFCSLGKPKVGQRFLKEMESKGCLPNVNTYNALIAGFCASG 1 LI GFC G + + EM G P +T+NALI+GFC G Sbjct: 470 CLIHGFCQEGCVREALELMNEMVFLGYFPVASTFNALISGFCRLG 514 >ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Glycine max] Length = 618 Score = 209 bits (533), Expect = 1e-52 Identities = 98/159 (61%), Positives = 122/159 (76%) Frame = -2 Query: 477 KSRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVEPNEVTYNILISAYCREGNLIQAX 298 KSRG+ PNTV+YNTL+HAL RNG VG+ ++LM+EM +PN+VT+NILIS YC+EGN +QA Sbjct: 202 KSRGVAPNTVVYNTLLHALCRNGKVGRARNLMNEMEDPNDVTFNILISGYCKEGNSVQAL 261 Query: 297 XXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLIKGF 118 +PDV+++TKV+E+LCN GR +A EVLERV GG +D VAY TLIKGF Sbjct: 262 VLLEKSFSMGFVPDVVSVTKVLEILCNAGRTMEAAEVLERVESMGGLLDVVAYNTLIKGF 321 Query: 117 CSLGKPKVGQRFLKEMESKGCLPNVNTYNALIAGFCASG 1 C GK KVG FLK+ME+KGCLPNV+TYN LI+GF SG Sbjct: 322 CGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESG 360 Score = 67.4 bits (163), Expect = 1e-09 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Frame = -2 Query: 477 KSRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVEPNEVT------YNILISAYCREG 316 K+ GI+ N V ++TLI L + G S++ M E E + YN +I ++ Sbjct: 373 KTDGIKWNFVTFDTLIRGLCSEERIEDGFSILELMEESKEGSRGHISPYNSIIYGLLKKN 432 Query: 315 NLIQAXXXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYT 136 ++ P + + ++ C KG +DA V +++ ++GG + Y Sbjct: 433 GFDESAEFLTKMGNLF--PRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYN 490 Query: 135 TLIKGFCSLGKPKVGQRFLKEMESKGCLPNVNTYNALIAGFCASG 1 L+ GF G + + EM + C P +T+NA+I GFC G Sbjct: 491 CLVHGFSKQGNVREAVELMNEMIANNCFPIPSTFNAVITGFCRQG 535 Score = 65.5 bits (158), Expect = 4e-09 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 2/158 (1%) Frame = -2 Query: 468 GIRPNTVIYNTLIHALSRNGNVGKGKSLMSEM--VEPNEVTYNILISAYCREGNLIQAXX 295 G R + YN++I+ L + + +++M + P V +++I +C++G + A Sbjct: 413 GSRGHISPYNSIIYGLLKKNGFDESAEFLTKMGNLFPRAVDRSLMILEHCKKGAIEDAKR 472 Query: 294 XXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLIKGFC 115 +P ++ +V +G ++AVE++ + + +I GFC Sbjct: 473 VYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEMIANNCFPIPSTFNAVITGFC 532 Query: 114 SLGKPKVGQRFLKEMESKGCLPNVNTYNALIAGFCASG 1 GK + + ++++ ++GC+PN TY+ LI C +G Sbjct: 533 RQGKVESALKLVEDITARGCVPNTETYSPLIDVLCRNG 570 Score = 57.8 bits (138), Expect = 9e-07 Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 4/156 (2%) Frame = -2 Query: 477 KSRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVE----PNEVTYNILISAYCREGNL 310 K + P V + +I + G + K + +M++ P+ + YN L+ + ++GN+ Sbjct: 443 KMGNLFPRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNV 502 Query: 309 IQAXXXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTL 130 +A P T V+ C +G+ + A++++E + +G + Y+ L Sbjct: 503 REAVELMNEMIANNCFPIPSTFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPL 562 Query: 129 IKGFCSLGKPKVGQRFLKEMESKGCLPNVNTYNALI 22 I C G + + +M KG LP++ +N+L+ Sbjct: 563 IDVLCRNGDLQKAMQVFMQMVDKGILPDLFIWNSLL 598 >ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513709|gb|AES95332.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 620 Score = 208 bits (529), Expect = 4e-52 Identities = 101/158 (63%), Positives = 123/158 (77%) Frame = -2 Query: 477 KSRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVEPNEVTYNILISAYCREGNLIQAX 298 K+ G+ PNTVIYNTL+HAL RNG VG+ +SLM+EMV+PNEVT+NILIS+Y +E NL+QA Sbjct: 204 KNNGVTPNTVIYNTLLHALCRNGKVGRARSLMNEMVDPNEVTFNILISSYYKEENLVQAL 263 Query: 297 XXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLIKGF 118 +PDV+T+TKVVE+LCN GR +A EVLERV GG++DAVAY TLIKGF Sbjct: 264 VLLEKCFALSLVPDVVTVTKVVEILCNAGRVTEAAEVLERVESLGGSLDAVAYNTLIKGF 323 Query: 117 CSLGKPKVGQRFLKEMESKGCLPNVNTYNALIAGFCAS 4 C +GK KVG FLK+ME+KG LPNV+TYN LI GFC S Sbjct: 324 CGVGKVKVGLHFLKQMENKGYLPNVDTYNILIYGFCES 361 Score = 65.1 bits (157), Expect = 6e-09 Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 2/150 (1%) Frame = -2 Query: 444 YNTLIHALSRNGNVGKGKSLMSEMVE--PNEVTYNILISAYCREGNLIQAXXXXXXXXXX 271 YN++I+ L + + +++M + P V ++ I C+EG + A Sbjct: 423 YNSIIYGLFKQNRFDEASEFLAKMGKLFPRAVDRSMTIIQKCKEGAIEDAKNIYDKMIDE 482 Query: 270 XXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLIKGFCSLGKPKVG 91 +P ++ +V G ++AVE++ + A + +I FC GK + Sbjct: 483 GGIPSILVYNSLVHGFSQHGSIREAVELINEMISNNCFPIASTFNAIITEFCEQGKIESA 542 Query: 90 QRFLKEMESKGCLPNVNTYNALIAGFCASG 1 +F++++ ++GC+PN TY+ LI C G Sbjct: 543 LKFMEDITARGCVPNTETYSPLIDVLCRKG 572 Score = 62.4 bits (150), Expect = 4e-08 Identities = 30/115 (26%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Frame = -2 Query: 459 PNTVIYNTLIHALSRNGNVGKGKSLMSEMVEPN----EVTYNILISAYCREGNLIQAXXX 292 P+ ++YN+L+H S++G++ + L++EM+ N T+N +I+ +C +G + A Sbjct: 486 PSILVYNSLVHGFSQHGSIREAVELINEMISNNCFPIASTFNAIITEFCEQGKIESALKF 545 Query: 291 XXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLI 127 +P+ T + ++++LC KG + A++V + EKG D + +L+ Sbjct: 546 MEDITARGCVPNTETYSPLIDVLCRKGDIQKALQVFLEMVEKGILPDQCIWKSLL 600 >ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Vitis vinifera] Length = 686 Score = 207 bits (528), Expect = 5e-52 Identities = 101/159 (63%), Positives = 120/159 (75%) Frame = -2 Query: 477 KSRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVEPNEVTYNILISAYCREGNLIQAX 298 KSRG PNTVIYNT+IHAL +NG VG+ +SLM+EMVEP++VT+N+LISAYC+E NL+QA Sbjct: 260 KSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEMVEPSDVTFNVLISAYCQEENLVQAL 319 Query: 297 XXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLIKGF 118 +PDV+T TKVV +LC GR + VEVLERV GG VD VAY TLIKGF Sbjct: 320 VLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGF 379 Query: 117 CSLGKPKVGQRFLKEMESKGCLPNVNTYNALIAGFCASG 1 C LGK KVG R LK+ME KGCLPNV+TYN L +G+C SG Sbjct: 380 CMLGKAKVGHRVLKDMEIKGCLPNVDTYNILASGYCDSG 418 Score = 69.3 bits (168), Expect = 3e-10 Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Frame = -2 Query: 444 YNTLIHALSRNGNVGKGKSLMSEMVE--PNEVTYNILISAYCREGNLIQAXXXXXXXXXX 271 YN++I+ L + + +++M + P V ++ I +C EG++ A Sbjct: 479 YNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRILGFCNEGSIGDAKRVYDQMIKE 538 Query: 270 XXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTLIKGFCSLGKPKVG 91 +P V+ ++ C G ++A E++ + + G A + LI FC GK Sbjct: 539 GGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSA 598 Query: 90 QRFLKEMESKGCLPNVNTYNALIAGFCASG 1 + +++M +GCLP++ +Y+ ++ C G Sbjct: 599 LKLMEDMVGRGCLPDMGSYSPMVDALCNKG 628 Score = 63.2 bits (152), Expect = 2e-08 Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Frame = -2 Query: 477 KSRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVE----PNEVTYNILISAYCREGNL 310 K + P V + I G++G K + +M++ P+ + Y LI +C++GN+ Sbjct: 501 KMEKLFPRAVDRSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNV 560 Query: 309 IQAXXXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTL 130 +A P T ++ C +G+ A++++E + +G D +Y+ + Sbjct: 561 REAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPM 620 Query: 129 IKGFCSLGKPKVGQRFLKEMESKGCLPNVNTYNALI 22 + C+ G + R +M K LP+ +T+N+++ Sbjct: 621 VDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNSML 656 Score = 54.7 bits (130), Expect = 8e-06 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 7/160 (4%) Frame = -2 Query: 474 SRGIRPNTVIYNTLIHALSRNGNVGKGKSLMSEMVEP-----NEVTYNILISAYCREGNL 310 S G P+ V ++ L + G V +G ++ E VE + V YN LI +C G Sbjct: 327 SMGFVPDVVTATKVVGILCKAGRVTEGVEVL-ERVESMGGVVDVVAYNTLIKGFCMLGKA 385 Query: 309 IQAXXXXXXXXXXXXLPDVITITKVVELLCNKGRAKDAVEVLERVGEKGGTVDAVAYTTL 130 LP+V T + C+ G A+++ + G + + Y TL Sbjct: 386 KVGHRVLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTL 445 Query: 129 IKGFCSLGKPKVGQRFLKEMESK--GCLPNVNTYNALIAG 16 I+G CS G+ + G + L+ ME G ++ YN++I G Sbjct: 446 IRGLCSGGRMEDGFKILELMEESRGGAGGRISPYNSIIYG 485