BLASTX nr result

ID: Coptis25_contig00018972 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018972
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35803.3| unnamed protein product [Vitis vinifera]              161   6e-38
ref|XP_002277324.1| PREDICTED: AT-rich interactive domain-contai...   159   3e-37
ref|XP_002324130.1| predicted protein [Populus trichocarpa] gi|2...   152   3e-35
ref|XP_002516200.1| DNA binding protein, putative [Ricinus commu...   151   6e-35
ref|XP_003547888.1| PREDICTED: uncharacterized protein LOC100816...   147   7e-34

>emb|CBI35803.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  161 bits (407), Expect = 6e-38
 Identities = 74/98 (75%), Positives = 82/98 (83%)
 Frame = -1

Query: 295 PNIIYLQGQQLPNDEEVGSLVWNGIHLSTAEAICGLFGSTLPDVVYLELPNGEKLAEALC 116
           PN +Y QG+QL NDE VGSLVW G+ LS+AE ICGLFGS LP  VYLE+PNGEKLAEAL 
Sbjct: 71  PNFVYFQGEQLQNDE-VGSLVWGGVELSSAEDICGLFGSKLPTTVYLEIPNGEKLAEALH 129

Query: 115 HKGVPYVIYWKNAFSCYSACHFRQTLLSVIQSSCTHTW 2
            KG+PYVIYWKNAFSCY+ACHFR  L SV+QSS THTW
Sbjct: 130 SKGIPYVIYWKNAFSCYAACHFRNALFSVVQSSSTHTW 167


>ref|XP_002277324.1| PREDICTED: AT-rich interactive domain-containing protein 4 [Vitis
           vinifera] gi|297738501|emb|CBI27746.3| unnamed protein
           product [Vitis vinifera]
          Length = 739

 Score =  159 bits (401), Expect = 3e-37
 Identities = 71/98 (72%), Positives = 81/98 (82%)
 Frame = -1

Query: 295 PNIIYLQGQQLPNDEEVGSLVWNGIHLSTAEAICGLFGSTLPDVVYLELPNGEKLAEALC 116
           PN +YLQG+QLP  EE+GSL W G+ LS+AEA+  LFG TLP  VYLE PNGEKLA+AL 
Sbjct: 66  PNFLYLQGEQLPGSEEIGSLTWGGVDLSSAEALVELFGPTLPTTVYLETPNGEKLAKALH 125

Query: 115 HKGVPYVIYWKNAFSCYSACHFRQTLLSVIQSSCTHTW 2
            KGV YVIYWKNAFSCY+ACHFRQ L SV+QSSC+HTW
Sbjct: 126 SKGVSYVIYWKNAFSCYAACHFRQALFSVVQSSCSHTW 163


>ref|XP_002324130.1| predicted protein [Populus trichocarpa] gi|222865564|gb|EEF02695.1|
           predicted protein [Populus trichocarpa]
          Length = 745

 Score =  152 bits (384), Expect = 3e-35
 Identities = 69/97 (71%), Positives = 83/97 (85%)
 Frame = -1

Query: 295 PNIIYLQGQQLPNDEEVGSLVWNGIHLSTAEAICGLFGSTLPDVVYLELPNGEKLAEALC 116
           P+I+Y QG+Q+ + EE+GSL W  + LST E++CGLFGSTLP  VYLE+PNGEKLAEAL 
Sbjct: 69  PSIVYFQGEQVEDREEIGSLRWADVGLSTPESLCGLFGSTLPPTVYLEMPNGEKLAEALH 128

Query: 115 HKGVPYVIYWKNAFSCYSACHFRQTLLSVIQSSCTHT 5
            KGVPYVIYWK+AFSCY+A HFRQ LLSV+QSSC+HT
Sbjct: 129 SKGVPYVIYWKSAFSCYAASHFRQALLSVVQSSCSHT 165


>ref|XP_002516200.1| DNA binding protein, putative [Ricinus communis]
           gi|223544686|gb|EEF46202.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 749

 Score =  151 bits (381), Expect = 6e-35
 Identities = 69/97 (71%), Positives = 81/97 (83%)
 Frame = -1

Query: 295 PNIIYLQGQQLPNDEEVGSLVWNGIHLSTAEAICGLFGSTLPDVVYLELPNGEKLAEALC 116
           PNI+YLQG+ + + EE+GSL W G  LST +A+C LFGSTLP  VYLE+PNGEKLAEAL 
Sbjct: 71  PNIVYLQGEIIEDSEEIGSLRWAGADLSTPDALCELFGSTLPPTVYLEIPNGEKLAEALH 130

Query: 115 HKGVPYVIYWKNAFSCYSACHFRQTLLSVIQSSCTHT 5
            KGVPYVIYWK+ FSCY+A HFRQ LLSV+QSSC+HT
Sbjct: 131 FKGVPYVIYWKSTFSCYAAAHFRQALLSVVQSSCSHT 167


>ref|XP_003547888.1| PREDICTED: uncharacterized protein LOC100816540 [Glycine max]
          Length = 782

 Score =  147 bits (372), Expect = 7e-34
 Identities = 69/98 (70%), Positives = 77/98 (78%)
 Frame = -1

Query: 295 PNIIYLQGQQLPNDEEVGSLVWNGIHLSTAEAICGLFGSTLPDVVYLELPNGEKLAEALC 116
           PN +YL+G QL N E VGSLVW G+ LST E I  LFGSTLP  VYLE+PNGE  AEAL 
Sbjct: 70  PNFVYLRGDQLENGE-VGSLVWQGVELSTCEDITELFGSTLPTAVYLEIPNGESFAEALH 128

Query: 115 HKGVPYVIYWKNAFSCYSACHFRQTLLSVIQSSCTHTW 2
            KG+PYVI+WKN FSCY+ACHFRQ  LSV+QSS THTW
Sbjct: 129 LKGIPYVIFWKNTFSCYAACHFRQAFLSVVQSSSTHTW 166


Top