BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018958
         (488 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28998.3| unnamed protein product [Vitis vinifera]              182   2e-44
ref|XP_002267326.1| PREDICTED: pentatricopeptide repeat-containi...   182   2e-44
ref|XP_002314200.1| predicted protein [Populus trichocarpa] gi|2...   149   3e-34
ref|XP_004173450.1| PREDICTED: pentatricopeptide repeat-containi...   148   5e-34
ref|XP_004171410.1| PREDICTED: pentatricopeptide repeat-containi...   148   5e-34

>emb|CBI28998.3| unnamed protein product [Vitis vinifera]
          Length = 732

 Score =  182 bits (463), Expect = 2e-44
 Identities = 87/127 (68%), Positives = 102/127 (80%)
 Frame = -2

Query: 487 ANLHPTHATFVSVISLCSHLGLVELGCSFFDSISSVYKMVPSEENFGSLVDLFSRNGFLE 308
           A L P+ ATFVSVIS CSHLGLVE G  FF S++  Y M PS +N+G LVDLFSRNGFLE
Sbjct: 582 ATLEPSQATFVSVISACSHLGLVEQGDIFFKSMNLDYGMDPSPDNYGCLVDLFSRNGFLE 641

Query: 307 EAKHVLEVMPFAPWPAVWRSILNGCRIHGNRNLGEWASKHLLQLVPKNDAAYVLLSVKA* 128
           +AKH++E MPF PWPA+WRS+LNGCRIHGN+ LGEWA+K LLQLVP+NDAAYVLLS    
Sbjct: 642 DAKHIIETMPFPPWPAIWRSLLNGCRIHGNKELGEWAAKKLLQLVPENDAAYVLLSKVYS 701

Query: 127 GKCDWSN 107
            +  WS+
Sbjct: 702 EEGSWSD 708


>ref|XP_002267326.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Vitis vinifera]
          Length = 708

 Score =  182 bits (463), Expect = 2e-44
 Identities = 87/127 (68%), Positives = 102/127 (80%)
 Frame = -2

Query: 487 ANLHPTHATFVSVISLCSHLGLVELGCSFFDSISSVYKMVPSEENFGSLVDLFSRNGFLE 308
           A L P+ ATFVSVIS CSHLGLVE G  FF S++  Y M PS +N+G LVDLFSRNGFLE
Sbjct: 558 ATLEPSQATFVSVISACSHLGLVEQGDIFFKSMNLDYGMDPSPDNYGCLVDLFSRNGFLE 617

Query: 307 EAKHVLEVMPFAPWPAVWRSILNGCRIHGNRNLGEWASKHLLQLVPKNDAAYVLLSVKA* 128
           +AKH++E MPF PWPA+WRS+LNGCRIHGN+ LGEWA+K LLQLVP+NDAAYVLLS    
Sbjct: 618 DAKHIIETMPFPPWPAIWRSLLNGCRIHGNKELGEWAAKKLLQLVPENDAAYVLLSKVYS 677

Query: 127 GKCDWSN 107
            +  WS+
Sbjct: 678 EEGSWSD 684


>ref|XP_002314200.1| predicted protein [Populus trichocarpa] gi|222850608|gb|EEE88155.1|
           predicted protein [Populus trichocarpa]
          Length = 805

 Score =  149 bits (375), Expect = 3e-34
 Identities = 69/115 (60%), Positives = 90/115 (78%)
 Frame = -2

Query: 487 ANLHPTHATFVSVISLCSHLGLVELGCSFFDSISSVYKMVPSEENFGSLVDLFSRNGFLE 308
           ANL P+ ATFVSVI+ C H+G VE GC  F S+  +Y M PS + +G LVD+FSRNG+LE
Sbjct: 655 ANLQPSQATFVSVIAACGHIGHVEKGCRLFKSMD-LYGMEPSPDIYGCLVDMFSRNGYLE 713

Query: 307 EAKHVLEVMPFAPWPAVWRSILNGCRIHGNRNLGEWASKHLLQLVPKNDAAYVLL 143
           +AK ++E +P+  WPA+ RS+L+GCR++GNR LGEWA+K LLQLVP NDAA+ LL
Sbjct: 714 DAKQIIESLPYPAWPAILRSLLSGCRMYGNRELGEWAAKKLLQLVPHNDAAHALL 768


>ref|XP_004173450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 453

 Score =  148 bits (373), Expect = 5e-34
 Identities = 66/116 (56%), Positives = 90/116 (77%)
 Frame = -2

Query: 487 ANLHPTHATFVSVISLCSHLGLVELGCSFFDSISSVYKMVPSEENFGSLVDLFSRNGFLE 308
           A + P+ A+FVSVIS C H+GLVE G S F ++ S Y M PS +N+G LVD+ SRNGFL 
Sbjct: 303 AKVQPSQASFVSVISACGHMGLVEQGRSLFQTMKSDYNMTPSRDNYGCLVDMLSRNGFLY 362

Query: 307 EAKHVLEVMPFAPWPAVWRSILNGCRIHGNRNLGEWASKHLLQLVPKNDAAYVLLS 140
           +A++++E MPF+PWPA+ RS+L+GCRI+GNR LG+W ++ LL L P+N A +VLLS
Sbjct: 363 DARYIIESMPFSPWPAILRSLLSGCRIYGNRELGQWTAEKLLSLAPQNLATHVLLS 418


>ref|XP_004171410.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 172

 Score =  148 bits (373), Expect = 5e-34
 Identities = 66/116 (56%), Positives = 90/116 (77%)
 Frame = -2

Query: 487 ANLHPTHATFVSVISLCSHLGLVELGCSFFDSISSVYKMVPSEENFGSLVDLFSRNGFLE 308
           A + P+ A+FVSVIS C H+GLVE G S F ++ S Y M PS +N+G LVD+ SRNGFL 
Sbjct: 22  AKVQPSQASFVSVISACGHMGLVEQGRSLFQTMKSDYNMTPSRDNYGCLVDMLSRNGFLY 81

Query: 307 EAKHVLEVMPFAPWPAVWRSILNGCRIHGNRNLGEWASKHLLQLVPKNDAAYVLLS 140
           +A++++E MPF+PWPA+ RS+L+GCRI+GNR LG+W ++ LL L P+N A +VLLS
Sbjct: 82  DARYIIESMPFSPWPAILRSLLSGCRIYGNRELGQWTAEKLLSLAPQNLATHVLLS 137