BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018889
         (438 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529510.1| pentatricopeptide repeat-containing protein,...    86   3e-15
emb|CBI29825.3| unnamed protein product [Vitis vinifera]               82   6e-14
ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containi...    82   6e-14
ref|NP_178072.1| pentatricopeptide repeat-containing protein [Ar...    74   9e-12
ref|XP_002889252.1| pentatricopeptide repeat-containing protein ...    74   9e-12

>ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531026|gb|EEF32879.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 804

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 42/96 (43%), Positives = 66/96 (68%), Gaps = 4/96 (4%)
 Frame = +3

Query: 162 FSHIEFKLQQ----ILDLYDPIEQPLETIAPLHLTPNTITSLLVHNQSNVELSYRFFIWA 329
           +S ++F +      I+D  +PIE  LE+  P  L+P+ +T  ++ N  N  L +RFFIWA
Sbjct: 25  YSAVDFAISNEVLTIIDSVNPIEPALESKVPF-LSPSIVT-YIIKNPPNSLLGFRFFIWA 82

Query: 330 MRKKDLRSWASHNLMIDMLVKNNGFDLAWKVIQELK 437
            + + LRSW SHN++IDML+K+NGF+L W+V++E+K
Sbjct: 83  SKFRRLRSWVSHNMIIDMLIKDNGFELYWQVLKEIK 118


>emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 37/100 (37%), Positives = 62/100 (62%)
 Frame = +3

Query: 138 SQFITKPRFSHIEFKLQQILDLYDPIEQPLETIAPLHLTPNTITSLLVHNQSNVELSYRF 317
           +   T  + + I  ++  +++  +P+E  LE +AP     + I + ++  Q   EL +RF
Sbjct: 26  ANLFTTAQGAAISNEVLTVMETVNPMEDALEKLAPF--LSSEIVNDVMREQRRPELGFRF 83

Query: 318 FIWAMRKKDLRSWASHNLMIDMLVKNNGFDLAWKVIQELK 437
           FIW  R++  RSW +HNL+IDML K++GFD  WK+++ELK
Sbjct: 84  FIWTTRRRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELK 123


>ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 37/100 (37%), Positives = 62/100 (62%)
 Frame = +3

Query: 138 SQFITKPRFSHIEFKLQQILDLYDPIEQPLETIAPLHLTPNTITSLLVHNQSNVELSYRF 317
           +   T  + + I  ++  +++  +P+E  LE +AP     + I + ++  Q   EL +RF
Sbjct: 26  ANLFTTAQGAAISNEVLTVMETVNPMEDALEKLAPF--LSSEIVNDVMREQRRPELGFRF 83

Query: 318 FIWAMRKKDLRSWASHNLMIDMLVKNNGFDLAWKVIQELK 437
           FIW  R++  RSW +HNL+IDML K++GFD  WK+++ELK
Sbjct: 84  FIWTTRRRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELK 123


>ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g79540 gi|4835755|gb|AAD30222.1|AC007202_4 Contains
           similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
           gi|332198140|gb|AEE36261.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 11/117 (9%)
 Frame = +3

Query: 120 LIYKPISQFITKPRF-------SHIEFKLQ----QILDLYDPIEQPLETIAPLHLTPNTI 266
           + ++ + QF +KP +        + EF +      IL    PIE  LE + P  L+ N I
Sbjct: 5   MFFRSVIQFYSKPSWMQRSYSSGNAEFNISGEVISILAKKKPIEPALEPLVPF-LSKNII 63

Query: 267 TSLLVHNQSNVELSYRFFIWAMRKKDLRSWASHNLMIDMLVKNNGFDLAWKVIQELK 437
           TS+ + ++ N +L +RFFIWA R++ LRS  S  L+IDML ++NG DL W+ ++ELK
Sbjct: 64  TSV-IKDEVNRQLGFRFFIWASRRERLRSRESFGLVIDMLSEDNGCDLYWQTLEELK 119


>ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335093|gb|EFH65511.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 780

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 11/117 (9%)
 Frame = +3

Query: 120 LIYKPISQFITKPRF-------SHIEFKLQ----QILDLYDPIEQPLETIAPLHLTPNTI 266
           + ++ + QF +KP +        + EF +      IL    PIE  LE + P  L+ N I
Sbjct: 5   MFFRSVIQFYSKPSWMQRSYSSGNAEFNISGEVISILAKKKPIEPALEPLVPF-LSKNII 63

Query: 267 TSLLVHNQSNVELSYRFFIWAMRKKDLRSWASHNLMIDMLVKNNGFDLAWKVIQELK 437
           TS+ +  + N +L +RFFIWA R++ LRS  S  L+IDML ++NG DL W+ ++ELK
Sbjct: 64  TSV-IKEEVNRQLGFRFFIWASRRERLRSGESFGLVIDMLSEDNGCDLYWQTLEELK 119