BLASTX nr result

ID: Coptis25_contig00018875 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018875
         (207 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA97107.2| Lysosomal Cystine Transporter family protein, exp...    53   3e-11
ref|NP_001066568.1| Os12g0278700 [Oryza sativa Japonica Group] g...    53   3e-11
gb|ABK23234.1| unknown [Picea sitchensis]                              52   2e-10
ref|XP_003578719.1| PREDICTED: cystinosin homolog [Brachypodium ...    51   2e-10
ref|XP_002964547.1| hypothetical protein SELMODRAFT_81947 [Selag...    49   7e-10

>gb|ABA97107.2| Lysosomal Cystine Transporter family protein, expressed [Oryza
           sativa Japonica Group] gi|215695525|dbj|BAG90716.1|
           unnamed protein product [Oryza sativa Japonica Group]
          Length = 274

 Score = 53.1 bits (126), Expect(2) = 3e-11
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = +3

Query: 30  VFVALPTQSWLWLI*VFNTIQVFMTVIKYIPQAIM 134
           + VA P  +WLWLI VFN+IQV MT IKYIPQAIM
Sbjct: 139 LIVAWPKSNWLWLIDVFNSIQVGMTAIKYIPQAIM 173



 Score = 39.7 bits (91), Expect(2) = 3e-11
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +2

Query: 140 RKSTIGWSIGNILLDLLEGMTN 205
           RKSTIGWSIGNILLDL  G+ N
Sbjct: 177 RKSTIGWSIGNILLDLTGGVLN 198


>ref|NP_001066568.1| Os12g0278700 [Oryza sativa Japonica Group]
           gi|108862476|gb|ABA97108.2| Lysosomal Cystine
           Transporter family protein, expressed [Oryza sativa
           Japonica Group] gi|113649075|dbj|BAF29587.1|
           Os12g0278700 [Oryza sativa Japonica Group]
           gi|218186660|gb|EEC69087.1| hypothetical protein
           OsI_37977 [Oryza sativa Indica Group]
           gi|222616905|gb|EEE53037.1| hypothetical protein
           OsJ_35759 [Oryza sativa Japonica Group]
          Length = 268

 Score = 53.1 bits (126), Expect(2) = 3e-11
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = +3

Query: 30  VFVALPTQSWLWLI*VFNTIQVFMTVIKYIPQAIM 134
           + VA P  +WLWLI VFN+IQV MT IKYIPQAIM
Sbjct: 139 LIVAWPKSNWLWLIDVFNSIQVGMTAIKYIPQAIM 173



 Score = 39.7 bits (91), Expect(2) = 3e-11
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +2

Query: 140 RKSTIGWSIGNILLDLLEGMTN 205
           RKSTIGWSIGNILLDL  G+ N
Sbjct: 177 RKSTIGWSIGNILLDLTGGVLN 198


>gb|ABK23234.1| unknown [Picea sitchensis]
          Length = 272

 Score = 52.4 bits (124), Expect(2) = 2e-10
 Identities = 24/41 (58%), Positives = 28/41 (68%)
 Frame = +3

Query: 12  GFLPQSVFVALPTQSWLWLI*VFNTIQVFMTVIKYIPQAIM 134
           G+   S+ +A P  SWLWL+  FN IQV MT IKYIPQA M
Sbjct: 133 GYAAVSLILAWPNGSWLWLVTCFNLIQVIMTTIKYIPQAYM 173



 Score = 37.4 bits (85), Expect(2) = 2e-10
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = +2

Query: 140 RKSTIGWSIGNILLDLLEGMTN 205
           RKST GWSIGNILLDL  G+ N
Sbjct: 177 RKSTEGWSIGNILLDLSGGLAN 198


>ref|XP_003578719.1| PREDICTED: cystinosin homolog [Brachypodium distachyon]
          Length = 268

 Score = 50.8 bits (120), Expect(2) = 2e-10
 Identities = 22/35 (62%), Positives = 28/35 (80%)
 Frame = +3

Query: 30  VFVALPTQSWLWLI*VFNTIQVFMTVIKYIPQAIM 134
           + +A P  +WLWLI VF++IQV MT IKYIPQA+M
Sbjct: 140 LIIAWPKSNWLWLIDVFSSIQVTMTAIKYIPQAVM 174



 Score = 38.9 bits (89), Expect(2) = 2e-10
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +2

Query: 140 RKSTIGWSIGNILLDLLEGMTN 205
           RKSTIGWSIGNI+LDL  G+ N
Sbjct: 178 RKSTIGWSIGNIILDLTGGVLN 199


>ref|XP_002964547.1| hypothetical protein SELMODRAFT_81947 [Selaginella moellendorffii]
           gi|300168276|gb|EFJ34880.1| hypothetical protein
           SELMODRAFT_81947 [Selaginella moellendorffii]
          Length = 277

 Score = 48.9 bits (115), Expect(2) = 7e-10
 Identities = 22/35 (62%), Positives = 26/35 (74%)
 Frame = +3

Query: 30  VFVALPTQSWLWLI*VFNTIQVFMTVIKYIPQAIM 134
           + VA P+  WLWL+ VFN IQ+ MT IKYIPQA M
Sbjct: 139 LIVAFPSGRWLWLVQVFNIIQLVMTAIKYIPQAWM 173



 Score = 39.3 bits (90), Expect(2) = 7e-10
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +2

Query: 140 RKSTIGWSIGNILLDLLEGMTN 205
           RKST+GWSIGNILLDL  G+ N
Sbjct: 177 RKSTVGWSIGNILLDLSGGIAN 198


Top