BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018822
         (1006 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26203.3| unnamed protein product [Vitis vinifera]              313   8e-94
ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   313   8e-94
ref|XP_002517195.1| dead box ATP-dependent RNA helicase, putativ...   309   3e-91
gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL i...   305   3e-89
gb|AAG34879.1|AF261024_1 putative chloroplast RNA helicase VDL' ...   301   2e-87

>emb|CBI26203.3| unnamed protein product [Vitis vinifera]
          Length = 486

 Score =  313 bits (803), Expect(2) = 8e-94
 Identities = 164/221 (74%), Positives = 185/221 (83%)
 Frame = +2

Query: 344  SGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPVELELEGKTC 523
            +GSGKTL YLLLIFSV+N + S VQALIVVPTRELG QV KVARMLAAKP+E ELE K+C
Sbjct: 129  TGSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQVTKVARMLAAKPMEPELEQKSC 188

Query: 524  TVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEKHLIKLETLKVLVIDEVDFMFN 703
            TVMALLDGGMLKRHKSWLKAEPPTIVVAT+ SL QMLEK + KLE+++VLVIDEVDFMFN
Sbjct: 189  TVMALLDGGMLKRHKSWLKAEPPTIVVATVRSLCQMLEKQIFKLESMRVLVIDEVDFMFN 248

Query: 704  SSKEVSSLRKLLTSYSSINSRQTVLASASIPQHRRFLYDCIQQKWTKXXXXXXXXXXXXX 883
            +SK+V SLRKLLTSYSS N+RQTV ASASIPQHRRFL+DCIQQKWTK             
Sbjct: 249  ASKQVGSLRKLLTSYSSTNNRQTVFASASIPQHRRFLHDCIQQKWTKSDVVHVHVNPIEP 308

Query: 884  MPSRVLHKFVQVCDKNKRLQTLLSLLEADEPKSGIIFVGEQ 1006
            MPS + H+FV +C+K +R QTLLSLL +D P+ GIIFVGEQ
Sbjct: 309  MPSSLHHRFV-ICNKYERRQTLLSLLHSDAPECGIIFVGEQ 348



 Score = 57.8 bits (138), Expect(2) = 8e-94
 Identities = 25/30 (83%), Positives = 29/30 (96%)
 Frame = +3

Query: 258 EEVGFVEPTDVQREALPILLSGRDCILHAQ 347
           EEVGF+ PTDVQ++ALP+LLSGRDCILHAQ
Sbjct: 99  EEVGFIVPTDVQQQALPVLLSGRDCILHAQ 128


>ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic-like
            [Vitis vinifera]
          Length = 482

 Score =  313 bits (803), Expect(2) = 8e-94
 Identities = 164/221 (74%), Positives = 185/221 (83%)
 Frame = +2

Query: 344  SGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPVELELEGKTC 523
            +GSGKTL YLLLIFSV+N + S VQALIVVPTRELG QV KVARMLAAKP+E ELE K+C
Sbjct: 125  TGSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQVTKVARMLAAKPMEPELEQKSC 184

Query: 524  TVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEKHLIKLETLKVLVIDEVDFMFN 703
            TVMALLDGGMLKRHKSWLKAEPPTIVVAT+ SL QMLEK + KLE+++VLVIDEVDFMFN
Sbjct: 185  TVMALLDGGMLKRHKSWLKAEPPTIVVATVRSLCQMLEKQIFKLESMRVLVIDEVDFMFN 244

Query: 704  SSKEVSSLRKLLTSYSSINSRQTVLASASIPQHRRFLYDCIQQKWTKXXXXXXXXXXXXX 883
            +SK+V SLRKLLTSYSS N+RQTV ASASIPQHRRFL+DCIQQKWTK             
Sbjct: 245  ASKQVGSLRKLLTSYSSTNNRQTVFASASIPQHRRFLHDCIQQKWTKSDVVHVHVNPIEP 304

Query: 884  MPSRVLHKFVQVCDKNKRLQTLLSLLEADEPKSGIIFVGEQ 1006
            MPS + H+FV +C+K +R QTLLSLL +D P+ GIIFVGEQ
Sbjct: 305  MPSSLHHRFV-ICNKYERRQTLLSLLHSDAPECGIIFVGEQ 344



 Score = 57.8 bits (138), Expect(2) = 8e-94
 Identities = 25/30 (83%), Positives = 29/30 (96%)
 Frame = +3

Query: 258 EEVGFVEPTDVQREALPILLSGRDCILHAQ 347
           EEVGF+ PTDVQ++ALP+LLSGRDCILHAQ
Sbjct: 95  EEVGFIVPTDVQQQALPVLLSGRDCILHAQ 124


>ref|XP_002517195.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223543830|gb|EEF45358.1| dead box ATP-dependent RNA
            helicase, putative [Ricinus communis]
          Length = 476

 Score =  309 bits (792), Expect(2) = 3e-91
 Identities = 163/221 (73%), Positives = 183/221 (82%)
 Frame = +2

Query: 344  SGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPVELELEGKTC 523
            +GSGKTLAYLLLI+SVIN QRS VQALI+VPTRELG QV KVARMLAAKP+++       
Sbjct: 130  TGSGKTLAYLLLIYSVINAQRSAVQALIIVPTRELGMQVTKVARMLAAKPMDV------- 182

Query: 524  TVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEKHLIKLETLKVLVIDEVDFMFN 703
            TVMALLDGGML+RHKSWLKAEPP IVVAT+ SL QMLEKH+ KL++++VLVIDEVDFMFN
Sbjct: 183  TVMALLDGGMLRRHKSWLKAEPPKIVVATIASLCQMLEKHIFKLDSMQVLVIDEVDFMFN 242

Query: 704  SSKEVSSLRKLLTSYSSINSRQTVLASASIPQHRRFLYDCIQQKWTKXXXXXXXXXXXXX 883
            SSK+VSSLRKLLTSYSS NSRQTV ASASIPQHRRFLYDCIQQKWTK             
Sbjct: 243  SSKQVSSLRKLLTSYSSCNSRQTVFASASIPQHRRFLYDCIQQKWTKSDAVHVHINPVQP 302

Query: 884  MPSRVLHKFVQVCDKNKRLQTLLSLLEADEPKSGIIFVGEQ 1006
            MPS + H+FV +C KN+R Q LLSLL+ D PKSGI+FVGEQ
Sbjct: 303  MPSCLQHRFV-ICSKNQRHQILLSLLQCDAPKSGIVFVGEQ 342



 Score = 53.5 bits (127), Expect(2) = 3e-91
 Identities = 22/30 (73%), Positives = 27/30 (90%)
 Frame = +3

Query: 258 EEVGFVEPTDVQREALPILLSGRDCILHAQ 347
           EE+G+V PTDVQR+ALP+L SG+DCILH Q
Sbjct: 100 EEIGYVMPTDVQRQALPVLFSGQDCILHGQ 129


>gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
            gi|11385590|gb|AAG34876.1|AF261021_1 putative chloroplast
            RNA helicase VDL isoform 1 [Nicotiana tabacum]
          Length = 466

 Score =  305 bits (782), Expect(2) = 3e-89
 Identities = 159/221 (71%), Positives = 181/221 (81%)
 Frame = +2

Query: 344  SGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPVELELEGKTC 523
            +GSGKTLAYLL I SVI+ QRS VQALIVVPTRELG QV KVARMLAAKP ELE   K+C
Sbjct: 113  TGSGKTLAYLLQILSVIDSQRSAVQALIVVPTRELGMQVTKVARMLAAKPSELESGPKSC 172

Query: 524  TVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEKHLIKLETLKVLVIDEVDFMFN 703
            TVMALLDGGML RHKSWLKAEPPTIVVATMGSL QMLEKH++KL++ +VLV+DEVDFMFN
Sbjct: 173  TVMALLDGGMLNRHKSWLKAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEVDFMFN 232

Query: 704  SSKEVSSLRKLLTSYSSINSRQTVLASASIPQHRRFLYDCIQQKWTKXXXXXXXXXXXXX 883
            SSKE+SSL++LLTSYS+  +RQT+ ASASIPQHRRFLYDC+QQKWTK             
Sbjct: 233  SSKEISSLKRLLTSYSTSKNRQTIFASASIPQHRRFLYDCVQQKWTKADVVHVHVNSVEP 292

Query: 884  MPSRVLHKFVQVCDKNKRLQTLLSLLEADEPKSGIIFVGEQ 1006
            MPS + H+FV VC K ++ Q LLSLL+ D P+S IIFV EQ
Sbjct: 293  MPSCLHHRFV-VCTKREKNQVLLSLLQVDSPESAIIFVSEQ 332



 Score = 50.4 bits (119), Expect(2) = 3e-89
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 258 EEVGFVEPTDVQREALPILLSGRDCILHAQ 347
           EEVG+V PT+VQ +ALP L SGRDC+LHAQ
Sbjct: 83  EEVGYVIPTEVQLQALPFLYSGRDCVLHAQ 112


>gb|AAG34879.1|AF261024_1 putative chloroplast RNA helicase VDL' isoform 1 [Nicotiana tabacum]
          Length = 466

 Score =  301 bits (772), Expect(2) = 2e-87
 Identities = 157/221 (71%), Positives = 180/221 (81%)
 Frame = +2

Query: 344  SGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPVELELEGKTC 523
            +GSGKTLAYLL + SVI+ QRS VQALIVVPTRELG QV KVAR LAAKP EL+   K+C
Sbjct: 113  TGSGKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSC 172

Query: 524  TVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEKHLIKLETLKVLVIDEVDFMFN 703
            TVMALLDGGML RHKSWLKAEPPTIVVATMGSL QMLEKH++KL++ +VLV+DEVDFMFN
Sbjct: 173  TVMALLDGGMLNRHKSWLKAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEVDFMFN 232

Query: 704  SSKEVSSLRKLLTSYSSINSRQTVLASASIPQHRRFLYDCIQQKWTKXXXXXXXXXXXXX 883
            SSKE+SSL++LLTSYSS  +RQT+ ASASIPQHRRFLYDC+QQKWTK             
Sbjct: 233  SSKEISSLKRLLTSYSSSKNRQTIFASASIPQHRRFLYDCVQQKWTKADVVHVHVNSVEP 292

Query: 884  MPSRVLHKFVQVCDKNKRLQTLLSLLEADEPKSGIIFVGEQ 1006
            MPS + H+FV VC K ++ Q LLSLL+ D P+S IIFV EQ
Sbjct: 293  MPSCLHHRFV-VCTKREKNQVLLSLLQVDSPESAIIFVSEQ 332



 Score = 48.5 bits (114), Expect(2) = 2e-87
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +3

Query: 258 EEVGFVEPTDVQREALPILLSGRDCILHAQ 347
           EEVG+V PT+VQ  ALP L SGRDC+LHAQ
Sbjct: 83  EEVGYVIPTEVQLLALPFLYSGRDCVLHAQ 112