BLASTX nr result

ID: Coptis25_contig00018800 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018800
         (646 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACH87172.1| zinc finger protein LSD2-like protein [Camellia s...   114   2e-23
ref|XP_002273964.1| PREDICTED: protein LOL2 [Vitis vinifera] gi|...   100   2e-19
ref|XP_003529323.1| PREDICTED: protein LOL2-like [Glycine max]        100   2e-19
ref|XP_002519059.1| conserved hypothetical protein [Ricinus comm...   100   2e-19
ref|XP_003566876.1| PREDICTED: uncharacterized protein LOC100840...    93   4e-17

>gb|ACH87172.1| zinc finger protein LSD2-like protein [Camellia sinensis]
          Length = 236

 Score =  114 bits (285), Expect = 2e-23
 Identities = 67/187 (35%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
 Frame = +2

Query: 11  DSPPPGWES---QKQEANSDSPPPPGFES---NENNTKNNSPSQKQSSTLVVVVDSNKKN 172
           D PPPGW     +K+E + D  PPPG++S   ++  T   +P+       V     N  +
Sbjct: 50  DGPPPGWTQIAVKKEEEDDDDGPPPGWQSIPPSQPPTITPAPTTPPPPPAVASGSGNAAH 109

Query: 173 YSPSQHSPLPPGSSPCQQHXXXXXXXXXXXXXXXXXXGIPTREVGQMICGVCRSLISYPK 352
               Q  P   GS+   +                        E+GQM+CG C+ L+SYP+
Sbjct: 110 TQLQQQPPKQEGSAKAARTQLQQELPKQEAV-----------EMGQMVCGSCQELLSYPR 158

Query: 353 GAGRVKCPGCQTVNHVLEAQQVGLVKCGSCSVLLMYKYEXXXXXXXXXXXXTQIGVDNKR 532
           GA  V+C  CQTVN+ LE  +VG VKCG C+VLLMY Y             T+IG  N+R
Sbjct: 159 GARLVRCLCCQTVNYCLEEHEVGQVKCGGCAVLLMYPYGAPFVKCSSCCFVTEIGEHNRR 218

Query: 533 PLISVQQ 553
           P +SVQQ
Sbjct: 219 PPLSVQQ 225


>ref|XP_002273964.1| PREDICTED: protein LOL2 [Vitis vinifera]
           gi|302144197|emb|CBI23324.3| unnamed protein product
           [Vitis vinifera]
          Length = 141

 Score =  100 bits (250), Expect = 2e-19
 Identities = 51/93 (54%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
 Frame = +2

Query: 299 EVGQMICGVCRSLISYPKGAGRVKCPGCQTVNHVLEAQQVGLVKCGSCSVLLMYKYEXXX 478
           E+ QM+CG CR L+SYP+G   V+C  CQTVN VLEA QVG VKCGSC+VLLMY Y    
Sbjct: 45  EMAQMVCGSCRRLLSYPQGTRHVECSCCQTVNFVLEAHQVGQVKCGSCAVLLMYPYGAPS 104

Query: 479 XXXXXXXXXTQIGVDNKRPLISVQQVHS-PSHN 574
                    T+IGV N+R  +SVQQ H  P H+
Sbjct: 105 VRCSSCRFVTEIGVHNRRLPLSVQQGHQLPLHS 137


>ref|XP_003529323.1| PREDICTED: protein LOL2-like [Glycine max]
          Length = 128

 Score =  100 bits (249), Expect = 2e-19
 Identities = 53/90 (58%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
 Frame = +2

Query: 290 PTREVG--QMICGVCRSLISYPKGAGRVKCPGCQTVNHVLEAQQVGLVKCGSCSVLLMYK 463
           P R  G  QM+CG CR L+SYP+GA  VKC  CQTVN VLEA QVG VKCGSC+VLLMY 
Sbjct: 29  PPRPSGWAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYP 88

Query: 464 YEXXXXXXXXXXXXTQIGVDNKRPLISVQQ 553
           Y             T+IG  NKRP  SVQQ
Sbjct: 89  YGASQVRCSSCRFVTEIGAHNKRPPWSVQQ 118


>ref|XP_002519059.1| conserved hypothetical protein [Ricinus communis]
           gi|223541722|gb|EEF43270.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 142

 Score =  100 bits (249), Expect = 2e-19
 Identities = 47/93 (50%), Positives = 58/93 (62%)
 Frame = +2

Query: 290 PTREVGQMICGVCRSLISYPKGAGRVKCPGCQTVNHVLEAQQVGLVKCGSCSVLLMYKYE 469
           P+ E+ QM+CG CR+L+SYP+GA  V+C  CQ VN VLEA +VG V CG C +LLMY Y 
Sbjct: 47  PSSEMAQMVCGSCRTLLSYPRGARHVQCSSCQMVNFVLEAHEVGQVNCGKCEILLMYPYP 106

Query: 470 XXXXXXXXXXXXTQIGVDNKRPLISVQQVHSPS 568
                       T+IG  NKRP  SV Q H P+
Sbjct: 107 ASSVRCSSCCSVTEIGAHNKRPPWSVIQGHPPN 139


>ref|XP_003566876.1| PREDICTED: uncharacterized protein LOC100840817 [Brachypodium
            distachyon]
          Length = 939

 Score = 93.2 bits (230), Expect = 4e-17
 Identities = 44/90 (48%), Positives = 56/90 (62%)
 Frame = +2

Query: 296  REVGQMICGVCRSLISYPKGAGRVKCPGCQTVNHVLEAQQVGLVKCGSCSVLLMYKYEXX 475
            +E+GQM+CG CR L++YP+GA  V+C GC T+N VLEA +VG V CG C  LLMY +   
Sbjct: 841  KEMGQMVCGCCRELLAYPRGAVHVQCAGCLTINLVLEAHEVGKVHCGRCETLLMYPFGAP 900

Query: 476  XXXXXXXXXXTQIGVDNKRPLISVQQVHSP 565
                      T+IG    RP ISV+QV  P
Sbjct: 901  AVKCSLCLFVTEIGERKVRPRISVEQVVPP 930


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