BLASTX nr result
ID: Coptis25_contig00018716
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00018716
(624 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi... 115 6e-37
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t... 87 2e-30
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi... 97 7e-29
emb|CBI27276.3| unnamed protein product [Vitis vinifera] 99 1e-25
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 77 1e-23
>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 115 bits (287), Expect(4) = 6e-37
Identities = 64/138 (46%), Positives = 81/138 (58%), Gaps = 25/138 (18%)
Frame = -3
Query: 418 TIEMYSKLLECGLFPDNYTLPYVLKVCGYLQNCVLGEQIHGDVLKLGFLYDIFVGNSLLV 239
TI++YS++LE GL+PDNYTLPYVLK C LQ+C LGE HG +KLGF +DIFVGN+L+
Sbjct: 89 TIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIA 148
Query: 238 MYSMIEGEK----MFDEMRCHVF**CT---------------------APVKDRGIWGSV 134
MYS + +FDEM H T AP+KDRGIWGS+
Sbjct: 149 MYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSI 208
Query: 133 ISGFFTE*LF*RG*KCFK 80
ISG+ F G + F+
Sbjct: 209 ISGYVQNNCFKEGLQMFR 226
Score = 43.5 bits (101), Expect(4) = 6e-37
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = -2
Query: 95 VEMFQIMWLAGFEPDETVFVSVISACAHLGA 3
++MF++M G EPDE + VS++ ACAHLGA
Sbjct: 222 LQMFRLMQSTGLEPDEAILVSILCACAHLGA 252
Score = 38.1 bits (87), Expect(4) = 6e-37
Identities = 17/34 (50%), Positives = 28/34 (82%)
Frame = -1
Query: 555 QLKQTHAQLITYGLGKNNFAVTRILAY*TAHTLY 454
QLK+ HAQ++T GLG ++FA++R+LA+ +H L+
Sbjct: 20 QLKEAHAQVLTCGLGTDSFALSRLLAF-CSHPLH 52
Score = 23.9 bits (50), Expect(4) = 6e-37
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 476 IEQPTLCIYNTMTITFL 426
I+ PT+CI NTM F+
Sbjct: 65 IQHPTICICNTMIKAFV 81
>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 525
Score = 87.4 bits (215), Expect(5) = 2e-30
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 26/128 (20%)
Frame = -3
Query: 427 YNKTIEMYSKLLECGLFPDNYTLPYVLKVCGYLQNCVLGEQIHGDVLKLGFLYDIFVGNS 248
+ ++++ K+L+ L PDNYT+PYVLK CG +C G+ IHG KLG ++DI+VGNS
Sbjct: 88 FKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHGYSSKLGLVFDIYVGNS 147
Query: 247 LLVMY----SMIEGEKMFDEM----------------------RCHVF**CTAPVKDRGI 146
L+ MY ++ +FDE+ +F AP KD+GI
Sbjct: 148 LMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLF-FDEAPEKDKGI 206
Query: 145 WGSVISGF 122
WG++ISG+
Sbjct: 207 WGAMISGY 214
Score = 42.7 bits (99), Expect(5) = 2e-30
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = -2
Query: 89 MFQIMWLAGFEPDETVFVSVISACAHLGA 3
+F++M L PDE++FVS++SACAHLGA
Sbjct: 226 LFRLMQLTDIVPDESIFVSILSACAHLGA 254
Score = 37.7 bits (86), Expect(5) = 2e-30
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -1
Query: 552 LKQTHAQLITYGLGKNNFAVTRILAY*TAH 463
LKQ HAQ+ T GL N FA++R+LA+ ++H
Sbjct: 21 LKQAHAQVFTTGLENNTFALSRVLAFCSSH 50
Score = 26.9 bits (58), Expect(5) = 2e-30
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 476 IEQPTLCIYNTMTITFL 426
I+ PT+CIYNT+ FL
Sbjct: 67 IQNPTVCIYNTLIKAFL 83
Score = 22.7 bits (47), Expect(5) = 2e-30
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1
Query: 126 GFLQNNCFKE 97
G++QN+CFKE
Sbjct: 213 GYVQNSCFKE 222
>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 97.4 bits (241), Expect(3) = 7e-29
Identities = 59/143 (41%), Positives = 78/143 (54%), Gaps = 26/143 (18%)
Frame = -3
Query: 430 FYNKTIEMYSKLLECGLFPDNYTLPYVLKVCGYLQNCVLGEQIHGDVLKLGFLYDIFVGN 251
FY T +++K+L GL PDNYT+PYVLK C L++C LG+ +HG KLG ++DIFVGN
Sbjct: 86 FYG-TFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGN 144
Query: 250 SLLVMYS----MIEGEKMFDEM----------------------RCHVF**CTAPVKDRG 149
SL+ MYS +I +FDEM +F AP KDRG
Sbjct: 145 SLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLF-FDEAPEKDRG 203
Query: 148 IWGSVISGFFTE*LF*RG*KCFK 80
IWG++ISG+ F G F+
Sbjct: 204 IWGAMISGYVQNSCFKEGLYLFR 226
Score = 40.8 bits (94), Expect(3) = 7e-29
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = -2
Query: 89 MFQIMWLAGFEPDETVFVSVISACAHLGA 3
+F+++ L PDE++FVS++SACAHLGA
Sbjct: 224 LFRLLQLTHVVPDESIFVSILSACAHLGA 252
Score = 35.0 bits (79), Expect(3) = 7e-29
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = -1
Query: 552 LKQTHAQLITYGLGKNNFAVTRILAY 475
LKQ HAQ+ T GL N FA++R+LA+
Sbjct: 21 LKQAHAQVFTTGLDTNTFALSRLLAF 46
>emb|CBI27276.3| unnamed protein product [Vitis vinifera]
Length = 248
Score = 98.6 bits (244), Expect(2) = 1e-25
Identities = 54/117 (46%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Frame = -3
Query: 418 TIEMYSKLLECGLFPDNYTLPYVLKVCGYLQNCVLGEQIHGDVLKLGFLYDIFVGNSLLV 239
TI++YS++LE GL+PDNYTLPYVLK C LQ+C LGE HG +KLGF +DIFVGN+L+
Sbjct: 14 TIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIA 73
Query: 238 MYSMIEGEK----MFDEMRCHVF**CTAPVKDRGIWGSVISGFFTE*LF*RG*KCFK 80
MYS + +FDEM H W +ISG+ F G + F+
Sbjct: 74 MYSSFGNVRAARCIFDEMPWHT----------AVSWTVMISGYAKNNCFKEGLQMFR 120
Score = 43.5 bits (101), Expect(2) = 1e-25
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = -2
Query: 95 VEMFQIMWLAGFEPDETVFVSVISACAHLGA 3
++MF++M G EPDE + VS++ ACAHLGA
Sbjct: 116 LQMFRLMQSTGLEPDEAILVSILCACAHLGA 146
>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 76.6 bits (187), Expect(4) = 1e-23
Identities = 52/139 (37%), Positives = 67/139 (48%), Gaps = 27/139 (19%)
Frame = -3
Query: 415 IEMYSKLLECGLFPDNYTLPYVLKVCGYLQNCVLGEQIHGDVLKLGFLYDIFVGNSLLVM 236
I ++S + G+ PD YTLPYVLK + N LGE IH +KLG + FVGNSLLVM
Sbjct: 90 IAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVM 149
Query: 235 Y----SMIEGEKMFDEM-----------------------RCHVF**CTAPVKDRGIWGS 137
Y +M ++FDEM +F A VKD GIWG+
Sbjct: 150 YRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELF--DMATVKDTGIWGA 207
Query: 136 VISGFFTE*LF*RG*KCFK 80
+ISG+ F G F+
Sbjct: 208 MISGYVQNNCFKEGLHMFR 226
Score = 41.6 bits (96), Expect(4) = 1e-23
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = -2
Query: 95 VEMFQIMWLAGFEPDETVFVSVISACAHLGA 3
+ MF++M L EPDE + V+++SACAH+GA
Sbjct: 222 LHMFRLMQLTEVEPDEAIIVTILSACAHMGA 252
Score = 32.0 bits (71), Expect(4) = 1e-23
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -1
Query: 555 QLKQTHAQLITYGLGKNNFAVTRILAY 475
QLKQ HAQ++ GL +NF ++R+L +
Sbjct: 20 QLKQAHAQVLKSGLHNSNFVLSRLLNF 46
Score = 24.6 bits (52), Expect(4) = 1e-23
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 476 IEQPTLCIYNTM 441
I+ PT+CI+NTM
Sbjct: 65 IQHPTICIFNTM 76