BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018676
         (554 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532893.1| pentatricopeptide repeat-containing protein,...   276   2e-72
emb|CBI16890.3| unnamed protein product [Vitis vinifera]              261   5e-68
ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containi...   261   5e-68
emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]   261   5e-68
ref|XP_002329310.1| predicted protein [Populus trichocarpa] gi|2...   259   2e-67

>ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527353|gb|EEF29498.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 625

 Score =  276 bits (706), Expect = 2e-72
 Identities = 133/184 (72%), Positives = 157/184 (85%), Gaps = 4/184 (2%)
 Frame = -2

Query: 541 KALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCNTLI 362
           +ALRL +EME +GL P++VTYNS+LRKLCE G+++DAN LLNEMS+KKIEPDNVTCNTLI
Sbjct: 321 QALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLI 380

Query: 361 NAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDAGFS 182
           NAYCKIGDM+SA K +N+M+E GL  DQFTYKALIHGFCK REMD AKELL  MLDAGFS
Sbjct: 381 NAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFS 440

Query: 181 PNYSVYSWILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKI 14
           P+Y  YSW++DGYCNQ NE+A+L+LPDE     L VD S+YRALIRRFCK E + YA+KI
Sbjct: 441 PSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKI 500

Query: 13  FTLM 2
           F+LM
Sbjct: 501 FSLM 504



 Score =  114 bits (285), Expect = 1e-23
 Identities = 65/187 (34%), Positives = 104/187 (55%), Gaps = 4/187 (2%)
 Frame = -2

Query: 550 MTSKALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCN 371
           +T    ++ ++M   G+  +I  YN L+   C++G ++ A+NLL+EM  K + PD  T N
Sbjct: 180 LTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYN 239

Query: 370 TLINAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDA 191
           TLI+ YCK G    A   +++M   G+  D  TY +LIHGFCK   M +A  L  ++ DA
Sbjct: 240 TLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDA 299

Query: 190 GFSPNYSVYSWILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYA 23
             +PN+  Y+ ++DGYC   + D  LRL +E+    L   +  Y +++R+ C+   I  A
Sbjct: 300 --TPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDA 357

Query: 22  QKIFTLM 2
            K+   M
Sbjct: 358 NKLLNEM 364



 Score = 79.7 bits (195), Expect = 3e-13
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 4/174 (2%)
 Frame = -2

Query: 538 ALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCNTLIN 359
           AL++   M   GL     TY +L+   C+  +M  A  LL  M D    P   T + L++
Sbjct: 392 ALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVD 451

Query: 358 AYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDAGFSP 179
            YC   + E+  K  ++ +  GL  D+  Y+ALI  FCK  ++D AK++   M + G   
Sbjct: 452 GYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLG 511

Query: 178 NYSVYSWILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIV 29
           +  +Y+ +   Y   G  +A   L DE+    L++ + IYRAL   +  G+N +
Sbjct: 512 DSVIYTSLAYAYWKLGKANAASDLLDEMYKRRLMITLKIYRALNASYA-GDNSI 564



 Score = 65.5 bits (158), Expect = 6e-09
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
 Frame = -2

Query: 439 KDANNLLNEMSDKKIEPDNVTCNTLINAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKAL 260
           ++A  +   M      P    C  L+N+  K    +  WK   KM   G+  +   Y  L
Sbjct: 147 QEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVL 206

Query: 259 IHGFCKTREMDKAKELLFDMLDAGFSPNYSVYSWILDGYCNQGNEDAILRLPDEL----L 92
           IH  CK+ +++KA  LL +M      P+   Y+ ++  YC +G     L + D +    +
Sbjct: 207 IHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGI 266

Query: 91  LVDISIYRALIRRFCKGENIVYAQKIF 11
             DI  Y +LI  FCK   +  A ++F
Sbjct: 267 KPDIVTYNSLIHGFCKEGRMREAMRLF 293


>emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  261 bits (667), Expect = 5e-68
 Identities = 126/184 (68%), Positives = 153/184 (83%), Gaps = 4/184 (2%)
 Frame = -2

Query: 541 KALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCNTLI 362
           +ALRL + ME++GL P +VTYNS+LRKLCE G++KDAN LLNEMS++K+EPDNVTCNTLI
Sbjct: 311 EALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLI 370

Query: 361 NAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDAGFS 182
           NAYCKIGDM SA K + KMLE GL  DQFT+KALIHGFCK  E+D AKE LF+MLDAGFS
Sbjct: 371 NAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFS 430

Query: 181 PNYSVYSWILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKI 14
           P+YS YSW++D Y +Q N++A++RLPDEL    L VDIS+YRALIRR CK + I  A++I
Sbjct: 431 PSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERI 490

Query: 13  FTLM 2
           FTLM
Sbjct: 491 FTLM 494



 Score = 92.0 bits (227), Expect = 6e-17
 Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 5/184 (2%)
 Frame = -2

Query: 550 MTSKALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCN 371
           +T+   ++ ++M   G++P+I  +N L+   C++G ++ A  LLNEM  + I PD  T N
Sbjct: 202 LTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYN 261

Query: 370 TLINAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCK-TREMDKAKELLFDMLD 194
           TLI+ YCK G    A   +++M  GG+  D  TY +LI+GFC+   ++++A  L   M  
Sbjct: 262 TLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEV 321

Query: 193 AGFSPNYSVYSWILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVY 26
            G  P    Y+ IL   C +G      RL +E+    +  D      LI  +CK  ++  
Sbjct: 322 EGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGS 381

Query: 25  AQKI 14
           A K+
Sbjct: 382 AMKV 385



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
 Frame = -2

Query: 550 MTSKALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCN 371
           MT  A+++ + M + G  P +     LL  L +A        +  +M    + P+    N
Sbjct: 167 MTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFN 226

Query: 370 TLINAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDA 191
            LI+A CK GD+E A +  N+M    +  D FTY  LI  +CK     +A  +   M   
Sbjct: 227 VLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERG 286

Query: 190 GFSPNYSVYSWILDGYCNQGNE-DAILRLPD----ELLLVDISIYRALIRRFCKGENIVY 26
           G SP+   Y+ ++ G+C + N+ +  LRL +    E L   +  Y +++R+ C+   I  
Sbjct: 287 GVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKD 346

Query: 25  AQKIFTLM 2
           A ++   M
Sbjct: 347 ANRLLNEM 354


>ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  261 bits (667), Expect = 5e-68
 Identities = 126/184 (68%), Positives = 153/184 (83%), Gaps = 4/184 (2%)
 Frame = -2

Query: 541 KALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCNTLI 362
           +ALRL + ME++GL P +VTYNS+LRKLCE G++KDAN LLNEMS++K+EPDNVTCNTLI
Sbjct: 318 EALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLI 377

Query: 361 NAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDAGFS 182
           NAYCKIGDM SA K + KMLE GL  DQFT+KALIHGFCK  E+D AKE LF+MLDAGFS
Sbjct: 378 NAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFS 437

Query: 181 PNYSVYSWILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKI 14
           P+YS YSW++D Y +Q N++A++RLPDEL    L VDIS+YRALIRR CK + I  A++I
Sbjct: 438 PSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERI 497

Query: 13  FTLM 2
           FTLM
Sbjct: 498 FTLM 501



 Score =  107 bits (267), Expect = 1e-21
 Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 4/187 (2%)
 Frame = -2

Query: 550 MTSKALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCN 371
           +T+   ++ ++M   G++P+I  +N L+   C++G ++ A  LLNEM  + I PD  T N
Sbjct: 177 LTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYN 236

Query: 370 TLINAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDA 191
           TLI+ YCK G    A   +++M  GG+  D  TY +LI+GFC+   M +A  L  ++   
Sbjct: 237 TLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--N 294

Query: 190 GFSPNYSVYSWILDGYCNQGNEDAILRLPD----ELLLVDISIYRALIRRFCKGENIVYA 23
           G +PN+  Y+ ++DGYC   + +  LRL +    E L   +  Y +++R+ C+   I  A
Sbjct: 295 GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDA 354

Query: 22  QKIFTLM 2
            ++   M
Sbjct: 355 NRLLNEM 361


>emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  261 bits (667), Expect = 5e-68
 Identities = 126/184 (68%), Positives = 153/184 (83%), Gaps = 4/184 (2%)
 Frame = -2

Query: 541 KALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCNTLI 362
           +ALRL + ME++GL P +VTYNS+LRKLCE G++KDAN LLNEMS++K+EPDNVTCNTLI
Sbjct: 318 EALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLI 377

Query: 361 NAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDAGFS 182
           NAYCKIGDM SA K + KMLE GL  DQFT+KALIHGFCK  E+D AKE LF+MLDAGFS
Sbjct: 378 NAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFS 437

Query: 181 PNYSVYSWILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKI 14
           P+YS YSW++D Y +Q N++A++RLPDEL    L VDIS+YRALIRR CK + I  A++I
Sbjct: 438 PSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERI 497

Query: 13  FTLM 2
           FTLM
Sbjct: 498 FTLM 501



 Score =  107 bits (267), Expect = 1e-21
 Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 4/187 (2%)
 Frame = -2

Query: 550 MTSKALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCN 371
           +T+   ++ ++M   G++P+I  +N L+   C++G ++ A  LLNEM  + I PD  T N
Sbjct: 177 LTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYN 236

Query: 370 TLINAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDA 191
           TLI+ YCK G    A   +++M  GG+  D  TY +LI+GFC+   M +A  L  ++   
Sbjct: 237 TLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--N 294

Query: 190 GFSPNYSVYSWILDGYCNQGNEDAILRLPD----ELLLVDISIYRALIRRFCKGENIVYA 23
           G +PN+  Y+ ++DGYC   + +  LRL +    E L   +  Y +++R+ C+   I  A
Sbjct: 295 GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDA 354

Query: 22  QKIFTLM 2
            ++   M
Sbjct: 355 NRLLNEM 361


>ref|XP_002329310.1| predicted protein [Populus trichocarpa] gi|222870764|gb|EEF07895.1|
           predicted protein [Populus trichocarpa]
          Length = 593

 Score =  259 bits (663), Expect = 2e-67
 Identities = 124/184 (67%), Positives = 152/184 (82%), Gaps = 4/184 (2%)
 Frame = -2

Query: 541 KALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCNTLI 362
           +ALRL + M  KGL P+++TYNS+LRKLCE G+++DAN LLNEMS++KIEPDNVTCNTLI
Sbjct: 327 EALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLI 386

Query: 361 NAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDAGFS 182
           NAYCKIGDM SA K ++KM+  GL  DQFTYKALIHGFCK +E+DKAKELLF M+DAGFS
Sbjct: 387 NAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFS 446

Query: 181 PNYSVYSWILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKI 14
           P+Y  YSW++D YC Q NE+A+++LPDEL    L VD+S+YRALIRRFCK E I  AQ++
Sbjct: 447 PSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRV 506

Query: 13  FTLM 2
             LM
Sbjct: 507 LGLM 510



 Score =  108 bits (271), Expect = 4e-22
 Identities = 59/174 (33%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
 Frame = -2

Query: 550 MTSKALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCN 371
           +T    ++ ++M   G++ +I  YN LL   C++G ++ A  +L+EM  K + PD  T N
Sbjct: 186 LTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYN 245

Query: 370 TLINAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDA 191
           TLI+ YCK G    A   +++M   G+  D FTY +LI+GFC+   M +A +L  D+ D 
Sbjct: 246 TLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIKDV 305

Query: 190 GFSPNYSVYSWILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKG 41
             +PN+  Y+ ++DGYC   + D  LRL + +    L   +  Y +++R+ C+G
Sbjct: 306 --TPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEG 357



 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 4/174 (2%)
 Frame = -2

Query: 538 ALRLCQEMELKGLLPSIVTYNSLLRKLCEAGQMKDANNLLNEMSDKKIEPDNVTCNTLIN 359
           AL++  +M   GL     TY +L+   C+A ++  A  LL  M D    P   T + L++
Sbjct: 398 ALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVD 457

Query: 358 AYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALIHGFCKTREMDKAKELLFDMLDAGFSP 179
           +YCK  + E+  K  ++++  GL  D   Y+ALI  FCK  ++D A+ +L  M D G   
Sbjct: 458 SYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFG 517

Query: 178 NYSVYSWILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIV 29
           +  VY+ +  GY   G  +    + DE+    L++ + IYR+    +    +I+
Sbjct: 518 DSVVYTSLAYGYWKVGKVNVTSDILDEMYKKRLMITLKIYRSFNASYASDNSIL 571



 Score = 64.7 bits (156), Expect = 9e-09
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
 Frame = -2

Query: 436 DANNLLNEMSDKKIEPDNVTCNTLINAYCKIGDMESAWKFRNKMLEGGLVQDQFTYKALI 257
           +A  +   M      P    C  L+N+  K    ++ WK   KM++ G+V +   Y  L+
Sbjct: 154 EAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLL 213

Query: 256 HGFCKTREMDKAKELLFDMLDAGFSPNYSVYSWILDGYCNQGNEDAILRLPDELLLV--- 86
           H  CK+ +++KA+++L +M      P+   Y+ ++  YC +G     L + D + +    
Sbjct: 214 HACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGIS 273

Query: 85  -DISIYRALIRRFCKGENIVYAQKIF 11
            DI  Y +LI  FC+   +  A ++F
Sbjct: 274 PDIFTYNSLIYGFCREGRMREAVQLF 299