BLASTX nr result

ID: Coptis25_contig00018667 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018667
         (423 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280648.1| PREDICTED: uncharacterized protein LOC100252...    59   4e-08
ref|XP_002531175.1| conserved hypothetical protein [Ricinus comm...    58   5e-08
gb|AFK41034.1| unknown [Medicago truncatula]                           59   8e-08
ref|XP_002308353.1| predicted protein [Populus trichocarpa] gi|2...    58   1e-07
ref|NP_001057095.1| Os06g0206200 [Oryza sativa Japonica Group] g...    60   2e-07

>ref|XP_002280648.1| PREDICTED: uncharacterized protein LOC100252017 [Vitis vinifera]
           gi|297739803|emb|CBI29985.3| unnamed protein product
           [Vitis vinifera]
          Length = 158

 Score = 58.5 bits (140), Expect(2) = 4e-08
 Identities = 24/54 (44%), Positives = 34/54 (62%)
 Frame = -2

Query: 407 GEWTITSVLHDVTXXXXXXXXXXXXXXXGLNSGLSFVQKHVKGPKWVSFVVGLP 246
           GEWTITSVLHD T               G+N+G+ ++Q  V+GPKW+ F++G+P
Sbjct: 45  GEWTITSVLHDATAVAGAGIGGMLSAVYGINTGIPYIQNRVRGPKWLPFIIGMP 98



 Score = 23.9 bits (50), Expect(2) = 4e-08
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 210 GGYAFPKFVQL 178
           GGYA PKF QL
Sbjct: 111 GGYALPKFAQL 121


>ref|XP_002531175.1| conserved hypothetical protein [Ricinus communis]
           gi|223529245|gb|EEF31218.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 158

 Score = 58.2 bits (139), Expect(2) = 5e-08
 Identities = 27/54 (50%), Positives = 33/54 (61%)
 Frame = -2

Query: 407 GEWTITSVLHDVTXXXXXXXXXXXXXXXGLNSGLSFVQKHVKGPKWVSFVVGLP 246
           GEWTITSVLHD T               G N+G+ F+Q  +KGPKW+S +VGLP
Sbjct: 45  GEWTITSVLHDATAVAGSGIGGMLSAVHGFNTGIPFLQNRLKGPKWLSLLVGLP 98



 Score = 23.9 bits (50), Expect(2) = 5e-08
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 210 GGYAFPKFVQL 178
           GGYA PKF QL
Sbjct: 111 GGYALPKFAQL 121


>gb|AFK41034.1| unknown [Medicago truncatula]
          Length = 158

 Score = 58.9 bits (141), Expect(2) = 8e-08
 Identities = 28/56 (50%), Positives = 34/56 (60%)
 Frame = -2

Query: 413 EIGEWTITSVLHDVTXXXXXXXXXXXXXXXGLNSGLSFVQKHVKGPKWVSFVVGLP 246
           E GEWTIT VLHD T               GLN+GL ++Q  +KGPKW+ FVVG+P
Sbjct: 43  ERGEWTITPVLHDATAIVGSGVGGMLSAVHGLNNGLPYLQNRLKGPKWLPFVVGIP 98



 Score = 22.3 bits (46), Expect(2) = 8e-08
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 210 GGYAFPKFVQL 178
           GGY  PKF QL
Sbjct: 111 GGYVLPKFAQL 121


>ref|XP_002308353.1| predicted protein [Populus trichocarpa] gi|222854329|gb|EEE91876.1|
           predicted protein [Populus trichocarpa]
          Length = 158

 Score = 58.2 bits (139), Expect(2) = 1e-07
 Identities = 26/54 (48%), Positives = 33/54 (61%)
 Frame = -2

Query: 407 GEWTITSVLHDVTXXXXXXXXXXXXXXXGLNSGLSFVQKHVKGPKWVSFVVGLP 246
           GEWTITS+LHD T               G N+G+ F+Q  +KGPKW+ F+VGLP
Sbjct: 45  GEWTITSILHDATAVAGSGIGGMLSAVHGFNTGIPFLQNRLKGPKWLPFLVGLP 98



 Score = 22.3 bits (46), Expect(2) = 1e-07
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 210 GGYAFPKFVQL 178
           GGY  PKF QL
Sbjct: 111 GGYVLPKFAQL 121


>ref|NP_001057095.1| Os06g0206200 [Oryza sativa Japonica Group]
           gi|51091152|dbj|BAD35847.1| gb protein-like [Oryza
           sativa Japonica Group] gi|113595135|dbj|BAF19009.1|
           Os06g0206200 [Oryza sativa Japonica Group]
           gi|215704272|dbj|BAG93112.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|222635159|gb|EEE65291.1| hypothetical protein
           OsJ_20523 [Oryza sativa Japonica Group]
          Length = 159

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/54 (50%), Positives = 33/54 (61%)
 Frame = -2

Query: 407 GEWTITSVLHDVTXXXXXXXXXXXXXXXGLNSGLSFVQKHVKGPKWVSFVVGLP 246
           G+W ITSVLHD T               G N+G+ FVQKHVKGPKW+  +VG+P
Sbjct: 47  GDWAITSVLHDATAVAGSGAGAMLSAVHGFNTGIPFVQKHVKGPKWLQLLVGVP 100


Top