BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018660
         (696 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

prf||1011228A cytochrome b559                                         233   3e-59
pir||T14570 cytochrome b559 component psbE - beet chloroplast gi...   185   9e-45
ref|XP_004162281.1| PREDICTED: LOW QUALITY PROTEIN: cytochrome b...   177   1e-43
ref|XP_003605589.1| Cytochrome b559 subunit alpha [Medicago trun...   180   2e-43
ref|XP_002888378.1| hypothetical protein ARALYDRAFT_894035 [Arab...   180   3e-43

>prf||1011228A cytochrome b559
          Length = 122

 Score =  233 bits (594), Expect = 3e-59
 Identities = 117/125 (93%), Positives = 119/125 (95%)
 Frame = +2

Query: 320 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR 499
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTE+R
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 500 QGIPLITGRFDSLAQLDEFSRSF*EVPMTIDRTYPIFTVRWLAVHGLAVPTVFFLGSISA 679
           QGIPLITGRFDSL QLDEFSRSF    MTIDRTYPIFTVRWLA+HGLAVPTV FLGSISA
Sbjct: 61  QGIPLITGRFDSLEQLDEFSRSF----MTIDRTYPIFTVRWLAIHGLAVPTVSFLGSISA 116

Query: 680 MQFIQ 694
           MQFIQ
Sbjct: 117 MQFIQ 121


>pir||T14570 cytochrome b559 component psbE - beet chloroplast
           gi|860891|emb|CAA60967.1| PSII cytochome b559 alpha
           chain [Beta vulgaris subsp. vulgaris]
           gi|860897|emb|CAA60972.1| PSII cytochrome b599 alpha
           chain [Beta vulgaris subsp. vulgaris]
          Length = 118

 Score =  185 bits (469), Expect = 9e-45
 Identities = 91/93 (97%), Positives = 92/93 (98%)
 Frame = +2

Query: 290 LTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSP 469
           LTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSP
Sbjct: 26  LTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSP 85

Query: 470 RPNEYFTENRQGIPLITGRFDSLAQLDEFSRSF 568
           RPNEYFTE+RQGIPLITGRFDSL QLDEFSRSF
Sbjct: 86  RPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 118


>ref|XP_004162281.1| PREDICTED: LOW QUALITY PROTEIN: cytochrome b559 subunit alpha-like
           [Cucumis sativus]
          Length = 132

 Score =  177 bits (448), Expect(2) = 1e-43
 Identities = 89/95 (93%), Positives = 90/95 (94%)
 Frame = +2

Query: 284 PSLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFG 463
           P LTVQEYVEL MSGSTGERSFADIITSIRYWVIHS  IPSLFIAGWLFVSTGLAYDVFG
Sbjct: 39  PLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSX-IPSLFIAGWLFVSTGLAYDVFG 97

Query: 464 SPRPNEYFTENRQGIPLITGRFDSLAQLDEFSRSF 568
           SPRPNEYFTE+RQGIPLITGRFDSL QLDEFSRSF
Sbjct: 98  SPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 132



 Score = 26.2 bits (56), Expect(2) = 1e-43
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = +1

Query: 241 VVFDLLIPSFTESIPL 288
           V F LLI SFTESIPL
Sbjct: 25  VNFHLLISSFTESIPL 40


>ref|XP_003605589.1| Cytochrome b559 subunit alpha [Medicago truncatula]
           gi|355506644|gb|AES87786.1| Cytochrome b559 subunit
           alpha [Medicago truncatula]
          Length = 153

 Score =  180 bits (457), Expect = 2e-43
 Identities = 91/114 (79%), Positives = 94/114 (82%)
 Frame = +2

Query: 320 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR 499
           MSGSTGERSFADIITSIRYW+IHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTE+R
Sbjct: 1   MSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 500 QGIPLITGRFDSLAQLDEFSRSF*EVPMTIDRTYPIFTVRWLAVHGLAVPTVFF 661
           QGIPLITGRFDSL QLDEF                   +RWLAVHGLAVPTVFF
Sbjct: 61  QGIPLITGRFDSLEQLDEF-------------------IRWLAVHGLAVPTVFF 95


>ref|XP_002888378.1| hypothetical protein ARALYDRAFT_894035 [Arabidopsis lyrata subsp.
           lyrata] gi|297334219|gb|EFH64637.1| hypothetical protein
           ARALYDRAFT_894035 [Arabidopsis lyrata subsp. lyrata]
          Length = 136

 Score =  180 bits (456), Expect = 3e-43
 Identities = 92/119 (77%), Positives = 97/119 (81%)
 Frame = +2

Query: 320 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR 499
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTE+R
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 500 QGIPLITGRFDSLAQLDEFSRSF*EVPMTIDRTYPIFTVRWLAVHGLAVPTVFFLGSIS 676
           QGIPLITGRFD L QLDEF                   +RWLAVHGLAVPTV FLG+++
Sbjct: 61  QGIPLITGRFDPLEQLDEF-------------------MRWLAVHGLAVPTVSFLGAMT 100