BLASTX nr result

ID: Coptis25_contig00018650 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018650
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332203.1| predicted protein [Populus trichocarpa] gi|2...    76   3e-12
emb|CBI29229.3| unnamed protein product [Vitis vinifera]               75   5e-12
ref|XP_002266353.1| PREDICTED: uncharacterized protein LOC100256...    75   5e-12
emb|CAN69042.1| hypothetical protein VITISV_022340 [Vitis vinifera]    75   5e-12
ref|XP_002513407.1| conserved hypothetical protein [Ricinus comm...    67   2e-09

>ref|XP_002332203.1| predicted protein [Populus trichocarpa] gi|222875310|gb|EEF12441.1|
           predicted protein [Populus trichocarpa]
          Length = 411

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/79 (49%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
 Frame = +1

Query: 43  PSTPIHKPGFPTIQIMYKTTG-TRPKKKMYHRVHELDKVMDFQXXXXXXXXXXXXXXNQK 219
           P TP  KPG   I    K++G  RPKKK+YHRV +LD+ MD Q              +QK
Sbjct: 29  PPTPFQKPGSIWIPSRQKSSGGRRPKKKIYHRVQDLDRAMDLQKKPSLILQLKSILQSQK 88

Query: 220 HQSIRVRDLEKEVGFVKKW 276
           +QS+ +RDLEKEVGFV+KW
Sbjct: 89  NQSLLLRDLEKEVGFVQKW 107


>emb|CBI29229.3| unnamed protein product [Vitis vinifera]
          Length = 444

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +1

Query: 55  IHKPGFPTIQIMYKTTG-TRPKKKMYHRVHELDKVMDFQXXXXXXXXXXXXXXNQKHQSI 231
           + + G   +QIM+ ++G  RPKKK+YHRVHELD+VMD +              +QKHQS+
Sbjct: 68  VQRLGSVWVQIMHISSGGRRPKKKIYHRVHELDRVMDLKKKPCLILQLKSIIQSQKHQSL 127

Query: 232 RVRDLEKEVGFVKKW 276
            +RDLEK+VGFV KW
Sbjct: 128 LLRDLEKQVGFVHKW 142


>ref|XP_002266353.1| PREDICTED: uncharacterized protein LOC100256382 [Vitis vinifera]
          Length = 409

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +1

Query: 55  IHKPGFPTIQIMYKTTG-TRPKKKMYHRVHELDKVMDFQXXXXXXXXXXXXXXNQKHQSI 231
           + + G   +QIM+ ++G  RPKKK+YHRVHELD+VMD +              +QKHQS+
Sbjct: 33  VQRLGSVWVQIMHISSGGRRPKKKIYHRVHELDRVMDLKKKPCLILQLKSIIQSQKHQSL 92

Query: 232 RVRDLEKEVGFVKKW 276
            +RDLEK+VGFV KW
Sbjct: 93  LLRDLEKQVGFVHKW 107


>emb|CAN69042.1| hypothetical protein VITISV_022340 [Vitis vinifera]
          Length = 374

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +1

Query: 55  IHKPGFPTIQIMYKTTG-TRPKKKMYHRVHELDKVMDFQXXXXXXXXXXXXXXNQKHQSI 231
           + + G   +QIM+ ++G  RPKKK+YHRVHELD+VMD +              +QKHQS+
Sbjct: 53  VQRLGSVWVQIMHISSGGRRPKKKIYHRVHELDRVMDLKKKPCLILQLKSIIQSQKHQSL 112

Query: 232 RVRDLEKEVGFVKKW 276
            +RDLEK+VGFV KW
Sbjct: 113 LLRDLEKQVGFVHKW 127


>ref|XP_002513407.1| conserved hypothetical protein [Ricinus communis]
           gi|223547315|gb|EEF48810.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 413

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 31/58 (53%), Positives = 40/58 (68%)
 Frame = +1

Query: 103 GTRPKKKMYHRVHELDKVMDFQXXXXXXXXXXXXXXNQKHQSIRVRDLEKEVGFVKKW 276
           G R KKK+YHRV+ELD+VMD Q              +QK+Q +R+RDLEK+VGFV+KW
Sbjct: 58  GRRAKKKIYHRVYELDRVMDLQKKPSLILHLRSIIQSQKNQYLRLRDLEKQVGFVQKW 115


Top