BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018600
         (594 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containi...   203   2e-50
ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi...   200   2e-49
emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]   200   2e-49
ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containi...   197   1e-48
emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]   197   1e-48

>ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Vitis vinifera]
          Length = 382

 Score =  203 bits (517), Expect = 2e-50
 Identities = 100/196 (51%), Positives = 135/196 (68%)
 Frame = -3

Query: 589 IVIQAFCGMGNMDNAVLLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSEMIWARMEKK 410
           IVI   C MG+MD+AV +LDEME K ++P+L TFN LL   Y  GRFL+ E IW RMEKK
Sbjct: 170 IVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKK 229

Query: 409 QIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETKPNTISYNALIRGYCNDGKLDEA 230
            I+PDIRSYNAKL GLV   ++ E + LVE ++TK  KP+  S+NALI+G+CNDGK+DEA
Sbjct: 230 NILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEA 289

Query: 229 KRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIEAGLVQTVVEG 50
              Y  + +++ +P++ T+  L+P  CEKG +  A +LC++     C ++  L+Q  V+G
Sbjct: 290 TNWYGKMRENDCLPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVDG 349

Query: 49  LVKMSKVDEAKNLVSL 2
           LVK  KV EAK LV L
Sbjct: 350 LVKGGKVVEAKKLVQL 365



 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 1/184 (0%)
 Frame = -3

Query: 562 GNMDNAVLLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSEMIWARMEKK-QIVPDIRS 386
           G  D+A  + DEM  +  + ++ +FN LL A     +F   E  ++ +  K  + PD+ S
Sbjct: 108 GMFDHAFKVFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFFSELPSKLSVEPDLVS 167

Query: 385 YNAKLRGLVVAGKIKEAVKLVESLKTKETKPNTISYNALIRGYCNDGKLDEAKRVYDDLL 206
           YN  + GL   G +  AV +++ ++ K  +P+ I++N L+ G    G+  + ++++  + 
Sbjct: 168 YNIVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRME 227

Query: 205 KDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIEAGLVQTVVEGLVKMSKVD 26
           K  ++P+  +Y   L  +  +   +  + L E+      + +      +++G     KVD
Sbjct: 228 KKNILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVD 287

Query: 25  EAKN 14
           EA N
Sbjct: 288 EATN 291


>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial [Vitis vinifera]
          Length = 383

 Score =  200 bits (508), Expect = 2e-49
 Identities = 101/197 (51%), Positives = 136/197 (69%), Gaps = 1/197 (0%)
 Frame = -3

Query: 589 IVIQAFCGMGNMDNAVLLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSEMIWARMEKK 410
           IVI+  C MG+MD+AV +LDEME K ++P+L TFN LL   Y  GRFL+ E IW RMEKK
Sbjct: 170 IVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKK 229

Query: 409 QIVPDIRSYNAKLRGLVVAGK-IKEAVKLVESLKTKETKPNTISYNALIRGYCNDGKLDE 233
            I+PDIRSYNAKL GLV + K + E + LVE ++TK  KP+  S+NALI+G+CNDGK+DE
Sbjct: 230 NILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDE 289

Query: 232 AKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIEAGLVQTVVE 53
           A   Y  + +++  P++ T+  L+P  CEKG +  A +LC++     C ++  L+Q  V+
Sbjct: 290 ATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVD 349

Query: 52  GLVKMSKVDEAKNLVSL 2
           GLVK  KV EAK LV L
Sbjct: 350 GLVKGGKVVEAKKLVQL 366



 Score = 75.1 bits (183), Expect = 8e-12
 Identities = 46/193 (23%), Positives = 95/193 (49%), Gaps = 2/193 (1%)
 Frame = -3

Query: 586 VIQAFCGMGNMDNAVLLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSEMIWARMEKK- 410
           +I  +   G  D+A  + DEM  +  + ++ +FN LL A     +F   E  ++ +  K 
Sbjct: 100 LISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPSKL 159

Query: 409 QIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETKPNTISYNALIRGYCNDGKLDEA 230
            + PD+ SYN  ++GL   G +  AV +++ ++ K  +P+ I++N L+ G    G+  + 
Sbjct: 160 SVEPDLVSYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDG 219

Query: 229 KRVYDDLLKDELVPNRWTYEI-LLPAVCEKGDYVYALKLCEKSLENSCRIEAGLVQTVVE 53
           ++++  + K  ++P+  +Y   L+  V  +   +  + L E+      + +      +++
Sbjct: 220 EKIWGRMEKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIK 279

Query: 52  GLVKMSKVDEAKN 14
           G     KVDEA N
Sbjct: 280 GFCNDGKVDEATN 292


>emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
          Length = 383

 Score =  200 bits (508), Expect = 2e-49
 Identities = 101/197 (51%), Positives = 136/197 (69%), Gaps = 1/197 (0%)
 Frame = -3

Query: 589 IVIQAFCGMGNMDNAVLLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSEMIWARMEKK 410
           IVI+  C MG+MD+AV +LDEME K ++P+L TFN LL   Y  GRFL+ E IW RMEKK
Sbjct: 170 IVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNRXYTSGRFLDGEKIWGRMEKK 229

Query: 409 QIVPDIRSYNAKLRGLVVAGK-IKEAVKLVESLKTKETKPNTISYNALIRGYCNDGKLDE 233
            I+PDIRSYNAKL GLV + K + E + LVE ++TK  KP+  S+NALI+G+CNDGK+DE
Sbjct: 230 NILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDE 289

Query: 232 AKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIEAGLVQTVVE 53
           A   Y  + +++  P++ T+  L+P  CEKG +  A +LC++     C ++  L+Q  V+
Sbjct: 290 ATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVD 349

Query: 52  GLVKMSKVDEAKNLVSL 2
           GLVK  KV EAK LV L
Sbjct: 350 GLVKGGKVVEAKKLVQL 366



 Score = 71.6 bits (174), Expect = 9e-11
 Identities = 45/193 (23%), Positives = 94/193 (48%), Gaps = 2/193 (1%)
 Frame = -3

Query: 586 VIQAFCGMGNMDNAVLLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSEMIWARMEKK- 410
           +I  +   G  D+A  + DEM  +  + ++ +FN LL A     +F   E  ++ +  K 
Sbjct: 100 LISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNXLLGACVXSKKFDKVEGFFSELPSKL 159

Query: 409 QIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETKPNTISYNALIRGYCNDGKLDEA 230
            + PD+ SYN  ++GL   G +  AV +++ ++ K  +P+ I++N L+      G+  + 
Sbjct: 160 SVEPDLVSYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNRXYTSGRFLDG 219

Query: 229 KRVYDDLLKDELVPNRWTYEI-LLPAVCEKGDYVYALKLCEKSLENSCRIEAGLVQTVVE 53
           ++++  + K  ++P+  +Y   L+  V  +   +  + L E+      + +      +++
Sbjct: 220 EKIWGRMEKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIK 279

Query: 52  GLVKMSKVDEAKN 14
           G     KVDEA N
Sbjct: 280 GFCNDGKVDEATN 292


>ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13150-like [Vitis vinifera]
          Length = 379

 Score =  197 bits (501), Expect = 1e-48
 Identities = 92/196 (46%), Positives = 139/196 (70%)
 Frame = -3

Query: 589 IVIQAFCGMGNMDNAVLLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSEMIWARMEKK 410
           I++ AFC MG++D+A+ +LDEME  G++P+L TFN LL AFY++G + + E IW  M+K 
Sbjct: 168 IIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKN 227

Query: 409 QIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETKPNTISYNALIRGYCNDGKLDEA 230
            + P++RSYNAKLRG++   ++ EAV+L++ +KT   KP+  + N+L++G+CN G L+EA
Sbjct: 228 NVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEA 287

Query: 229 KRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIEAGLVQTVVEG 50
           KR Y ++ ++EL P R TY  L+P + EKGD+  A +LC++       IE  L+Q V+EG
Sbjct: 288 KRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEPALLQQVLEG 347

Query: 49  LVKMSKVDEAKNLVSL 2
           LVK SK++EA  LV L
Sbjct: 348 LVKESKIEEATELVEL 363


>emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
          Length = 340

 Score =  197 bits (501), Expect = 1e-48
 Identities = 92/196 (46%), Positives = 139/196 (70%)
 Frame = -3

Query: 589 IVIQAFCGMGNMDNAVLLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSEMIWARMEKK 410
           I++ AFC MG++D+A+ +LDEME  G++P+L TFN LL AFY++G + + E IW  M+K 
Sbjct: 129 IIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKN 188

Query: 409 QIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETKPNTISYNALIRGYCNDGKLDEA 230
            + P++RSYNAKLRG++   ++ EAV+L++ +KT   KP+  + N+L++G+CN G L+EA
Sbjct: 189 NVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEA 248

Query: 229 KRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIEAGLVQTVVEG 50
           KR Y ++ ++EL P R TY  L+P + EKGD+  A +LC++       IE  L+Q V+EG
Sbjct: 249 KRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEPALLQQVLEG 308

Query: 49  LVKMSKVDEAKNLVSL 2
           LVK SK++EA  LV L
Sbjct: 309 LVKESKIEEATELVEL 324