BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018564
         (363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi...   201   5e-50
ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|2...   201   7e-50
ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containi...   192   3e-47
ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containi...   192   3e-47
ref|XP_003590744.1| Pentatricopeptide repeat-containing protein ...   187   8e-46

>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  201 bits (511), Expect = 5e-50
 Identities = 94/120 (78%), Positives = 104/120 (86%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQYFNCMK 181
           WNAMIAALGQHGHG +AL+LF+ MLKE+ILPDRITFLT+LS CSHAGLV EG +YF  M 
Sbjct: 496 WNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMS 555

Query: 182 QMYGINPGEDHYARFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAGCRIHGNMDLG 361
            +YGI PGEDHYAR +DLLCRAGK SEAK +IETMP EPG  +WEALLAGCRIHGNMDLG
Sbjct: 556 GLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLG 615



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQ---YFN 172
           WNAMI+    HG   EAL++F++M    I  D  T+ ++LSAC++AG    G Q   Y  
Sbjct: 259 WNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYIL 318

Query: 173 CMKQMYGINPGEDHYARFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAGCRIHGNM 352
             +    ++           L  + GK+ EA+QV   MP +   + W A+L+G    G +
Sbjct: 319 RTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAILSGYVNAGRI 377

Query: 353 D 355
           D
Sbjct: 378 D 378


>ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|222843726|gb|EEE81273.1|
           predicted protein [Populus trichocarpa]
          Length = 797

 Score =  201 bits (510), Expect = 7e-50
 Identities = 90/120 (75%), Positives = 108/120 (90%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQYFNCMK 181
           WNAMIAALGQHG G +A++LF+EMLKE ILPDRI+FLT++SACSHAGLV EG +YF+ M 
Sbjct: 494 WNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMH 553

Query: 182 QMYGINPGEDHYARFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAGCRIHGNMDLG 361
            +YG+NP E+HYAR +DLLCRAGK SEAK+V+E+MPFEPGA +WEALLAGCRIHGN+DLG
Sbjct: 554 NVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLG 613


>ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
           gi|449504088|ref|XP_004162249.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  192 bits (487), Expect = 3e-47
 Identities = 88/120 (73%), Positives = 103/120 (85%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQYFNCMK 181
           WN+MIAALGQHGHG +A++L+++MLKE ILPDR TFLT+LSACSHAGLV EG +YFN M 
Sbjct: 494 WNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSML 553

Query: 182 QMYGINPGEDHYARFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAGCRIHGNMDLG 361
           + YGI PGEDHYAR +DL CRAGK S+AK VI++MPFE  A +WEALLAGCR HGNMDLG
Sbjct: 554 ENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLG 613



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 34/116 (29%), Positives = 56/116 (48%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQYFNCMK 181
           W  MI+ L Q+G GE+ALKLF +M  +   P+   F   ++ACS  G +  G Q    + 
Sbjct: 393 WTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIV 452

Query: 182 QMYGINPGEDHYARFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAGCRIHGN 349
            + G +         + +  R G +  A+ +  TMPF    + W +++A    HG+
Sbjct: 453 HL-GHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSWNSMIAALGQHGH 506



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQYFNCMK 181
           WNAMI+    HG  E+AL LF++M    +  D  T+ +++SAC+  G       +F   K
Sbjct: 257 WNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGG-------FFLLGK 309

Query: 182 QMYG------INPGEDHYA----RFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAG 331
           Q++       +NP  D         + L  + GK+  A+++   MP +   + W  LL+G
Sbjct: 310 QVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVK-DIITWNTLLSG 368

Query: 332 CRIHGNMD 355
               G M+
Sbjct: 369 YVNAGRME 376


>ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  192 bits (487), Expect = 3e-47
 Identities = 89/120 (74%), Positives = 103/120 (85%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQYFNCMK 181
           WNAMIAAL QHGHG +A++L+++MLKE+ILPDRITFLTILSACSHAGLV EG  YF+ M+
Sbjct: 479 WNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMR 538

Query: 182 QMYGINPGEDHYARFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAGCRIHGNMDLG 361
             YGI P EDHY+R +DLLCRAG  SEAK V E+MPFEPGA +WEALLAGC IHGNM+LG
Sbjct: 539 VCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELG 598



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQYFNCMK 181
           WNAMI+     G  EEA  L + M    I  D  T+ +++SA S+AGL N G Q    + 
Sbjct: 242 WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301

Query: 182 QMYGINPGEDHYA-----RFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAGC 334
           +   + P   H+        + L  R GK+ EA++V + MP +   + W A+L+GC
Sbjct: 302 RTV-VQP-SGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNAILSGC 354



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 35/116 (30%), Positives = 58/116 (50%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQYFNCMK 181
           W  MI+ L Q+G GEE LKLF +M  E + P    +   +++CS  G ++ G Q  + + 
Sbjct: 378 WTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQII 437

Query: 182 QMYGINPGEDHYARFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAGCRIHGN 349
           Q+ G +         + +  R G +  A  V  TMP+   ++ W A++A    HG+
Sbjct: 438 QL-GHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY-VDSVSWNAMIAALAQHGH 491


>ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355479792|gb|AES60995.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  187 bits (475), Expect = 8e-46
 Identities = 85/120 (70%), Positives = 103/120 (85%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQYFNCMK 181
           WNAMIAAL QHGHG +A++LF++M+KE+ILPDRITFLTIL+AC+HAGL+ EG  YF+ M 
Sbjct: 492 WNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMC 551

Query: 182 QMYGINPGEDHYARFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAGCRIHGNMDLG 361
             YGI PGEDHYAR +DLLCRAG   +A+ VI++MPFE GA +WEALLAGCRIHGNM+LG
Sbjct: 552 TRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELG 611



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 37/116 (31%), Positives = 60/116 (51%)
 Frame = +2

Query: 2   WNAMIAALGQHGHGEEALKLFKEMLKENILPDRITFLTILSACSHAGLVNEGCQYFNCMK 181
           W  MI+ L Q+G GEE LKLF +M  E + P    F   ++ACS  G ++ G Q  + + 
Sbjct: 391 WTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVI 450

Query: 182 QMYGINPGEDHYARFVDLLCRAGKISEAKQVIETMPFEPGALVWEALLAGCRIHGN 349
           ++ G + G       + +  R G +  A+ V  TMP+   ++ W A++A    HG+
Sbjct: 451 RL-GHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-VDSVSWNAMIAALAQHGH 504