BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018429
         (592 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282612.1| PREDICTED: 50S ribosomal protein L12, chloro...   164   8e-39
ref|XP_002511394.1| 50S ribosomal protein L7/L12, putative [Rici...   161   7e-38
ref|XP_002321601.1| predicted protein [Populus trichocarpa] gi|2...   157   1e-36
gb|ABA40429.1| unknown [Solanum tuberosum]                            156   2e-36
ref|XP_004170687.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosoma...   146   3e-33

>ref|XP_002282612.1| PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis
           vinifera]
          Length = 193

 Score =  164 bits (416), Expect = 8e-39
 Identities = 98/160 (61%), Positives = 111/160 (69%), Gaps = 4/160 (2%)
 Frame = -2

Query: 468 MKLLAFLRTVHLPPNLPGKTGPLQCRLFQPDFVPRDLMVKPKRXXXXXXXXXXXXXXXPS 289
           MK  A ++TV + P LP   GPLQ R FQ DFVPR+   KPKR               PS
Sbjct: 1   MKFTALVKTVRVHPTLPKIIGPLQSRFFQHDFVPREPNAKPKRYKYPPFYDPYGPKPPPS 60

Query: 288 DKVVQLAERIAALPLEERIQIFPALRHRLLQPEIQ-FSTEGMDLDSQGGSAMAE---EEK 121
           +KVV LAERIAAL  EER+QI P L+ RL  P+ Q  STEGM+L SQGG+A      EEK
Sbjct: 61  EKVVGLAERIAALAPEERLQIGPMLKDRLSLPKTQVISTEGMELGSQGGAAAGAGKVEEK 120

Query: 120 PEKTAFDVKLEKYDAASKIKVIKEVRAFTSLGLKEAKDLV 1
            EKTAFDVKLEK++AA+KIKVIKEVRAFTSLGLKEAKDLV
Sbjct: 121 VEKTAFDVKLEKFEAAAKIKVIKEVRAFTSLGLKEAKDLV 160


>ref|XP_002511394.1| 50S ribosomal protein L7/L12, putative [Ricinus communis]
           gi|223550509|gb|EEF51996.1| 50S ribosomal protein
           L7/L12, putative [Ricinus communis]
          Length = 193

 Score =  161 bits (408), Expect = 7e-38
 Identities = 95/160 (59%), Positives = 109/160 (68%), Gaps = 4/160 (2%)
 Frame = -2

Query: 468 MKLLAFLRTVHLPPNLPGKTGPLQCRLFQPDFVPRDLMVKPKRXXXXXXXXXXXXXXXPS 289
           MK +  LR+V     L   TGPLQ R FQ DFVPRD  + P++               PS
Sbjct: 1   MKFVPLLRSVSTRYTLREITGPLQVRFFQHDFVPRDPKINPRKYKYPAFYDPYGPRPPPS 60

Query: 288 DKVVQLAERIAALPLEERIQIFPALRHRLLQPEIQ-FSTEGMDLDSQGGSAMAE---EEK 121
           DK+VQLAERIAALP EER QI P L ++L  P++Q  STEGMDL +QG  A      EEK
Sbjct: 61  DKIVQLAERIAALPPEERRQIGPTLHYKLNHPKLQTISTEGMDLGAQGSQAAVAAKVEEK 120

Query: 120 PEKTAFDVKLEKYDAASKIKVIKEVRAFTSLGLKEAKDLV 1
            EKTAFDVKLEK+DAA+KIKVIKEVRAFT+LGLKEAKDLV
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLV 160


>ref|XP_002321601.1| predicted protein [Populus trichocarpa] gi|222868597|gb|EEF05728.1|
           predicted protein [Populus trichocarpa]
          Length = 195

 Score =  157 bits (397), Expect = 1e-36
 Identities = 96/162 (59%), Positives = 111/162 (68%), Gaps = 6/162 (3%)
 Frame = -2

Query: 468 MKLLAFLRTVHLP-PNLPGKTGPLQCRLFQPDFVPRDLMVKPKRXXXXXXXXXXXXXXXP 292
           MK +A  R+V    P L   TGPLQ R FQ DFVPRD   KPK+               P
Sbjct: 1   MKFIALARSVCAHHPALREITGPLQVRYFQHDFVPRDPKTKPKKYKYPLYYDPYGPRPPP 60

Query: 291 SDKVVQLAERIAALPLEERIQIFPALRHRLLQPEIQ-FSTEGMDLDSQGGSAMAE----E 127
           S+K++++AERIAALP EER QI  AL ++L  P++Q  STEGM L SQGG A A     E
Sbjct: 61  SEKIIEIAERIAALPPEERSQIGSALGYKLKHPKLQPISTEGMGLGSQGGEAAAGAAKVE 120

Query: 126 EKPEKTAFDVKLEKYDAASKIKVIKEVRAFTSLGLKEAKDLV 1
           EK EKTAFDVKLEK+DAA+KIKVIKEVRAFT+LGLKEAKDLV
Sbjct: 121 EKKEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLV 162


>gb|ABA40429.1| unknown [Solanum tuberosum]
          Length = 194

 Score =  156 bits (395), Expect = 2e-36
 Identities = 97/161 (60%), Positives = 108/161 (67%), Gaps = 5/161 (3%)
 Frame = -2

Query: 468 MKLLAFLRTVHLPPNLPGKTGPLQCRLFQPDFVPRDLMVKPKRXXXXXXXXXXXXXXXPS 289
           MKL+A LR +     L    GPLQ R FQPDFVPRD   KP R               PS
Sbjct: 1   MKLIARLRPIQTCTALREIIGPLQSRSFQPDFVPRDPNAKPIRYKYPAAYDPYGPRPPPS 60

Query: 288 DKVVQLAERIAALPLEERIQIFPALRHRLLQPEI-QFSTEGMDLDSQGGS----AMAEEE 124
           DK+VQLAERIAAL  EER QI P LR  L  P + Q S EGMDL + GG+    A AEE+
Sbjct: 61  DKIVQLAERIAALAPEERRQIGPLLREILRHPNLKQISVEGMDLGAIGGAGGGPAKAEEK 120

Query: 123 KPEKTAFDVKLEKYDAASKIKVIKEVRAFTSLGLKEAKDLV 1
           K EKTAFDVKLEK+DAA+KIKVIKEVR+FTSLGLKEAK+LV
Sbjct: 121 KVEKTAFDVKLEKFDAAAKIKVIKEVRSFTSLGLKEAKELV 161


>ref|XP_004170687.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L12,
           chloroplastic-like [Cucumis sativus]
          Length = 193

 Score =  146 bits (368), Expect = 3e-33
 Identities = 84/160 (52%), Positives = 102/160 (63%), Gaps = 4/160 (2%)
 Frame = -2

Query: 468 MKLLAFLRTVHLPPNLPGKTGPLQCRLFQPDFVPRDLMVKPKRXXXXXXXXXXXXXXXPS 289
           MKL    +++ +        G  Q R FQPDF PRD   KPK+               PS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 288 DKVVQLAERIAALPLEERIQIFPALRHRLLQPEIQ-FSTEGMDLDSQGGSAMAE---EEK 121
           DK+++LAERI ALP  ER QI P L  +L  P++Q  S +G+D+  +GG+A      EEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLXRKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 120 PEKTAFDVKLEKYDAASKIKVIKEVRAFTSLGLKEAKDLV 1
            EKTAFDVKLEK+DAASKIKVIKEVRAFT+LGLKEAKDLV
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLV 160