BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018370
         (378 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17
ref|XP_002514579.1| pentatricopeptide repeat-containing protein,...    92   6e-17
ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp....    84   2e-14
gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thal...    80   1e-13
gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical p...    80   1e-13

>ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|222865040|gb|EEF02171.1|
           predicted protein [Populus trichocarpa]
          Length = 745

 Score = 93.6 bits (231), Expect(2) = 1e-17
 Identities = 44/74 (59%), Positives = 58/74 (78%)
 Frame = +1

Query: 1   IKAHCVKGSACKAVILFNQMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGI 180
           IKAHCVKG A +AV +F+QM + GFE+SI+DYSAVINRLCKRC I+E K     ML DG+
Sbjct: 648 IKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGV 707

Query: 181 SPDKKLYEVINQHF 222
           SPD++++E++   F
Sbjct: 708 SPDQEIFEMMLNAF 721



 Score = 21.2 bits (43), Expect(2) = 1e-17
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 215 NTFYHGRDLISVLELLG*MIKTDML 289
           N F+    + SV ELL  MIK  +L
Sbjct: 719 NAFHRAGHVHSVFELLAVMIKFGLL 743


>ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546183|gb|EEF47685.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 840

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 43/74 (58%), Positives = 51/74 (68%)
 Frame = +1

Query: 1   IKAHCVKGSACKAVILFNQMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGI 180
           IKAHC KG   KAV+ F QM + GFE+SIRDYSAVI RLCKRC + E K     ML DG+
Sbjct: 743 IKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGV 802

Query: 181 SPDKKLYEVINQHF 222
            PD+ L+EV+   F
Sbjct: 803 CPDQDLFEVLLNAF 816


>ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297338605|gb|EFH69022.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 804

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 46/80 (57%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
 Frame = +1

Query: 1   IKAHCVKGSACKAVILFNQMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGI 180
           IKAHCVKG    AVILFNQ+ D GF +SIRDYSAVINRLC+R    E K     ML  GI
Sbjct: 716 IKAHCVKGDPEMAVILFNQLLDRGFNVSIRDYSAVINRLCRRHLAIESKYFFCLMLSRGI 775

Query: 181 SPDKKLYEVI--NQHFLPWT 234
           SPD  + EV+  +   L WT
Sbjct: 776 SPDLDICEVMIKSDELLSWT 795


>gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thaliana]
          Length = 337

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 43/80 (53%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
 Frame = +1

Query: 1   IKAHCVKGSACKAVILFNQMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGI 180
           IKAHCVKG    AV LF+Q+   GF +SIRDYSAVINRLC+R  ++E K     ML  GI
Sbjct: 250 IKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGI 309

Query: 181 SPDKKLYEVI--NQHFLPWT 234
           SPD  + EV+  +   L WT
Sbjct: 310 SPDLDICEVMIKSDELLSWT 329


>gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
           from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
           contains a PPR repeat domain PF|01535 [Arabidopsis
           thaliana]
          Length = 797

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 43/80 (53%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
 Frame = +1

Query: 1   IKAHCVKGSACKAVILFNQMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGI 180
           IKAHCVKG    AV LF+Q+   GF +SIRDYSAVINRLC+R  ++E K     ML  GI
Sbjct: 710 IKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGI 769

Query: 181 SPDKKLYEVI--NQHFLPWT 234
           SPD  + EV+  +   L WT
Sbjct: 770 SPDLDICEVMIKSDELLSWT 789