BLASTX nr result
ID: Coptis25_contig00018364
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00018364
(818 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004146016.1| PREDICTED: 50S ribosomal protein L13, chloro... 298 5e-93
ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana... 284 9e-89
emb|CBI20115.3| unnamed protein product [Vitis vinifera] 285 2e-88
ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloro... 285 2e-88
ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] g... 281 7e-88
>ref|XP_004146016.1| PREDICTED: 50S ribosomal protein L13, chloroplastic-like [Cucumis
sativus] gi|449518653|ref|XP_004166351.1| PREDICTED: 50S
ribosomal protein L13, chloroplastic-like [Cucumis
sativus]
Length = 248
Score = 298 bits (763), Expect(2) = 5e-93
Identities = 154/217 (70%), Positives = 172/217 (79%), Gaps = 23/217 (10%)
Frame = +1
Query: 58 MALPCSSHST----LHSKLTFGSTSKTPF---------------LGFTLKPTTLSLT--- 171
MA+ C+S ST LHS LT G+TS F F L T++SLT
Sbjct: 1 MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
Query: 172 -QKPLQVRSQDLSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDK 348
+ LQVR+Q+L VP EQRWMF DE+ GPDIWNKTWYPKA+DH+NT+K WY+VDATDK
Sbjct: 61 KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
Query: 349 VLGRLSSTIANYIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 528
+LGRL+STIAN+IRGK+L TYTPSVDMGAFVIVVNAEK+AVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
Query: 529 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFN 639
MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFN
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFN 217
Score = 70.1 bits (170), Expect(2) = 5e-93
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 699 LGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 794
LGRALFNHLKVYKGPDHPHEAQ P+DLPIRDK
Sbjct: 211 LGRALFNHLKVYKGPDHPHEAQKPVDLPIRDK 242
>ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana]
gi|75314103|sp|Q9SYL9.1|RK13_ARATH RecName: Full=50S
ribosomal protein L13, chloroplastic; AltName:
Full=CL13; AltName: Full=Protein EMBRYO DEFECTIVE 1473;
Flags: Precursor gi|4836870|gb|AAD30573.1|AC007260_4 50S
Ribosomal protein L13 [Arabidopsis thaliana]
gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal
protein L13 [Arabidopsis thaliana]
gi|7572938|emb|CAA60775.1| ribosomal protein L13
[Arabidopsis thaliana] gi|17104781|gb|AAL34279.1|
putative ribosomal protein L13 [Arabidopsis thaliana]
gi|332198009|gb|AEE36130.1| 50S ribosomal protein L13
[Arabidopsis thaliana]
Length = 241
Score = 284 bits (727), Expect(2) = 9e-89
Identities = 145/210 (69%), Positives = 170/210 (80%), Gaps = 16/210 (7%)
Frame = +1
Query: 58 MALPCSSHSTLHSKLTF---GSTSKTPFLGFTL----KPTT----LSLTQKPLQVRSQ-- 198
MA+ CSS + + S + GS K+PFLGF+L KP+ + +++ LQV+ +
Sbjct: 1 MAVLCSSSTVILSSSSVKSSGSERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAE 60
Query: 199 ---DLSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDKVLGRLSS 369
S+VP QRWMF ++E +GPDIWN TWYPKASDH+NTDK W++VDATDK+LGRL+S
Sbjct: 61 PTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLAS 120
Query: 370 TIANYIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFD 549
TIAN+IRGKNL +YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGMTVETFD
Sbjct: 121 TIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFD 180
Query: 550 QLQQRIPERIIEHAVRGMLPKGRLGRALFN 639
QLQQRIPERI+EHAVRGMLPKGRLGRALFN
Sbjct: 181 QLQQRIPERIVEHAVRGMLPKGRLGRALFN 210
Score = 69.7 bits (169), Expect(2) = 9e-89
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 699 LGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 794
LGRALFNHLKVYKGPDHPHEAQ P+DLPIRDK
Sbjct: 204 LGRALFNHLKVYKGPDHPHEAQKPLDLPIRDK 235
>emb|CBI20115.3| unnamed protein product [Vitis vinifera]
Length = 374
Score = 285 bits (729), Expect(2) = 2e-88
Identities = 142/185 (76%), Positives = 158/185 (85%), Gaps = 4/185 (2%)
Frame = +1
Query: 97 KLTFGSTSKT-PFLGFTLKPTTL--SLTQKPLQVRSQD-LSIVPQEQRWMFADDEISGPD 264
K +FGS KT PFLGF++ S ++ +V QD ++VP +QRWMF E+SGPD
Sbjct: 159 KPSFGSLKKTTPFLGFSISAANPKPSFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPD 218
Query: 265 IWNKTWYPKASDHINTDKKWYIVDATDKVLGRLSSTIANYIRGKNLVTYTPSVDMGAFVI 444
IWNKTWYPKA+DHINT+K WYIVDATDK+LGRL+STIA YIRGKNL TYTPSVDMG+FVI
Sbjct: 219 IWNKTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVI 278
Query: 445 VVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLG 624
VVNAEKVAVSGKKRTQKLYRRHSGRPGGM VETFDQLQQRIPERI+EHAVRGMLPKGRLG
Sbjct: 279 VVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLG 338
Query: 625 RALFN 639
RALFN
Sbjct: 339 RALFN 343
Score = 67.8 bits (164), Expect(2) = 2e-88
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +3
Query: 699 LGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 794
LGRALFNHLKVYKGP HPHEAQ PIDLPIRDK
Sbjct: 337 LGRALFNHLKVYKGPHHPHEAQKPIDLPIRDK 368
>ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloroplastic [Vitis
vinifera]
Length = 235
Score = 285 bits (729), Expect(2) = 2e-88
Identities = 142/185 (76%), Positives = 158/185 (85%), Gaps = 4/185 (2%)
Frame = +1
Query: 97 KLTFGSTSKT-PFLGFTLKPTTL--SLTQKPLQVRSQD-LSIVPQEQRWMFADDEISGPD 264
K +FGS KT PFLGF++ S ++ +V QD ++VP +QRWMF E+SGPD
Sbjct: 20 KPSFGSLKKTTPFLGFSISAANPKPSFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPD 79
Query: 265 IWNKTWYPKASDHINTDKKWYIVDATDKVLGRLSSTIANYIRGKNLVTYTPSVDMGAFVI 444
IWNKTWYPKA+DHINT+K WYIVDATDK+LGRL+STIA YIRGKNL TYTPSVDMG+FVI
Sbjct: 80 IWNKTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVI 139
Query: 445 VVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLG 624
VVNAEKVAVSGKKRTQKLYRRHSGRPGGM VETFDQLQQRIPERI+EHAVRGMLPKGRLG
Sbjct: 140 VVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLG 199
Query: 625 RALFN 639
RALFN
Sbjct: 200 RALFN 204
Score = 67.8 bits (164), Expect(2) = 2e-88
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +3
Query: 699 LGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 794
LGRALFNHLKVYKGP HPHEAQ PIDLPIRDK
Sbjct: 198 LGRALFNHLKVYKGPHHPHEAQKPIDLPIRDK 229
>ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata]
gi|297333589|gb|EFH64007.1| EMB1473 [Arabidopsis lyrata
subsp. lyrata]
Length = 242
Score = 281 bits (719), Expect(2) = 7e-88
Identities = 144/211 (68%), Positives = 168/211 (79%), Gaps = 17/211 (8%)
Frame = +1
Query: 58 MALPCSSHSTL---HSKLTFGSTSKTPFLGFTL----KPTT----LSLTQKPLQVRSQ-- 198
M + CSS + + S GS K+PFLGF+L KP+ + +++ LQV+ +
Sbjct: 1 MTVLCSSSTVILPSSSVKPSGSERKSPFLGFSLTAFSKPSVRVGIYANSKRGLQVKCEAE 60
Query: 199 ----DLSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDKVLGRLS 366
S+VP QRWMF ++E +GPDIWN TWYPKASDH+NTDK W++VDATDK+LGRL+
Sbjct: 61 ETTTKTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLA 120
Query: 367 STIANYIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETF 546
STIAN+IRGKNL +YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGMTVETF
Sbjct: 121 STIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETF 180
Query: 547 DQLQQRIPERIIEHAVRGMLPKGRLGRALFN 639
DQLQQRIPERI+EHAVRGMLPKGRLGRALFN
Sbjct: 181 DQLQQRIPERIVEHAVRGMLPKGRLGRALFN 211
Score = 69.7 bits (169), Expect(2) = 7e-88
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 699 LGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 794
LGRALFNHLKVYKGPDHPHEAQ P+DLPIRDK
Sbjct: 205 LGRALFNHLKVYKGPDHPHEAQKPLDLPIRDK 236