BLASTX nr result
ID: Coptis25_contig00018353
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00018353
(1560 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 545 e-152
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera] 540 e-151
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 528 e-147
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 509 e-142
ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D sub... 495 e-137
>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Vitis vinifera]
Length = 1560
Score = 545 bits (1405), Expect = e-152
Identities = 294/556 (52%), Positives = 383/556 (68%), Gaps = 48/556 (8%)
Frame = -1
Query: 1560 IDPTMIVKLAPRLESLFLGCLPVTSNCSRVMEF----SNGKKLVFDERTKAYKRLIDFKG 1393
IDP I + R++S FL CLPVT N RV E SNG+ L+FD+ ++AYK+L+DF+G
Sbjct: 246 IDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRG 305
Query: 1392 QASELALRVRDFLSVSKLYTEKSSNTDV---LSGLKWVKDVVLAKRTDNSFRMVVVGDPN 1222
A+EL+ RV D L SKL +EKS++ D +SGLKW+K+V+L KRT++SFRM+VVGDP
Sbjct: 306 TANELSCRVLDCLKTSKLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPK 365
Query: 1221 VKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLSILERGQFRARRKDDTIVLRNEDD 1042
++L EIG+P I ++L+ E LN NWEK+ + C L +LE+GQ RRK +R +D
Sbjct: 366 LRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMND 425
Query: 1041 LKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRVLPMDSVVLLNPICCSPFRGDFDG 862
+ GDI+YR L +GD++L+NRPPSIHQHS+IALSV+VLP++SVV +NP+CCSPFRGDFDG
Sbjct: 426 FQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDG 485
Query: 861 DCFHGYIPQSIKSRVELQELVCIDRQLVNGQNGRNLISLCHDSLSAAHLLREKGEFLNKV 682
DC HGYIPQS+ SRVEL ELV ++RQL+N Q+GRNL+SL DSLSAAHL+ E G LN
Sbjct: 486 DCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLF 545
Query: 681 EMQQLGMLCSRQLPYPAIVRA-TDHNPIWTGNQLLSMLLPVSFDY-SSLSGVHISNGEII 508
+MQQL M C QL PAI++A +WTG QL SMLLP F+Y L+GV IS+GE+I
Sbjct: 546 QMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELI 605
Query: 507 -SAPGSSWLQDTDGNLFISLVKLYGSKAVDIIFTIQEVLLEWISMRGFSVSLSDLFVSCD 331
S+ GS+WL+D DGNLF SLVK KA+D ++ QEVL EW+SMRG SVSLSD+++S D
Sbjct: 606 SSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSD 665
Query: 330 SYTWDKMTEEVRSGLQEAKK-------------------GLKN----------------- 259
S + M +EV GL A++ G N
Sbjct: 666 SISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQG 725
Query: 258 --VLSKQSVCDFKGVFRDLQSLIYRYSSKDNSMLAMVKAGSKGSLPKLAQQCLTLGLQYS 85
L + SVC FK FRD+Q+L+Y+Y++KDNS+LAM+KAGSKG+L KL QQ L LGLQ+S
Sbjct: 726 SAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHS 785
Query: 84 NVPLSFSIPWDSSLSS 37
VPLSF IP S ++
Sbjct: 786 LVPLSFKIPHQLSCAA 801
>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
Length = 1393
Score = 540 bits (1391), Expect = e-151
Identities = 294/559 (52%), Positives = 383/559 (68%), Gaps = 51/559 (9%)
Frame = -1
Query: 1560 IDPTMIVKLAPRLESLFLGCLPVTSNCSRVMEF----SNGKKLVFDERTKAYKRLIDFKG 1393
IDP I + R++S FL CLPVT N RV E SNG+ L+FD+ ++AYK+L+DF+G
Sbjct: 213 IDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRG 272
Query: 1392 QASELALRVRDFLSVSK---LYTEKSSNTDV---LSGLKWVKDVVLAKRTDNSFRMVVVG 1231
A+EL+ RV D L SK L +EKS++ D +SGLKW+K+V+L KRT++SFRM+VVG
Sbjct: 273 TANELSCRVLDCLKTSKASNLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVG 332
Query: 1230 DPNVKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLSILERGQFRARRKDDTIVLRN 1051
DP ++L EIG+P I ++L+ E LN NWEK+ + C L +LE+GQ RRK +R
Sbjct: 333 DPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRR 392
Query: 1050 EDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRVLPMDSVVLLNPICCSPFRGD 871
+D + GDI+YR L +GD++L+NRPPSIHQHS+IALSV+VLP++SVV +NP+CCSPFRGD
Sbjct: 393 MNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGD 452
Query: 870 FDGDCFHGYIPQSIKSRVELQELVCIDRQLVNGQNGRNLISLCHDSLSAAHLLREKGEFL 691
FDGDC HGYIPQS+ SRVEL ELV ++RQL+N Q+GRNL+SL DSLSAAHL+ E G L
Sbjct: 453 FDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLL 512
Query: 690 NKVEMQQLGMLCSRQLPYPAIVRA-TDHNPIWTGNQLLSMLLPVSFDY-SSLSGVHISNG 517
N +MQQL M C QL PAI++A +WTG QL SMLLP F+Y L+GV IS+G
Sbjct: 513 NLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDG 572
Query: 516 EII-SAPGSSWLQDTDGNLFISLVKLYGSKAVDIIFTIQEVLLEWISMRGFSVSLSDLFV 340
E+I S+ GS+WL+D DGNLF SLVK KA+D ++ QEVL EW+SMRG SVSLSD+++
Sbjct: 573 ELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYL 632
Query: 339 SCDSYTWDKMTEEVRSGLQEAKK-------------------GLKN-------------- 259
S DS + M +EV GL A++ G N
Sbjct: 633 SSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYE 692
Query: 258 -----VLSKQSVCDFKGVFRDLQSLIYRYSSKDNSMLAMVKAGSKGSLPKLAQQCLTLGL 94
L + SVC FK FRD+Q+L+Y+Y++KDNS+LAM+KAGSKG+L KL QQ L LGL
Sbjct: 693 RQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGL 752
Query: 93 QYSNVPLSFSIPWDSSLSS 37
Q+S VPLSF IP S ++
Sbjct: 753 QHSLVPLSFKIPHQLSCAA 771
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 528 bits (1360), Expect = e-147
Identities = 282/559 (50%), Positives = 368/559 (65%), Gaps = 58/559 (10%)
Frame = -1
Query: 1560 IDPTMIVKLAPRLESLFLGCLPVTSNCSRVME----FSNGKKLVFDERTKAYKRLIDFKG 1393
IDP I K + +S+FL C VT NC RV E FSNG++LVFD+RT+AYK+++DF+G
Sbjct: 208 IDPNFIRKFVLKRDSIFLNCFSVTPNCHRVTEVTHAFSNGQRLVFDDRTRAYKKMVDFRG 267
Query: 1392 QASELALRVRDFLSVSKLYTEKSSNTDVL--------------SGLKWVKDVVLAKRTDN 1255
A EL+ RV D L SK+ +KS N D SGL+W+KDVVL KR DN
Sbjct: 268 IAKELSFRVLDCLKTSKINPDKSVNNDDYMALQRKMNDSSSSSSGLRWIKDVVLGKRNDN 327
Query: 1254 SFRMVVVGDPNVKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLSILERGQFRARRK 1075
SFRMVVVGDPN+K EIG+P I ++L E L NW+KL+ CC + +LE+G RR+
Sbjct: 328 SFRMVVVGDPNIKFSEIGIPCPIAERLQISEHLTTWNWDKLNTCCEVRLLEKGDMHVRRE 387
Query: 1074 DDTIVLRNEDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRVLPMDSVVLLNPI 895
+ +R +L+IGDI+YR L++GD +L+NRPPSIHQHSLIALSV+VLP SV+ +NP+
Sbjct: 388 GKLVRVRRTKELRIGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPATSVLAINPL 447
Query: 894 CCSPFRGDFDGDCFHGYIPQSIKSRVELQELVCIDRQLVNGQNGRNLISLCHDSLSAAHL 715
C+PFRGDFDGDC HGY+PQS+ +RVEL+ELV +D+QL+N QNGRNL+S DSL AAHL
Sbjct: 448 ICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQLINVQNGRNLLSFSQDSLVAAHL 507
Query: 714 LREKGEFLNKVEMQQLGMLCSRQLPYPAIVRATDHNP-IWTGNQLLSMLLPVSFDYS-SL 541
+ E G L+ +MQQL M C QL PA+ +A N WTG QL+SMLLP FD+
Sbjct: 508 VMEDGVLLSLQQMQQLQMFCPHQLFSPAVRKAPSLNGCAWTGKQLISMLLPRGFDHECPS 567
Query: 540 SGVHISNGEIISAPGSSWLQDTDGNLFISLVKLYGSKAVDIIFTIQEVLLEWISMRGFSV 361
S V+I +GE+IS+ GS WL+DTDGNLF SL+K + +D ++ QEVL EW+SMRG SV
Sbjct: 568 SDVYIRDGELISSEGSFWLRDTDGNLFQSLIKQCQDQVLDFLYIAQEVLCEWLSMRGLSV 627
Query: 360 SLSDLFVSCDSYTWDKMTEEVRSGLQEAK------------------------------- 274
SLSDL++ DS + + M +EV GLQ+AK
Sbjct: 628 SLSDLYLCPDSDSRENMMDEVLFGLQDAKGTCNMKQFMVDSCRDFLASIDEDEQYSVNFD 687
Query: 273 -------KGLKNVLSKQSVCDFKGVFRDLQSLIYRYSSKDNSMLAMVKAGSKGSLPKLAQ 115
K LS+ SV FK VFRD+Q+L Y+Y+SKDN+++AM K+GSKG+L K+ Q
Sbjct: 688 VEHLCHEKQRSAALSQASVDAFKHVFRDIQTLGYKYASKDNALMAMFKSGSKGNLLKVVQ 747
Query: 114 QCLTLGLQYSNVPLSFSIP 58
+ LGLQ+S VPLSF +P
Sbjct: 748 HSMCLGLQHSLVPLSFRMP 766
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 509 bits (1312), Expect = e-142
Identities = 278/560 (49%), Positives = 372/560 (66%), Gaps = 59/560 (10%)
Frame = -1
Query: 1560 IDPTMIVKLAPRLESLFLGCLPVTSNCSRVME----FSNGKKLVFDERTKAYKRLIDFKG 1393
IDP + K P ++SLFL PVT N RV E FSNG++L+FDERT+AYK+++DF+G
Sbjct: 213 IDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRG 272
Query: 1392 QASELALRVRDFLSVSKL--------------YTEKSSNTDVLS-GLKWVKDVVLAKRTD 1258
A+EL RV D L +SK Y +K +T S GL+W+KDVVL KR+D
Sbjct: 273 TANELGSRVLDCLKISKAIYNIFVFCLNHVNYYQKKIKDTATSSSGLRWIKDVVLGKRSD 332
Query: 1257 NSFRMVVVGDPNVKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLSILERGQFRARR 1078
+ FRMVVVGDPN++L EIG+P + ++L E L+ N +KL C L ++E+G+ RR
Sbjct: 333 HCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRR 392
Query: 1077 KDDTIVLRNEDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRVLPMDSVVLLNP 898
+ + +RN +L +GD +YR L +GD++L+NRPPSIHQHSLIALSV++LP+ +V+ LNP
Sbjct: 393 EGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNP 452
Query: 897 ICCSPFRGDFDGDCFHGYIPQSIKSRVELQELVCIDRQLVNGQNGRNLISLCHDSLSAAH 718
+CCSPFRGDFDGDC HGY+PQS+++RVE++ELV +D+QL NGQ+GRNL+SL HDSL+AAH
Sbjct: 453 LCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQSGRNLLSLSHDSLTAAH 512
Query: 717 LLREKGEFLNKVEMQQLGMLCSRQLPYPAIVRA-TDHNPIWTGNQLLSMLLPVSFDYSSL 541
L+ E G LN +MQQL ML QL PAIV++ N WTG QL S+LLP FDYSS
Sbjct: 513 LILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFDYSSP 572
Query: 540 S-GVHISNGEIISAPGSSWLQDTDGNLFISLVKLYGSKAVDIIFTIQEVLLEWISMRGFS 364
S V I GE+IS+ GS WL+D+ NLF +L++ K +D + Q VL EW+S RG S
Sbjct: 573 SHNVFIEKGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLS 632
Query: 363 VSLSDLFVSCDSYTWDKMTEEVRSGLQEAKK--GLKNV---------------------- 256
VSLSDL++S DSY+ + M +++ GLQEA++ LK +
Sbjct: 633 VSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCNLKQLMVDSHKEILIGNDEDNQHLLSI 692
Query: 255 --------------LSKQSVCDFKGVFRDLQSLIYRYSSKDNSMLAMVKAGSKGSLPKLA 118
L++ SV FK VFRD+Q+L+Y+YS KDNS+L M KAGSKG+L KL
Sbjct: 693 AVERLIYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLV 752
Query: 117 QQCLTLGLQYSNVPLSFSIP 58
Q + LGLQ+S V LSFS+P
Sbjct: 753 QHSMCLGLQHSLVTLSFSLP 772
>ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
Length = 1622
Score = 495 bits (1274), Expect = e-137
Identities = 275/562 (48%), Positives = 366/562 (65%), Gaps = 61/562 (10%)
Frame = -1
Query: 1560 IDPTMIVKLAPRLESLFLGCLPVTSNCSRVME----FSNGKKLVFDERTKAYKRLIDFKG 1393
+DP I K PR L L C PVT NC RV E S+G +L FD+RT++ K+L+DF+G
Sbjct: 198 VDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRG 257
Query: 1392 QASELALRVRDFLSVSKLYTEKSSNT---DVL-----------SGLKWVKDVVLAKRTDN 1255
A+EL+ RV D L +SKL +K+ N+ D+ SGL+W+KDVVL KR D+
Sbjct: 258 TANELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENAFNSSGLRWIKDVVLGKRNDS 317
Query: 1254 SFRMVVVGDPNVKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLSILERGQFRARRK 1075
SFR VVVGDP+++L EIG+P I + L E +N QN EKL CC L +LE+G+ RK
Sbjct: 318 SFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVCRK 377
Query: 1074 DDTIVLRNEDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRVLPMDSVVLLNPI 895
+ L ++DL+IGD YR L +GD +L+NRPPSIHQHS+I+L+VRVLP+ SVV +NP+
Sbjct: 378 GSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPL 437
Query: 894 CCSPFRGDFDGDCFHGYIPQSIKSRVELQELVCIDRQLVNGQNGRNLISLCHDSLSAAHL 715
CCSP RGDFDGDC HGYIPQS+ +R+EL ELV +DRQL+NGQ+GRNL+SL DSL+AA+L
Sbjct: 438 CCSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYL 497
Query: 714 LREKGEFLNKVEMQQLGML--CSRQLPYPAIVRATDHN-PIWTGNQLLSMLLPVSFDYSS 544
L E G LN +MQQL ML +++L PA+V+A N +W G QL SMLLP FDYS
Sbjct: 498 LMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDYSF 557
Query: 543 LS-GVHISNGEII-SAPGSSWLQDTDGNLFISLVKLYGSKAVDIIFTIQEVLLEWISMRG 370
S GV +S+GE++ S+ S WL+D+D N+F SLV+ Y K ++ ++ Q+VL EW+SM G
Sbjct: 558 PSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYAAQKVLCEWLSMTG 617
Query: 369 FSVSLSDLFVSCDSYTWDKMTEEVRSGLQEAKKG-------------------------- 268
FSVSLSDL++S DSY + M EE+ GLQ+A++
Sbjct: 618 FSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESENAI 677
Query: 267 ------------LKNVLSKQSVCDFKGVFRDLQSLIYRYSSKDNSMLAMVKAGSKGSLPK 124
+ LS+ SV F+ VFR++QSL +Y+ K NS LAM KAGSKG+L K
Sbjct: 678 TVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNLLK 737
Query: 123 LAQQCLTLGLQYSNVPLSFSIP 58
L Q + LG+Q S V LS+ +P
Sbjct: 738 LVQHSMCLGMQNSLVRLSYRLP 759