BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018280
         (1694 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   738   0.0  
ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|2...   702   0.0  
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   692   0.0  
ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chlor...   691   0.0  
ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chlor...   676   0.0  

>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  738 bits (1906), Expect = 0.0
 Identities = 351/476 (73%), Positives = 409/476 (85%)
 Frame = +1

Query: 106  GVVSFTSIFTNTFISSLCTSNCKTLSLPITLLRTLATSHFITKKNKNLGKFSWGSSNRTF 285
            G    TSIFT+  +SSL  SNC++   P+ L RTLA+S+  ++++K +    W S+N T 
Sbjct: 2    GTAILTSIFTSGLVSSLWNSNCRSFGTPVALARTLASSNVFSRRHKRV---VWCSNNPTC 58

Query: 286  TSHASSKAEIGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLD 465
            T   ++ ++   + ++S+ +GYPEY RLLPCP +NGPPR+EHLVVSEGG VLD+I K+LD
Sbjct: 59   TRELTASSD---SANTSSVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALD 115

Query: 466  LPPLFVADLIHFGAVYYALVCPKPPLSATPEQIRLFKEVTSPSVLKKRLSVKGKTVREAQ 645
            LPPLFVADLIHFGAVYYALVCP+PP SATPEQ+RLFKEVT+PSVL+KR S+KGKT+REAQ
Sbjct: 116  LPPLFVADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQ 175

Query: 646  KTFRITHVHEFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGT 825
            KTFRIT V+EFVEAGTY+RVHVHPKRFPR YEIDWKSRIIAV ESYVVLDKPAGTSVGGT
Sbjct: 176  KTFRITDVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGT 235

Query: 826  TDNIEESCATFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKL 1005
            TDNIEESCATFATRALGL  PL+TTHQIDNCT GCVVLARTKEYCSVFHGKIREK+VKKL
Sbjct: 236  TDNIEESCATFATRALGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKL 295

Query: 1006 YRALAAAPVPLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKY 1185
            YRALAAAP+P+G +THYMRPVNIAPRL+S+DF +GW LCQL+VLECKEVPWP+  I+EKY
Sbjct: 296  YRALAAAPMPIGIVTHYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKY 355

Query: 1186 CVDDCGWPSKDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNP 1365
            C++D GWP K+ A++CKINLLTGRTHQIRAQ AA GAPIVGDSMYMPA IAE +SPGLNP
Sbjct: 356  CIEDRGWPLKNSAFKCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNP 415

Query: 1366 FGEHGKLYPTEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWW 1533
            FG++ K Y TE D+  AV EW+A+HGKEP VAIGLQA QISWD+GEHFY+ G PWW
Sbjct: 416  FGKYKKKYTTENDRETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471


>ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|222847890|gb|EEE85437.1|
            predicted protein [Populus trichocarpa]
          Length = 470

 Score =  702 bits (1813), Expect = 0.0
 Identities = 334/464 (71%), Positives = 391/464 (84%)
 Frame = +1

Query: 145  ISSLCTSNCKTLSLPITLLRTLATSHFITKKNKNLGKFSWGSSNRTFTSHASSKAEIGVT 324
            ++S+ + + ++ S P+TLLRTLA +   +   K L    W S ++   S  S K +I  T
Sbjct: 6    LASIFSYSYRSFSAPVTLLRTLAFTRAYSLNKKAL---VWCSLSKKKLSCESLKQDIACT 62

Query: 325  ISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLFVADLIHFG 504
             ++S+ +GYPEY RLLPCP  N PPRIEHLVVSE GPVLD+ICK+LDLPPLFVADLIHFG
Sbjct: 63   TATSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADLIHFG 122

Query: 505  AVYYALVCPKPPLSATPEQIRLFKEVTSPSVLKKRLSVKGKTVREAQKTFRITHVHEFVE 684
            AV+YALVCP+PP +ATPEQIR+F+EVT+PSVLKKR S+KGKTVREAQKTFRITHV +F+E
Sbjct: 123  AVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLE 182

Query: 685  AGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFAT 864
            AG Y+RVHVHPKRFPR Y+IDWKSRII V ES+VVLDKPAGTSVGGTTDNIEESCATFAT
Sbjct: 183  AGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFAT 242

Query: 865  RALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALAAAPVPLGT 1044
            RALGL  PL+TTHQIDNCT GCVVLART+E CSVFHGKIREK VKKLY ALAA+PVP+G 
Sbjct: 243  RALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGV 302

Query: 1045 ITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDCGWPSKDVA 1224
            + HYMRP+N+APRLVS++F +GW+LCQL+V+ECK VPWP+  ++EKYCV DCGWPSKD A
Sbjct: 303  VNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKDHA 362

Query: 1225 YECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHGKLYPTEED 1404
            YECKINLLTGRTHQIRAQ AA GAP+VGDSMYMPA +AE  SPG NPFG++ K Y +E+D
Sbjct: 363  YECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTSEDD 422

Query: 1405 KANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 1536
            KA AVEEW+  HGKEP+VAIGLQA QISWD+G+H Y  G PWWR
Sbjct: 423  KAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466


>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 476

 Score =  692 bits (1786), Expect = 0.0
 Identities = 333/468 (71%), Positives = 390/468 (83%), Gaps = 4/468 (0%)
 Frame = +1

Query: 145  ISSLCTSNCKTLSLPITLLRTLATSH---FITKKNKN-LGKFSWGSSNRTFTSHASSKAE 312
            ++S+     ++   P+T+LRTLA++H   F     KN L +FS  S  R F    SSK E
Sbjct: 6    LASIFAGGYRSFVTPVTVLRTLASTHAYSFHRHHPKNALARFSLNSHERKFCCE-SSKPE 64

Query: 313  IGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLFVADL 492
            +  T ++S  +G  +Y RLLPCP  N PPRIEHLVV E GPVLD+ICK+LDLPPLFVADL
Sbjct: 65   VAYTTNTSCVNGNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPPLFVADL 124

Query: 493  IHFGAVYYALVCPKPPLSATPEQIRLFKEVTSPSVLKKRLSVKGKTVREAQKTFRITHVH 672
            I FGAV+YALVCP+PP +ATPEQIRLF++ T+PSVLKKR S+KGKTVREAQKTFRITHV 
Sbjct: 125  IDFGAVHYALVCPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTFRITHVD 184

Query: 673  EFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCA 852
            +++EAGTY+RVHVHPKRFPR Y+IDWKSRIIAV + YVVLDKPAGTSVGGT DNIEESCA
Sbjct: 185  QYLEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEESCA 244

Query: 853  TFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALAAAPV 1032
            TFATRALGL  PLKTTHQIDNCT GCVVLAR+KEYCSVFHGKIREK+VKKLY ALAA+PV
Sbjct: 245  TFATRALGLTTPLKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAASPV 304

Query: 1033 PLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDCGWPS 1212
            P+G I +YMRPVNIAPRL+S++F  GW+LCQL+VLEC++VPWP+  I+EKY V+DCGWPS
Sbjct: 305  PVGVIKNYMRPVNIAPRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCGWPS 364

Query: 1213 KDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHGKLYP 1392
            KD AYECKINLLTGRTHQIRAQ AA GAP+VGDSMYMPA +AE ++PGLNPFG+H K Y 
Sbjct: 365  KDFAYECKINLLTGRTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRKQYT 424

Query: 1393 TEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 1536
             E D++ AV EW+A+HGKEP VAIGLQA +ISWDEG+H Y+ G PWWR
Sbjct: 425  NESDESMAVAEWVAQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472


>ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  691 bits (1783), Expect = 0.0
 Identities = 329/475 (69%), Positives = 390/475 (82%), Gaps = 9/475 (1%)
 Frame = +1

Query: 139  TFISSLCTSNCKTLSLP-----ITLLRTLATSHFITKKNKNLGKFSWGSSNRTFTSHAS- 300
            T  S L    C+ L++P     I + R   +SH     NK+   +   SS+ + T+ A  
Sbjct: 2    TVASMLFAGGCRILAVPAAARAIRIPRAALSSHH----NKHAPSWGCRSSHNSNTALAGE 57

Query: 301  ---SKAEIGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLP 471
               S  + G   ++S+ D +P+Y RLLPCP    PPRIEHLV+SEGGPVL+ ICK+LDLP
Sbjct: 58   AEFSTTDAGNLTATSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLP 117

Query: 472  PLFVADLIHFGAVYYALVCPKPPLSATPEQIRLFKEVTSPSVLKKRLSVKGKTVREAQKT 651
            PL+V+DLI FGAVYYALVCP+PP +AT EQIR+FKEVT PSVL+KR S+KGKTVREAQKT
Sbjct: 118  PLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKT 177

Query: 652  FRITHVHEFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTD 831
            FR+THV +FVE GTY+RVHVHPKRFPRSYEIDW+SRIIAVAESYVVLDKPAGTSVGGTTD
Sbjct: 178  FRVTHVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTD 237

Query: 832  NIEESCATFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYR 1011
            NIEESCATFATRALG+  PL TTHQIDNCT GCVVLARTK+YCS+FHGKIREK+VKKLY 
Sbjct: 238  NIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYL 297

Query: 1012 ALAAAPVPLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCV 1191
            ALAA+P+P G ITHYMRP+N+APRL+S+DF +GW+LCQL+VLEC+++PWP   IQ+KYCV
Sbjct: 298  ALAASPLPTGIITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCV 357

Query: 1192 DDCGWPSKDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFG 1371
            +DCGWPS+D AYECKINLLTG+THQIRAQFAAY AP++GDSMYMPA IA+ S+PGLNPFG
Sbjct: 358  EDCGWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFG 417

Query: 1372 EHGKLYPTEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 1536
            ++ K + +E +K  AV  WMA+HGKEPSVAIGLQA QISWD+ EHFYE G PWWR
Sbjct: 418  KYKKDFSSESEKETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWR 472


>ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  676 bits (1743), Expect = 0.0
 Identities = 323/472 (68%), Positives = 383/472 (81%), Gaps = 6/472 (1%)
 Frame = +1

Query: 139  TFISSLCTSNCKTLSLPITLLRTLATSHFITKKNKNLGKFSW--GSSNRTFTSHASSK-- 306
            T  S L + +C++L++P    R +  S      N+N    SW   SS+ + T+ A     
Sbjct: 2    TVASMLFSGSCRSLAMPAAA-RAVRISRAALVNNRNKHPPSWCCRSSHNSNTALAGEAEF 60

Query: 307  --AEIGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLF 480
               + G+  ++S+ D + +Y RLLPCP    PPRIEHLVVSEGGPVL+ ICK+LDLPPL+
Sbjct: 61   LTTDAGILNATSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLPPLY 120

Query: 481  VADLIHFGAVYYALVCPKPPLSATPEQIRLFKEVTSPSVLKKRLSVKGKTVREAQKTFRI 660
            V+DLI FGAVYYALVCP+PP +AT EQIR+FKEVT PSVL+KR S+KGKTVREAQKTFR+
Sbjct: 121  VSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRV 180

Query: 661  THVHEFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIE 840
            THV +FVE GTY+RVHVHPKR PR YEIDW+SRII VAESYVVLDKPAGTSVGGTTDNIE
Sbjct: 181  THVDQFVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIE 240

Query: 841  ESCATFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALA 1020
            ESCATFATRALG+  PL TTHQIDNCT GCVVLARTKEYCSVFHGKIREK+VKK Y ALA
Sbjct: 241  ESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALA 300

Query: 1021 AAPVPLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDC 1200
            A P+P G ITHYMRP+++APRL+S+DF +GW+LCQL+VLEC++VPWP   IQ+KYC++DC
Sbjct: 301  AFPLPTGIITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDC 360

Query: 1201 GWPSKDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHG 1380
            GWPS+D AYECKINLLTG+THQIRAQFAAY AP++GDSMYMPA IA  S+PGLNPFG++ 
Sbjct: 361  GWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYK 420

Query: 1381 KLYPTEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 1536
            K + +E +K  AV  W+A+HGKEPSVAIGLQA QISWD+ EHFYE   PWWR
Sbjct: 421  KDFSSESEKETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWR 472