BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018278
         (1812 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267728.1| PREDICTED: uncharacterized protein LOC100256...   626   e-177
gb|AEI98626.1| hypothetical protein 111O18.13 [Coffea canephora]      586   e-165
ref|XP_002521582.1| RNA polymerase II transcription factor, puta...   585   e-164
ref|XP_003537577.1| PREDICTED: uncharacterized protein LOC100815...   584   e-164
ref|NP_195383.1| transcription initiation factor TFIIB [Arabidop...   566   e-159

>ref|XP_002267728.1| PREDICTED: uncharacterized protein LOC100256546 [Vitis vinifera]
          Length = 540

 Score =  626 bits (1615), Expect = e-177
 Identities = 345/556 (62%), Positives = 390/556 (70%), Gaps = 18/556 (3%)
 Frame = -3

Query: 1753 IKCPYCSSTQGRCSSTQSNQSITECTSCGRVIEERQTQPNELFLLRAQDTPLCVVTSDLA 1574
            ++CPYC++ QGRC +T S + +TECTSCGRV+EERQ+Q + LF LRAQDTPLC+VTSDL 
Sbjct: 1    MRCPYCTAAQGRCGTTGSGRLVTECTSCGRVMEERQSQIHHLFHLRAQDTPLCLVTSDLP 60

Query: 1573 XXXXXXXXXPNPQTDSDSEDPFESTGFISTFSTWSLEPTPLIARTSFSYSGMLAELER-- 1400
                        Q D    DPFESTGFIS FSTWSL+P P+ AR+  S+SG LAELER  
Sbjct: 61   PPPPQQAQTAQEQED----DPFESTGFISAFSTWSLDPCPIFARSCLSFSGHLAELERVL 116

Query: 1399 ----------------CCSITDTSATGGVVAVDNLRAYLQIIDVSSILGLDYDISDHAFE 1268
                              S +  +++G  V VDNLRAYLQIIDV+SILGLDYDI+DHAFE
Sbjct: 117  ESSSSSSSSSSSSAAAAASSSSLASSGPAVVVDNLRAYLQIIDVASILGLDYDIADHAFE 176

Query: 1267 LFRDCSTATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGE 1088
            LFRDCS+ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN+PQKEIGKYIKILGE
Sbjct: 177  LFRDCSSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGE 236

Query: 1087 ALQLSQPINSNSIAVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAI 908
            ALQLSQPINSNSI+VHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAI
Sbjct: 237  ALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAI 296

Query: 907  YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPANYTPAVPPEKAFPTTA 728
            YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP+NYTPAVPPEKAFPTTA
Sbjct: 297  YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTA 356

Query: 727  ITSARSLAPRVDASEVAISSDKDKQPEVEKDKKIILPEVDNLVKGKMESEVKSTTRVPHS 548
            ITS RS APRVD  E+    D+DKQPE +  K     E  +  +GK ++E K   +  H+
Sbjct: 357  ITSGRSSAPRVDLIEIVSCLDRDKQPESKPSKPNETLETSHQARGKEDTECKGNCQGAHT 416

Query: 547  PPAPIGAGNIDQQVLNRAKTFWDPQHPFKVPGFQHSMAEKDQTKGRGIDINETQFNLSDF 368
                +G        LNR  TFW   +PF   GF+ S  EK+Q    G+D+NE   N  + 
Sbjct: 417  ----LG--------LNRPTTFWQLPNPFGGSGFRTS-GEKNQIVSGGMDLNEGGANPQEL 463

Query: 367  ETKADKEPMDIDSLQRPPQFSGPSPSNASSHLWSFHTQLSSNSSSVKFLEPSQRSRFQGV 188
            E K D          R  QF G  PS+ SS  W F    SS SSS      S     Q +
Sbjct: 464  EQKLDNGAKAATVSVRAEQFPGAPPSSGSSITWPFRQPPSSGSSS------SYAQLMQSL 517

Query: 187  KGVGNQNSSEGTGHGG 140
            K        +G+G  G
Sbjct: 518  KVASGFPELKGSGRKG 533


>gb|AEI98626.1| hypothetical protein 111O18.13 [Coffea canephora]
          Length = 526

 Score =  586 bits (1510), Expect = e-165
 Identities = 321/517 (62%), Positives = 373/517 (72%), Gaps = 10/517 (1%)
 Frame = -3

Query: 1753 IKCPYCSSTQGRCSSTQSNQSITECTSCGRVIEERQTQPNELFLLRAQDTPLCVVTSDLA 1574
            ++CPYCS+ QGRC++T S +SITECTSCGRV+EERQ+Q + LF +RAQD+PLC+VTSDL 
Sbjct: 1    MRCPYCSAAQGRCTTTSSGRSITECTSCGRVVEERQSQSHHLFHIRAQDSPLCLVTSDLP 60

Query: 1573 XXXXXXXXXPNPQTDSDSEDPFESTGFISTFSTWSLEPTPLIARTSFSYSGMLAELER-- 1400
                      NP ++SD +DPFE TGFI+ FSTWSLEP PL A++S S++G LAELER  
Sbjct: 61   TLPVPATTDSNPTSNSDDDDPFEPTGFITAFSTWSLEPYPLFAQSSISFAGHLAELERVL 120

Query: 1399 --------CCSITDTSATGGVVAVDNLRAYLQIIDVSSILGLDYDISDHAFELFRDCSTA 1244
                    C S + ++++G  V VDNLRAYLQIIDV+SILGLDYDISDHAF+LFRDCS+A
Sbjct: 121  ETTSSSSSCSSSSGSNSSGPSVVVDNLRAYLQIIDVASILGLDYDISDHAFQLFRDCSSA 180

Query: 1243 TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPI 1064
            TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPI
Sbjct: 181  TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPI 240

Query: 1063 NSNSIAVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLED 884
            NSNSI+VHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLED
Sbjct: 241  NSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLED 300

Query: 883  KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPANYTPAVPPEKAFPTTAITSARSLA 704
            KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP+NY+P VPPEKAFP   I S RS  
Sbjct: 301  KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYSPVVPPEKAFPMATIASGRSST 360

Query: 703  PRVDASEVAISSDKDKQPEVEKDKKIILPEVDNLVKGKMESEVKSTTRVPHSPPAPIGAG 524
            PR D  EV  S   DKQ E +  +   + +  ++ K K E+E + +     S P      
Sbjct: 361  PRADLVEVPSS---DKQTESKNPRTSDVLDTCHVAKNKEETENRDSIHRSQSLP------ 411

Query: 523  NIDQQVLNRAKTFWDPQHPFKVPGFQHSMAEKDQTKGRGIDINETQFNLSDFETKADKEP 344
                  ++R    W  Q P +     ++ A+K     + +DI+      SD +  A    
Sbjct: 412  ------MHRTPILWKSQPPVR-SATVNTPADKIHNITQEMDIDPRSQTGSDEKVVA---- 460

Query: 343  MDIDSLQRPPQFSGPSPSNASSHLWSFHTQLSSNSSS 233
                S  RP  FS P+ S+A S  W   T  S  S S
Sbjct: 461  ----SSMRPVLFSAPT-SSAGSLSWPLQTTSSGFSPS 492


>ref|XP_002521582.1| RNA polymerase II transcription factor, putative [Ricinus communis]
            gi|223539260|gb|EEF40853.1| RNA polymerase II
            transcription factor, putative [Ricinus communis]
          Length = 511

 Score =  585 bits (1507), Expect = e-164
 Identities = 325/543 (59%), Positives = 374/543 (68%), Gaps = 7/543 (1%)
 Frame = -3

Query: 1753 IKCPYCSSTQGRCSSTQSNQSITECTSCGRVIEERQTQPNELFLLRAQDTPLCVVTSDLA 1574
            +KCPYC + Q RC+++ S +SI ECTSCGRV+EERQ Q   +F  RAQD PL +VTSDL 
Sbjct: 1    MKCPYCPAAQARCATSTSGRSILECTSCGRVVEERQFQQYHVFHNRAQDNPLSLVTSDLP 60

Query: 1573 XXXXXXXXXPNPQTDSDSEDPFESTGFISTFSTWSLEPTPLIARTSFSYSGMLAELERCC 1394
                       PQ + D EDPFE TGFI+ FSTWSLEP PL  R+S S+SG LAELER  
Sbjct: 61   II--------QPQGEGDDEDPFEPTGFITVFSTWSLEPNPLSLRSSLSFSGHLAELERTL 112

Query: 1393 SITDTSATGG--VVAVDNLRAYLQIIDVSSILGLDYDISDHAFELFRDCSTATCLRNRSV 1220
             +T +++      V VDNLRAY+QIIDV+SILGLD DISDHAF+LFRDC +ATCLRNRSV
Sbjct: 113  ELTASASNSNSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSV 172

Query: 1219 EALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPINSNSIAVH 1040
            EALATAALVQAIREAQEPRTLQEISIAAN+PQKEIGKYIKILGEALQLSQPINSNSI+VH
Sbjct: 173  EALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVH 232

Query: 1039 MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 860
            MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI
Sbjct: 233  MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 292

Query: 859  CKVTGLTEVTLRKVYKELLENWDDLLPANYTPAVPPEKAFPTTAITSARSLAPRVDASEV 680
            CKVTGLTEVTLRKVYKELLENWDDLLP+NYTPAVPPEKAFPTT ITS RS APRVD  EV
Sbjct: 293  CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTVITSGRSSAPRVDPVEV 352

Query: 679  AISS-DKDKQPEVEKDKKIILPEVDNLVKGKMESEVKSTTRVPHSPPAPIGAGNIDQQVL 503
                 DKDKQP+ + +K       + L + K + E    +R    P              
Sbjct: 353  TSPPVDKDKQPDNKSNK-----TNNVLARAKEDIESNGNSRGSRGPA------------- 394

Query: 502  NRAKTFWDPQHPFKVPGFQHSMAEKDQTKGRGIDINETQFNLSDFETKADKE--PMDIDS 329
                  W     F+ P  Q   +    +  + ++ NE Q +  +FE K DK+    ++  
Sbjct: 395  ------W---QNFRQPWLQFGASGVTTSGEKNLNGNELQGSCQEFEEKVDKQIIEKELTG 445

Query: 328  LQRPPQFSGPSPSNAS--SHLWSFHTQLSSNSSSVKFLEPSQRSRFQGVKGVGNQNSSEG 155
              RP QFS P  S  S  S  W F +  +S  S +    P     +  +KG+  QN S  
Sbjct: 446  ASRPNQFSNPPASGMSTISITWPFRSAPASGPSPIVQPPPKLAPGYAELKGISIQNGSSN 505

Query: 154  TGH 146
              +
Sbjct: 506  NAN 508


>ref|XP_003537577.1| PREDICTED: uncharacterized protein LOC100815371 [Glycine max]
          Length = 488

 Score =  584 bits (1505), Expect = e-164
 Identities = 319/519 (61%), Positives = 370/519 (71%), Gaps = 10/519 (1%)
 Frame = -3

Query: 1753 IKCPYCSSTQGRCSSTQSNQSITECTSCGRVIEERQTQPNELFLLRAQDTPLCVVTSDLA 1574
            +KCPYCS+ QGRC++T   +SITECTSCGRV+EERQ+ P+ +F +RAQD PLC+VTSDLA
Sbjct: 1    MKCPYCSAAQGRCATTSGGRSITECTSCGRVVEERQSHPHHVFHVRAQDNPLCLVTSDLA 60

Query: 1573 XXXXXXXXXPNPQTDSDSEDPFESTGFISTFSTWSLEPTPLIARTSFSYSGMLAELERCC 1394
                          ++D EDPFE TGFI+ FSTW+LEP PL  ++S S+SG LAELER  
Sbjct: 61   LPAL--------NQNNDEEDPFEPTGFITAFSTWALEPNPLYLQSSLSFSGYLAELERTL 112

Query: 1393 --------SITDTSATGGVVAVDNLRAYLQIIDVSSILGLDYDISDHAFELFRDCSTATC 1238
                    S T +S++   V VDNLRAY+QIIDV+SILGLD DISDHAF+LFRDC +ATC
Sbjct: 113  ESSSSSSSSFTSSSSSSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATC 172

Query: 1237 LRNRSVEALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPINS 1058
            LRNRSVEALATAALVQAIREAQEPRTLQEISIAAN+PQKEIGKYIKILGEALQLSQPINS
Sbjct: 173  LRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINS 232

Query: 1057 NSIAVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKR 878
            NSI+VHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKR
Sbjct: 233  NSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKR 292

Query: 877  KTQAEICKVTGLTEVTLRKVYKELLENWDDLLPANYTPAVPPEKAFPTTAITSARSLAPR 698
            KTQAEICKVTGLTEVTLRKVYKELLENWDDLLP+NYTPAVPPE+AFPTT I S RS   +
Sbjct: 293  KTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSSTAK 352

Query: 697  VDASEVAISSDKDKQPEVEKDKKIILPEVDNLVKGKMESEVKSTTRVPHSPPAPIGAGNI 518
            VDA EV  S D +K P+++  K    P + +  +GK E+               +G  + 
Sbjct: 353  VDAVEVISSLDPEKLPDIKHSKPNEGPGMVHHPRGKDEA---------------VGGYHA 397

Query: 517  DQQVLNRAKTFWDPQHPFKVPGFQHSMAEKDQTKGRGIDINETQFNLSDFETKADKEPMD 338
                LN+  TFW  Q P        S     Q   +G+DI+ +Q N    E  A+     
Sbjct: 398  SHSTLNQQSTFWQSQLP--------SGTHNHQNVLQGMDIDVSQRNHQQPEHMAEDTTNG 449

Query: 337  I--DSLQRPPQFSGPSPSNASSHLWSFHTQLSSNSSSVK 227
                S  +  Q   P  S+ASS +  F    SS  S+V+
Sbjct: 450  AANGSSLKSNQLCSPPASSASSVMRQFSAPPSSGPSNVR 488


>ref|NP_195383.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
            gi|2464915|emb|CAB16810.1| transcription initiation
            factor like protein [Arabidopsis thaliana]
            gi|7270613|emb|CAB80331.1| transcription initiation
            factor like protein [Arabidopsis thaliana]
            gi|16509378|emb|CAC82714.1| TFIIB-related protein
            [Arabidopsis thaliana] gi|30102720|gb|AAP21278.1|
            At4g37010 [Arabidopsis thaliana]
            gi|39545884|gb|AAR28005.1| TFIIB5/pBrp [Arabidopsis
            thaliana] gi|332661282|gb|AEE86682.1| transcription
            initiation factor TFIIB [Arabidopsis thaliana]
          Length = 503

 Score =  567 bits (1460), Expect = e-159
 Identities = 316/540 (58%), Positives = 369/540 (68%), Gaps = 5/540 (0%)
 Frame = -3

Query: 1753 IKCPYCSSTQGRCSSTQSNQSITECTSCGRVIEERQTQPNELFLLRAQDTPLCVVTSDLA 1574
            +KCPYCSS QGRC++T S +SITEC+SCGRV+EERQTQ + LF LRAQDTPLC+VTSDL 
Sbjct: 1    MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60

Query: 1573 XXXXXXXXXPNPQTDSDSEDPFESTGFISTFSTWSLEPTPLIARTSFSYSGMLAELERCC 1394
                         +  D EDPFE TGFI+ FSTWSLEP+P+ AR+S S+SG LAELER  
Sbjct: 61   TAAQP--------SPEDEEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTL 112

Query: 1393 SITDTSATGG--VVAVDNLRAYLQIIDVSSILGLDYDISDHAFELFRDCSTATCLRNRSV 1220
             +  +++      V VDNLRAY+QIIDV+SILGLD DIS+HAF+LFRDC +ATCLRNRSV
Sbjct: 113  ELASSTSNSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSV 172

Query: 1219 EALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPINSNSIAVH 1040
            EALATA LVQAIREAQEPRTLQEISIAAN+ QKEIGKYIKILGEALQLSQPINSNSI+VH
Sbjct: 173  EALATACLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVH 232

Query: 1039 MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 860
            MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI
Sbjct: 233  MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 292

Query: 859  CKVTGLTEVTLRKVYKELLENWDDLLPANYTPAVPPEKAFPTTAITSARSLAPRVDASEV 680
            CK+TGLTEVTLRKVYKELLENWDDLLP+NYTPAVPPEKAFPTT I++ RS  PR      
Sbjct: 293  CKITGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISTTRSTTPR------ 346

Query: 679  AISSDKDKQPEVEKDKKIILPEVDNLVKGKMESEVKSTTRVPHSPPAPIGAGNIDQQVLN 500
              + D  +   VEKDK    P ++       + + K   +     P   G  +    V+N
Sbjct: 347  --AVDPPEPSFVEKDKPSAKP-IETFDHTYQQPKGKEDKQPKFRQPWLFGTAS----VMN 399

Query: 499  RAKTFWDPQHPFKVPGFQHSMAEKDQTKGRGIDINETQFNLSDFETKADKEPMDIDSLQR 320
             A+   +P  P                    +D  + Q +    +   DKE + I     
Sbjct: 400  PAEMISEPAKP------------------NAMDYEKQQLDKQQQQQLGDKETLPIYLRDH 441

Query: 319  PPQFSGPSPSNASSHL-WSFHTQLSSNSSS--VKFLEPSQRSRFQGVKGVGNQNSSEGTG 149
             P  S PSPS   S + WSF   +   SSS       P     +  ++G G++N+    G
Sbjct: 442  NPFPSNPSPSTGISTINWSFRPSVVPGSSSNLPVIHPPKLPPGYAEIRGSGSRNADNPHG 501