BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018273
         (640 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282478.1| PREDICTED: protein DCL, chloroplastic [Vitis...    85   3e-22
ref|XP_004141259.1| PREDICTED: protein DCL, chloroplastic-like [...    80   1e-17
ref|XP_002510210.1| DCL protein, chloroplast precursor, putative...    79   1e-17
ref|NP_001031151.1| uncharacterized protein [Arabidopsis thalian...    73   1e-14
ref|NP_683398.1| uncharacterized protein [Arabidopsis thaliana] ...    73   1e-14

>ref|XP_002282478.1| PREDICTED: protein DCL, chloroplastic [Vitis vinifera]
           gi|147773590|emb|CAN69898.1| hypothetical protein
           VITISV_032063 [Vitis vinifera]
          Length = 205

 Score = 84.7 bits (208), Expect(2) = 3e-22
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = -3

Query: 125 DWVDWEDQILEDTVPLVGFVRMLLHSGKYGSGDRLSPEHEK 3
           +WVDWEDQILEDTVPLVGFVRM+LHSGKY SG+RLSPEHEK
Sbjct: 82  EWVDWEDQILEDTVPLVGFVRMILHSGKYRSGERLSPEHEK 122



 Score = 46.2 bits (108), Expect(2) = 3e-22
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
 Frame = -2

Query: 417 SISTNSPPLIFRT--TNPISLTHFTPSLIYFKP--TTHFRALKTGSDGDKVVKQDPFGPD 250
           S++ +SPPL      TNPISL H +  +++F    T    ALKT SDG     Q+ +GPD
Sbjct: 3   SVARSSPPLQIHHLHTNPISL-HPSHPILHFATHRTPSVPALKTASDGS----QEVYGPD 57

Query: 249 LLKKPVISALD 217
           LL+KP +SA D
Sbjct: 58  LLRKPHVSAPD 68


>ref|XP_004141259.1| PREDICTED: protein DCL, chloroplastic-like [Cucumis sativus]
           gi|449519344|ref|XP_004166695.1| PREDICTED: protein DCL,
           chloroplastic-like [Cucumis sativus]
          Length = 225

 Score = 80.1 bits (196), Expect(2) = 1e-17
 Identities = 34/41 (82%), Positives = 39/41 (95%)
 Frame = -3

Query: 125 DWVDWEDQILEDTVPLVGFVRMLLHSGKYGSGDRLSPEHEK 3
           +WVDWED+ILEDTVPLVGFVRM+LH+GKY +GDRL PEHEK
Sbjct: 100 EWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEK 140



 Score = 35.4 bits (80), Expect(2) = 1e-17
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = -2

Query: 387 FRTTNPISLTHFTPSLIYFKPTTHFRALKTGSDGDKVVKQDPFGPDLLKKPV 232
           F  ++P+ L   T  +  F P+T  RALKTG +G ++     +  DLL+KPV
Sbjct: 22  FFNSSPLILCFPTHPINSFHPST--RALKTGPEGIRLRSHQEYSSDLLRKPV 71


>ref|XP_002510210.1| DCL protein, chloroplast precursor, putative [Ricinus communis]
           gi|223550911|gb|EEF52397.1| DCL protein, chloroplast
           precursor, putative [Ricinus communis]
          Length = 214

 Score = 79.0 bits (193), Expect(2) = 1e-17
 Identities = 35/39 (89%), Positives = 38/39 (97%)
 Frame = -3

Query: 119 VDWEDQILEDTVPLVGFVRMLLHSGKYGSGDRLSPEHEK 3
           VDWEDQILEDTVPLVGFVRM+LHSGKY +GDRLSPEHE+
Sbjct: 94  VDWEDQILEDTVPLVGFVRMILHSGKYENGDRLSPEHER 132



 Score = 36.2 bits (82), Expect(2) = 1e-17
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
 Frame = -2

Query: 417 SISTNSPPLIFRTTNPISLTHFTPSLIYF---KPTTHFR----ALKTGSDGDKVVKQDPF 259
           S+S   P L    +NPISL +F+P ++ F   + TT F     ALKTGSDG         
Sbjct: 5   SLSKPPPCLHGHYSNPISL-YFSPVILSFPFHRTTTSFNSRIFALKTGSDGS-------- 55

Query: 258 GPDLLKKPVI 229
             DLL+KP++
Sbjct: 56  --DLLRKPIV 63


>ref|NP_001031151.1| uncharacterized protein [Arabidopsis thaliana]
           gi|332193993|gb|AEE32114.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 219

 Score = 72.8 bits (177), Expect(2) = 1e-14
 Identities = 32/41 (78%), Positives = 38/41 (92%)
 Frame = -3

Query: 125 DWVDWEDQILEDTVPLVGFVRMLLHSGKYGSGDRLSPEHEK 3
           ++VDWED+ILE TVPLVGFVRM+LHSGKY + DRLSPEHE+
Sbjct: 96  EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHER 136



 Score = 32.3 bits (72), Expect(2) = 1e-14
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
 Frame = -2

Query: 423 IISISTNSPPL--IFRTTNPISLTHFTPSLIYFKP------TTHFRALKTGSDGDKVVKQ 268
           + SI ++SP     FR    I     +P  +YF            RAL+T SDG K+   
Sbjct: 3   LASIPSSSPVASPYFRCRTYIFSFSSSPLCLYFPRGDSTSLRPRVRALRTESDGAKIGNS 62

Query: 267 DPFGPDLLKKPVISA 223
           + +G +LL++P I++
Sbjct: 63  ESYGSELLRRPRIAS 77


>ref|NP_683398.1| uncharacterized protein [Arabidopsis thaliana]
           gi|12321014|gb|AAG50632.1|AC083835_17 defective
           chloroplasts and leaves (DCL) protein, putative
           [Arabidopsis thaliana] gi|22135799|gb|AAM91086.1|
           At1g45261/F2G19.1 [Arabidopsis thaliana]
           gi|48310651|gb|AAT41860.1| At1g45261 [Arabidopsis
           thaliana] gi|62318604|dbj|BAD95026.1| defective
           chloroplasts and leaves (DCL) protein [Arabidopsis
           thaliana] gi|332193992|gb|AEE32113.1| uncharacterized
           protein [Arabidopsis thaliana]
          Length = 219

 Score = 72.8 bits (177), Expect(2) = 1e-14
 Identities = 32/41 (78%), Positives = 38/41 (92%)
 Frame = -3

Query: 125 DWVDWEDQILEDTVPLVGFVRMLLHSGKYGSGDRLSPEHEK 3
           ++VDWED+ILE TVPLVGFVRM+LHSGKY + DRLSPEHE+
Sbjct: 96  EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHER 136



 Score = 32.3 bits (72), Expect(2) = 1e-14
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
 Frame = -2

Query: 423 IISISTNSPPL--IFRTTNPISLTHFTPSLIYFKP------TTHFRALKTGSDGDKVVKQ 268
           + SI ++SP     FR    I     +P  +YF            RAL+T SDG K+   
Sbjct: 3   LASIPSSSPVASPYFRCRTYIFSFSSSPLCLYFPRGDSTSLRPRVRALRTESDGAKIGNS 62

Query: 267 DPFGPDLLKKPVISA 223
           + +G +LL++P I++
Sbjct: 63  ESYGSELLRRPRIAS 77