BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018265
         (477 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    53   4e-10
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    53   9e-09
ref|XP_002317261.1| predicted protein [Populus trichocarpa] gi|2...    48   3e-07
ref|XP_003612650.1| F-box family protein [Medicago truncatula] g...    49   2e-06
ref|XP_002532277.1| conserved hypothetical protein [Ricinus comm...    48   3e-06

>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
           gi|222861279|gb|EEE98821.1| f-box family protein
           [Populus trichocarpa]
          Length = 422

 Score = 52.8 bits (125), Expect(2) = 4e-10
 Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +2

Query: 80  PEFEKSLEVIGSFNGLLCLSEDQYRCSYPVFYYICNPITGEHIRLLRAGELFHVE-VSTF 256
           PEFE    V+GS NGLLCLS+  Y  S     YI NP TG +  L ++ +    E VS F
Sbjct: 120 PEFE----VVGSCNGLLCLSDSLYNDS----LYIYNPFTGCYKELPKSLQYPDQEVVSGF 171

Query: 257 GVDSTTNEYKVIRFHYDRD 313
           G +  T EYKVIR  Y R+
Sbjct: 172 GFNPKTKEYKVIRIVYYRN 190



 Score = 36.2 bits (82), Expect(2) = 4e-10
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 328 EVFTLGSSKWRRINSGVPYETLRHPYGILANNHLHWIS 441
           ++ TLG  +WR +   V Y  +R   G L N  LHWIS
Sbjct: 209 QILTLGCPEWRSLGK-VSYRLVRRASGALVNGRLHWIS 245


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score = 52.8 bits (125), Expect(2) = 9e-09
 Identities = 36/79 (45%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +2

Query: 80  PEFEKSLEVIGSFNGLLCLSEDQYRCSYPVFYYICNPITGEHIRLLRAGELFHVE-VSTF 256
           PEFE    V+GS NGLLCLS+  +  S     YI NP TG +  L ++ +    E V  F
Sbjct: 119 PEFE----VVGSCNGLLCLSDSLFNDS----LYIYNPFTGRYKELPKSLQYPDQEVVFGF 170

Query: 257 GVDSTTNEYKVIRFHYDRD 313
           G +  TNEYKVIR  Y R+
Sbjct: 171 GFNPKTNEYKVIRIVYYRN 189



 Score = 31.6 bits (70), Expect(2) = 9e-09
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 328 EVFTLGSSKWRRINSGVPYETLRHPYGILANNHLHWIS 441
           ++ TLG   WR +   V Y  +R     L N  LHW+S
Sbjct: 208 QILTLGCPGWRSLGK-VSYRLVRRASETLVNGRLHWVS 244


>ref|XP_002317261.1| predicted protein [Populus trichocarpa] gi|222860326|gb|EEE97873.1|
           predicted protein [Populus trichocarpa]
          Length = 410

 Score = 47.8 bits (112), Expect(2) = 3e-07
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
 Frame = +2

Query: 98  LEVIGSFNGLLCLSEDQYRCSYPVFYYICNPITGEHIRL-------LRAGELFHVEVSTF 256
           +E++GS NGLLCL +   +      +Y+CNP+TGEH+R         + G+     V  F
Sbjct: 125 VELVGSCNGLLCLFDKNSK----KVFYLCNPVTGEHVRTPANCKKEKQRGKTILDAVLGF 180

Query: 257 GVDSTTNEYKVIR 295
           G    +N Y V+R
Sbjct: 181 GFSPKSNHYMVLR 193



 Score = 31.6 bits (70), Expect(2) = 3e-07
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 325 GEVFTLGSSKWRRINSGVPYETLRHPYGILANNHLHWI 438
           GE+   G ++W+ I   +P+   +  +G+  N  LHWI
Sbjct: 210 GEICIFGDNEWKSIGE-IPFPDCKKFFGVSLNGALHWI 246


>ref|XP_003612650.1| F-box family protein [Medicago truncatula]
           gi|355513985|gb|AES95608.1| F-box family protein
           [Medicago truncatula]
          Length = 441

 Score = 48.9 bits (115), Expect(2) = 2e-06
 Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
 Frame = +2

Query: 77  EPEFEKSLEVIGSFNGLLCLSEDQYRCSYPVFYYICNPITGEHIRLLRAGELFHVE---V 247
           +PE +K   V+ S NGLLCLSE  Y  ++ V   +CNPI GE IRL  A  + +      
Sbjct: 133 KPEDDK-FSVVNSCNGLLCLSE-PYTVNHLV---VCNPIIGEFIRLPEAIGIANTRKPIC 187

Query: 248 STFGVDSTTNEYKVIR 295
           +  G    TNEYKVIR
Sbjct: 188 AALGFQPKTNEYKVIR 203



 Score = 27.3 bits (59), Expect(2) = 2e-06
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 328 EVFTLGSSKWRRINSGVPYETLRHPYGILANNHLHWIS 441
           E+ TLG++ WR +     +   R       N  LHWI+
Sbjct: 221 EMHTLGTATWRNVEVDPMFSFTRLGSPTCVNGALHWIN 258


>ref|XP_002532277.1| conserved hypothetical protein [Ricinus communis]
           gi|223528011|gb|EEF30092.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 410

 Score = 48.1 bits (113), Expect(2) = 3e-06
 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
 Frame = +2

Query: 104 VIGSFNGLLCLSED-QYRCSYPVFYYICNPITGEHIRLLRAGELF--HVEVSTFGVDSTT 274
           VIGS NGLL L +  Q R +Y     I NP T +++ L   G++   H   + FG  STT
Sbjct: 119 VIGSCNGLLYLLDSLQQRANY-----IYNPFTSDYLELPEPGQVLNQHRVATGFGFHSTT 173

Query: 275 NEYKVIRFHYDRDEGE 322
            EYKV+R  Y R+  E
Sbjct: 174 KEYKVVRVVYYRNNKE 189



 Score = 27.7 bits (60), Expect(2) = 3e-06
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 343 GSSKWRRINSGVPYETLRHPYGILANNHLHWIS 441
           GS  WR       Y+ L +P  ++ N  LHW+S
Sbjct: 214 GSLTWRS-KGETSYQLLGNPSHVVVNGRLHWLS 245