BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018243
         (1268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   362   9e-98
ref|XP_002313876.1| predicted protein [Populus trichocarpa] gi|2...   335   1e-89
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   330   5e-88
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   305   2e-80
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   303   8e-80

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score =  362 bits (930), Expect = 9e-98
 Identities = 180/244 (73%), Positives = 201/244 (82%), Gaps = 2/244 (0%)
 Frame = +2

Query: 2   VHRLDRDSSGILVLGRTQTSAAILHSVFREKTFGASVDDSDNTKRILQRSYWALVMGSPR 181
           VHRLDRDSSGIL++GRTQTSA ILHS+FREKTFGAS +D D  KRILQR YWALV+GSPR
Sbjct: 233 VHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPR 292

Query: 182 RSSGLISAPLGKVVLDNGKAERITIVDDTQNQSCQHAVTEYRVIESSHHGYTWLELCPLT 361
           R  GLISAPLGKVV+D+GK+ERITIVD+ Q  S QHA+TEYRVI+SS HGYTWLEL PLT
Sbjct: 293 RPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLT 352

Query: 362 GRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPMPGSYLEKT--ERLPKLKMVPFGLDL 535
           GRKHQLRVHCAEVLGTPIVGDYKYGWQAHR WK +  S +EK   E L   K  PFGLDL
Sbjct: 353 GRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRKTHPFGLDL 412

Query: 536 ESGSILEKRPHLHLHCKRMVLPDVSLALQHMQISTDHXXXXXXXXXXVAPLPLHMQRSWD 715
           ESGSIL+K+PHLHLHCK+MVLP+VSLALQ++Q+S +           VAPLP HMQRSWD
Sbjct: 413 ESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQRSWD 472

Query: 716 ALRS 727
            L S
Sbjct: 473 ILNS 476


>ref|XP_002313876.1| predicted protein [Populus trichocarpa] gi|222850284|gb|EEE87831.1|
           predicted protein [Populus trichocarpa]
          Length = 324

 Score =  335 bits (860), Expect = 1e-89
 Identities = 166/242 (68%), Positives = 194/242 (80%), Gaps = 2/242 (0%)
 Frame = +2

Query: 2   VHRLDRDSSGILVLGRTQTSAAILHSVFREKTFGASVDDSDNTKRILQRSYWALVMGSPR 181
           VHRLDRD SGILV+GRTQTSA +LH++FREKT  AS DD  N +RILQR YWALV+GSPR
Sbjct: 84  VHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPR 143

Query: 182 RSSGLISAPLGKVVLDNGKAERITIVDDTQNQSCQHAVTEYRVIESSHHGYTWLELCPLT 361
           R  GLISAPLGKVV+DNGK++RIT+V+++QN S QHAVT+YRVIESS HG+TWLEL PLT
Sbjct: 144 RPKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESS-HGFTWLELSPLT 202

Query: 362 GRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPMPGSYLEKTERLPKL--KMVPFGLDL 535
           GRKHQLRVHCAEVLGTPIVGDYKY WQAHRNWK +  S +E       L  K++PF LDL
Sbjct: 203 GRKHQLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDL 262

Query: 536 ESGSILEKRPHLHLHCKRMVLPDVSLALQHMQISTDHXXXXXXXXXXVAPLPLHMQRSWD 715
           +SGSI EK P LHLHCK+MVLPDVS ALQ +Q+S+D+           APLP +M++SWD
Sbjct: 263 DSGSISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWD 322

Query: 716 AL 721
            L
Sbjct: 323 IL 324


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  330 bits (846), Expect = 5e-88
 Identities = 164/244 (67%), Positives = 192/244 (78%), Gaps = 2/244 (0%)
 Frame = +2

Query: 2    VHRLDRDSSGILVLGRTQTSAAILHSVFREKTFGASVDDSDNTKRILQRSYWALVMGSPR 181
            VHRLDRDSSGILV+GRTQTS  +LHSVFREKTF AS  D    +RILQR YWALV+GSPR
Sbjct: 294  VHRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPR 353

Query: 182  RSSGLISAPLGKVVLDNGKAERITIVDDTQNQSCQHAVTEYRVIESSHHGYTWLELCPLT 361
            R  G+ISAPLGKVV+D+GK++RIT+V++ ++ S QHAVT+YRV+ESS HGY WLEL P+T
Sbjct: 354  RQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMESS-HGYAWLELSPIT 412

Query: 362  GRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPMPGSYLEKTERLPKL--KMVPFGLDL 535
            GRKHQLRVHCAEVLGTPIVGDYKYGWQ HR WK +P   LEK      L  K++PFG+DL
Sbjct: 413  GRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQLPFPNLEKISNENALCKKILPFGIDL 472

Query: 536  ESGSILEKRPHLHLHCKRMVLPDVSLALQHMQISTDHXXXXXXXXXXVAPLPLHMQRSWD 715
            ESGSI EK P LHLHCK+MVLPDVS AL+ +Q S+++           APLP +MQRSWD
Sbjct: 473  ESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQRSWD 532

Query: 716  ALRS 727
             L S
Sbjct: 533  ILNS 536


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 466

 Score =  305 bits (780), Expect = 2e-80
 Identities = 150/244 (61%), Positives = 185/244 (75%), Gaps = 2/244 (0%)
 Frame = +2

Query: 2   VHRLDRDSSGILVLGRTQTSAAILHSVFREKTFGAS--VDDSDNTKRILQRSYWALVMGS 175
           VHRLDRDSSGIL++GRT TS ++LHSVFREKTF AS   +  D+ K+IL + YWALV+GS
Sbjct: 229 VHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGS 288

Query: 176 PRRSSGLISAPLGKVVLDNGKAERITIVDDTQNQSCQHAVTEYRVIESSHHGYTWLELCP 355
           PRRS GLI+APLGK+VLD+G++E+I ++D+ +    Q A+T+Y+VI+S HHGYTWLELCP
Sbjct: 289 PRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVIKS-HHGYTWLELCP 347

Query: 356 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPMPGSYLEKTERLPKLKMVPFGLDL 535
           LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+NWKP   ++    +   K + +PFGLD 
Sbjct: 348 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNF---HKNQGKKQFLPFGLDF 404

Query: 536 ESGSILEKRPHLHLHCKRMVLPDVSLALQHMQISTDHXXXXXXXXXXVAPLPLHMQRSWD 715
           ESGSI E  P LHLHCK++ LPDVS AL +   S D            APLP +MQ+SWD
Sbjct: 405 ESGSIAENNPRLHLHCKQLTLPDVSFALHN--DSLDRDCSRLECLELDAPLPSYMQKSWD 462

Query: 716 ALRS 727
            + S
Sbjct: 463 IINS 466


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  303 bits (775), Expect = 8e-80
 Identities = 149/242 (61%), Positives = 184/242 (76%), Gaps = 2/242 (0%)
 Frame = +2

Query: 2   VHRLDRDSSGILVLGRTQTSAAILHSVFREKTFGAS--VDDSDNTKRILQRSYWALVMGS 175
           VHRLDRDSSGIL++GRT TS ++LHSVFREKTF AS   +  D+ K+IL + YWALV+GS
Sbjct: 234 VHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGS 293

Query: 176 PRRSSGLISAPLGKVVLDNGKAERITIVDDTQNQSCQHAVTEYRVIESSHHGYTWLELCP 355
           PRRS GLI+APLGK+VLD+G++E+I ++D+ +    Q A+T+Y+VI+S HHGYTWLELCP
Sbjct: 294 PRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVIKS-HHGYTWLELCP 352

Query: 356 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPMPGSYLEKTERLPKLKMVPFGLDL 535
           LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+NWKP   ++    +   K + +PFGLD 
Sbjct: 353 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNF---HKNQGKKQFLPFGLDF 409

Query: 536 ESGSILEKRPHLHLHCKRMVLPDVSLALQHMQISTDHXXXXXXXXXXVAPLPLHMQRSWD 715
           ESGSI E  P LHLHCK++ LPDVS AL +   S D            APLP +MQ+SWD
Sbjct: 410 ESGSIAENSPRLHLHCKQLTLPDVSFALHN--DSLDRDCSRLECLELDAPLPSYMQKSWD 467

Query: 716 AL 721
            +
Sbjct: 468 II 469