BLASTX nr result

ID: Coptis25_contig00018202 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018202
         (745 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277684.1| PREDICTED: uncharacterized protein LOC100257...    61   3e-07
ref|XP_003529839.1| PREDICTED: uncharacterized protein LOC100808...    58   2e-06
ref|XP_002331180.1| predicted protein [Populus trichocarpa] gi|2...    56   7e-06

>ref|XP_002277684.1| PREDICTED: uncharacterized protein LOC100257848 [Vitis vinifera]
          Length = 266

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 29/55 (52%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = -2

Query: 309 LLRTLLHKKIYPQKSS-TILVKKYLGDRHSSKNNKDDQ*EEKRDTGCKWVNTDSK 148
           +LR LLHKKIYPQ SS T+ + +YL +RH  K++ +D+  EK   G KWV TDS+
Sbjct: 206 ILRLLLHKKIYPQSSSSTLSIMRYLANRHMPKSDNEDEVNEKVTEGSKWVKTDSE 260


>ref|XP_003529839.1| PREDICTED: uncharacterized protein LOC100808146 [Glycine max]
          Length = 263

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = -2

Query: 309 LLRTLLHKKIYPQKSS-TILVKKYLGDRHSSKNNKDDQ*EEKRDTGCKWVNTDSK 148
           LLRT+LHKKIY Q SS + LVKK + D+  ++   +D+ +E+   GCKWV TDS+
Sbjct: 203 LLRTMLHKKIYTQNSSRSPLVKKGIEDKKMTRKRNEDESDERNGDGCKWVKTDSE 257


>ref|XP_002331180.1| predicted protein [Populus trichocarpa] gi|222873301|gb|EEF10432.1|
           predicted protein [Populus trichocarpa]
          Length = 312

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 46/109 (42%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
 Frame = -2

Query: 309 LLRTLLHKKIYPQKSST-ILVKKYLGDRHSSKNNK-DDQ*EEKRDTGCKWVNTDSKSKVF 136
           LLRTLLHKKI PQ +S    +KKY+ D+  SK  K DD+ + K   G KWV TDS+ K F
Sbjct: 209 LLRTLLHKKINPQSTSRPSSMKKYIEDKKISKKEKEDDEKQYKTSDGSKWVKTDSECK-F 267

Query: 135 LLHLL-----IAYIMISVEMLLT*REKIYTFKFK*HCFRFVSADIVLEI 4
           +  LL       YI I + + +  ++ I           F+ ADIVLEI
Sbjct: 268 IFSLLGCPNIYIYIYIYIYIYIYNQDPIDILT---RSCSFI-ADIVLEI 312


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