BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018179
         (1529 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332188.1| predicted protein [Populus trichocarpa] gi|2...   587   e-165
ref|XP_003546633.1| PREDICTED: DNA repair protein recA homolog 1...   581   e-163
ref|XP_002271727.1| PREDICTED: DNA repair protein recA homolog 1...   579   e-163
emb|CBI21810.3| unnamed protein product [Vitis vinifera]              578   e-162
ref|XP_003562018.1| PREDICTED: DNA repair protein recA homolog 1...   577   e-162

>ref|XP_002332188.1| predicted protein [Populus trichocarpa] gi|222875295|gb|EEF12426.1|
            predicted protein [Populus trichocarpa]
          Length = 387

 Score =  587 bits (1512), Expect = e-165
 Identities = 300/376 (79%), Positives = 327/376 (86%), Gaps = 5/376 (1%)
 Frame = -1

Query: 1430 PLQFPVTRLSFSSDRQTSKTQHASKTRSEF----NGS-LSDDFDSRFTDRQKALEAAMND 1266
            PL F  +R+ F +    +  +   + R EF    NGS LS D D+RF D+QKALEAAMND
Sbjct: 6    PLYFQFSRVCFKTSHFAAVKKKPKEIRCEFDSKVNGSPLSSDLDARFLDKQKALEAAMND 65

Query: 1265 INNSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEVYGPESSGKTTLAL 1086
            INNSFGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRIVE++GPESSGKTTLAL
Sbjct: 66   INNSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIFGPESSGKTTLAL 125

Query: 1085 HAIAEVQRLGGNAMLVDAEHAFDPAYSKDLGVDIENLIVCQPDNGEMALETADRMCRSGA 906
            HAIAEVQ+ GG+AMLVDAEHAFDPAYSK LGVD+ENLIVCQPDNGEMALE ADRMCRSGA
Sbjct: 126  HAIAEVQKFGGHAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGA 185

Query: 905  VDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRY 726
            VDLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKMSGNASKAGCTL+FLNQIRY
Sbjct: 186  VDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 245

Query: 725  KIGVFYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDIGLXXXXXXXXXXXXRPY 546
            KIGV+YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDED+G+            RPY
Sbjct: 246  KIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY 305

Query: 545  KQAEFDIVFGQGVSQLGCILDCAETMDLIVKKGSWYSYEEHRLGQGRDKALQHLRENPLL 366
            KQAEF+I+FG+GVSQLGCILDCAE MD++VKKGSWYSY +HRLGQGRDKALQ+LR+NP L
Sbjct: 306  KQAEFEIIFGEGVSQLGCILDCAEMMDVVVKKGSWYSYGDHRLGQGRDKALQYLRDNPHL 365

Query: 365  CSEIEKVVRSKIADAT 318
              EIEK VRS + D T
Sbjct: 366  QEEIEKKVRSTMTDGT 381


>ref|XP_003546633.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like
            [Glycine max]
          Length = 414

 Score =  581 bits (1498), Expect = e-163
 Identities = 300/394 (76%), Positives = 330/394 (83%), Gaps = 3/394 (0%)
 Frame = -1

Query: 1478 LKPHCFFFYLKTSAKQPLQFPVTRLSFSSDRQTSKTQHAS---KTRSEFNGSLSDDFDSR 1308
            LKPHC    LK      L FP   L F   R  +  +HA+   +     NG+LS DFD R
Sbjct: 7    LKPHCVI--LKAPLSSSLLFPFP-LRF---RAVTAFKHANIQCELEGRPNGALSGDFDPR 60

Query: 1307 FTDRQKALEAAMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVE 1128
            F DRQKALEAAMNDINN+FGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRI+E
Sbjct: 61   FIDRQKALEAAMNDINNNFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIIE 120

Query: 1127 VYGPESSGKTTLALHAIAEVQRLGGNAMLVDAEHAFDPAYSKDLGVDIENLIVCQPDNGE 948
            +YGPESSGKTTLALHAIAEVQ+LGGNAMLVDAEHAFDPAYSK LGVD+ENLIVCQPD+GE
Sbjct: 121  IYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGE 180

Query: 947  MALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNAS 768
            MALE ADRMCRSGA+DLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKMSGNAS
Sbjct: 181  MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNAS 240

Query: 767  KAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDIGLX 588
            KAGCTL+FLNQIRYKIGV+YGNPEVTSGGIALKFFAS+RLE+R TGKIKS KGDE+IGL 
Sbjct: 241  KAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEVRPTGKIKSAKGDEEIGLK 300

Query: 587  XXXXXXXXXXXRPYKQAEFDIVFGQGVSQLGCILDCAETMDLIVKKGSWYSYEEHRLGQG 408
                       RPYK AEF+I+FG+G+S+LGCILDCAE  D++ KKGSWYSY +HRLGQG
Sbjct: 301  VRLRVQKSKVSRPYKIAEFEIIFGEGISKLGCILDCAEMTDIVSKKGSWYSYGDHRLGQG 360

Query: 407  RDKALQHLRENPLLCSEIEKVVRSKIADATKQAS 306
            RDKA+Q+L+EN  L  EIEKVVRS + D T Q S
Sbjct: 361  RDKAIQYLKENTHLLEEIEKVVRSSLIDGTNQTS 394


>ref|XP_002271727.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like
            [Vitis vinifera]
          Length = 415

 Score =  579 bits (1493), Expect = e-163
 Identities = 299/391 (76%), Positives = 329/391 (84%)
 Frame = -1

Query: 1457 FYLKTSAKQPLQFPVTRLSFSSDRQTSKTQHASKTRSEFNGSLSDDFDSRFTDRQKALEA 1278
            F LKT    P  FP + L      +  + +   +   + NG+LS D D RF DRQKALEA
Sbjct: 13   FPLKTLL--PSAFPSSSLPPHMGAKRQQMRLRCEFEVKVNGALSSDPDPRFLDRQKALEA 70

Query: 1277 AMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEVYGPESSGKT 1098
            AMNDIN+SFGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRIVE+YGPESSGKT
Sbjct: 71   AMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKT 130

Query: 1097 TLALHAIAEVQRLGGNAMLVDAEHAFDPAYSKDLGVDIENLIVCQPDNGEMALETADRMC 918
            TLALHAIAEVQ+LGGNAMLVDAEHAFDPAYSK LGVD+ENLIVCQPD+GEMALE ADRMC
Sbjct: 131  TLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMC 190

Query: 917  RSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLN 738
            RSGA+DLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTL+FLN
Sbjct: 191  RSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLN 250

Query: 737  QIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDIGLXXXXXXXXXXX 558
            QIRYKIGV+YGNPEVTSGGIALKFFAS+RLEIR  GKIKS KGDEDIGL           
Sbjct: 251  QIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIKSSKGDEDIGLRVRVRVQKSKV 310

Query: 557  XRPYKQAEFDIVFGQGVSQLGCILDCAETMDLIVKKGSWYSYEEHRLGQGRDKALQHLRE 378
             RPYKQAEF+I+FG+GVS+LGCILDCAE MD++VKKGSWYSY ++RLGQGRD+ALQ+LRE
Sbjct: 311  SRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSWYSYGDNRLGQGRDRALQYLRE 370

Query: 377  NPLLCSEIEKVVRSKIADATKQASLTQSRPS 285
            NPL+C EIEK+VR  +A+   Q      R S
Sbjct: 371  NPLVCHEIEKIVRPMMAEGIGQLGAPHVRLS 401


>emb|CBI21810.3| unnamed protein product [Vitis vinifera]
          Length = 384

 Score =  578 bits (1490), Expect = e-162
 Identities = 294/362 (81%), Positives = 319/362 (88%), Gaps = 4/362 (1%)
 Frame = -1

Query: 1358 KTRSEF----NGSLSDDFDSRFTDRQKALEAAMNDINNSFGKGSVTRLGSAGGALVETFP 1191
            + R EF    NG+LS D D RF DRQKALEAAMNDIN+SFGKGSVTRLGSAGGALVETFP
Sbjct: 9    RLRCEFEVKVNGALSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFP 68

Query: 1190 SGCLTLDLALGGGLPKGRIVEVYGPESSGKTTLALHAIAEVQRLGGNAMLVDAEHAFDPA 1011
            SGCLTLD ALGGGLPKGRIVE+YGPESSGKTTLALHAIAEVQ+LGGNAMLVDAEHAFDPA
Sbjct: 69   SGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPA 128

Query: 1010 YSKDLGVDIENLIVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQ 831
            YSK LGVD+ENLIVCQPD+GEMALE ADRMCRSGA+DLICVDSVSALTPRAEIEGEIGMQ
Sbjct: 129  YSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQ 188

Query: 830  QMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVR 651
            QMGLQARLMSQALRKMSGNASKAGCTL+FLNQIRYKIGV+YGNPEVTSGGIALKFFAS+R
Sbjct: 189  QMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLR 248

Query: 650  LEIRSTGKIKSVKGDEDIGLXXXXXXXXXXXXRPYKQAEFDIVFGQGVSQLGCILDCAET 471
            LEIR  GKIKS KGDEDIGL            RPYKQAEF+I+FG+GVS+LGCILDCAE 
Sbjct: 249  LEIRPIGKIKSSKGDEDIGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEL 308

Query: 470  MDLIVKKGSWYSYEEHRLGQGRDKALQHLRENPLLCSEIEKVVRSKIADATKQASLTQSR 291
            MD++VKKGSWYSY ++RLGQGRD+ALQ+LRENPL+C EIEK+VR  +A+   Q      R
Sbjct: 309  MDVVVKKGSWYSYGDNRLGQGRDRALQYLRENPLVCHEIEKIVRPMMAEGIGQLGAPHVR 368

Query: 290  PS 285
             S
Sbjct: 369  LS 370


>ref|XP_003562018.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like
            isoform 1 [Brachypodium distachyon]
          Length = 412

 Score =  577 bits (1487), Expect = e-162
 Identities = 292/377 (77%), Positives = 323/377 (85%), Gaps = 5/377 (1%)
 Frame = -1

Query: 1418 PVTRLSFSSDRQTSKTQHASKTRSEF-----NGSLSDDFDSRFTDRQKALEAAMNDINNS 1254
            P  R+S +    +  T    + R EF     NG+LS + D R  DRQKAL+AAMNDINNS
Sbjct: 18   PRRRVSATRASASGTTGRGRRLRCEFVASVGNGALSGEDDPRLIDRQKALDAAMNDINNS 77

Query: 1253 FGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEVYGPESSGKTTLALHAIA 1074
            FGKGSVTRLGSAGGA VETFPSGCLTLD ALGGGLPKGR+VEVYGPESSGKTTLALHAIA
Sbjct: 78   FGKGSVTRLGSAGGAFVETFPSGCLTLDFALGGGLPKGRVVEVYGPESSGKTTLALHAIA 137

Query: 1073 EVQRLGGNAMLVDAEHAFDPAYSKDLGVDIENLIVCQPDNGEMALETADRMCRSGAVDLI 894
            E+Q+LGGNAMLVDAEHAFDPAYSK LGVDIENLIVCQPDNGEMALE ADRMCRSGA+DLI
Sbjct: 138  EIQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPDNGEMALEIADRMCRSGAIDLI 197

Query: 893  CVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGV 714
            C+DSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGV
Sbjct: 198  CIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGV 257

Query: 713  FYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDIGLXXXXXXXXXXXXRPYKQAE 534
            FYGNPEVTSGGIALKFFASVRLEIR  GKIKS KGDED+G+            RPYKQAE
Sbjct: 258  FYGNPEVTSGGIALKFFASVRLEIRHIGKIKSAKGDEDVGVKVRVRVQKSKVSRPYKQAE 317

Query: 533  FDIVFGQGVSQLGCILDCAETMDLIVKKGSWYSYEEHRLGQGRDKALQHLRENPLLCSEI 354
            F+I+FG+GVS+LGCILDCAE M+++ KKGSWYSY++ RLGQGR+KALQ+LRE+P +C EI
Sbjct: 318  FEIMFGEGVSKLGCILDCAELMEVVAKKGSWYSYKDIRLGQGREKALQYLRESPTICDEI 377

Query: 353  EKVVRSKIADATKQASL 303
            EKVVR+ I + T+  +L
Sbjct: 378  EKVVRAMIPEGTRHMTL 394