BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018149
         (1727 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17575.3| unnamed protein product [Vitis vinifera]              604   e-170
ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containi...   595   e-167
ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containi...   550   e-154
ref|XP_003631109.1| Pentatricopeptide repeat-containing protein ...   546   e-153
ref|XP_004165472.1| PREDICTED: pentatricopeptide repeat-containi...   517   e-144

>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score =  604 bits (1558), Expect = e-170
 Identities = 302/537 (56%), Positives = 392/537 (72%), Gaps = 17/537 (3%)
 Frame = +2

Query: 149  LHSFEHKKYIRPFKRKMGKPIKSKTNDQKDPKVYMRNTIGMISNILRYSTWDSAQEQLDK 328
            LH F  KK ++   +K  KP + +  D K   +YMR+TIG IS ILRY TWDSAQEQL+K
Sbjct: 96   LHQFRQKKPVQRTSQKFRKPTEKENVDHK---IYMRDTIGNISKILRYLTWDSAQEQLEK 152

Query: 329  LSIKWDSYTINQVLKTHPPMEKAWLFFNWALRLRGFKHDQYTYTTMLDIFGEAGRISSMK 508
            LSI+WDSYT+NQVLK+HPPMEKAWLFFNWA RL+GFKHDQ+TYTTMLDIFGEA RI SM 
Sbjct: 153  LSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMN 212

Query: 509  LVFQQMQEKGIIVDAVTYTALLHWLSKSGDLEGSLEMWEEMKVKECSPTVVTYTAVMKVL 688
             VFQQMQEKGI  DAVTYT+L+HW S  GD+E ++ +W+EMK K C  TVV+YTA MK+L
Sbjct: 213  YVFQQMQEKGIKTDAVTYTSLMHWFSNDGDIERAVRVWKEMKAKGCCLTVVSYTAYMKIL 272

Query: 689  FDNNRAKDATEVYKEMLESGCSPNCYTYTVLMEYLISTG-----------RFKEALEIMS 835
            FDN R K+A +VYKEML+SGC+PNCYTYTVLME+L  +G           ++K ALEI S
Sbjct: 273  FDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKHLLQFSCIACKYKAALEIFS 332

Query: 836  KMQEAGVQPDKATCNILVQKFSRAGEIWAVNHILKYMKEHKLVLRHPVYVQALQALKVAG 1015
            +MQEAGVQPDKATCNIL++KF + G+ WA+  IL YMK++ LVLR+PVY++ALQ LKVAG
Sbjct: 333  RMQEAGVQPDKATCNILIEKFCKTGQTWAITQILLYMKDNFLVLRYPVYLEALQTLKVAG 392

Query: 1016 ESNELLKEANRHLSL------EGTDVEEVTADFHSTVDTAIIKNLLAKRNFIAVEHIIDG 1177
            ES+ LL++ N HL++      E  + +E  AD HST+D   +   L K+NF A++ ++ G
Sbjct: 393  ESDILLRQVNPHLNVGLSSKEEIVEFKETVADVHSTIDRGFVLLFLTKQNFYAIDCLLTG 452

Query: 1178 MISTNIQVSSKLISAIIQSSCVNNRPTCAVSAYNYGIKMGICIERQACLSLIGFMIRSNL 1357
            MI  N ++ S +IS II+ +C + R   A+ A+ Y +KMGI IER A L+L+G  IR+N 
Sbjct: 453  MIHKNTRLDSVIISQIIEVNCAHCRINGALLAFEYSVKMGINIERIAYLALMGVFIRANS 512

Query: 1358 FSELVEIVENMVGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALM 1537
            F ++ +IVE MV +G+SLG YL +L+IY+LG  + P S  ++F  LPDDQK T  YTAL+
Sbjct: 513  FPKVADIVEKMVRAGISLGMYLGALLIYRLGCARRPGSAAKVFGLLPDDQKGTAAYTALI 572

Query: 1538 GAYFCSREVDKGLDIFHTMRRNGVPASPSTYRLLIVGLKEAGRVYEAEKYIKEERSV 1708
             AYF S  VDKGL I+ TM+R  +  +  TY LL+ GL++ GR  EAE Y KE++++
Sbjct: 573  SAYFSSGNVDKGLKIYKTMQRKRIHPALGTYNLLLAGLEKKGRAREAEIYRKEKKTL 629


>ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like
            [Vitis vinifera]
          Length = 519

 Score =  595 bits (1534), Expect = e-167
 Identities = 291/492 (59%), Positives = 375/492 (76%), Gaps = 6/492 (1%)
 Frame = +2

Query: 251  MRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWALRLR 430
            MR+TIG IS ILRY TWDSAQEQL+KLSI+WDSYT+NQVLK+HPPMEKAWLFFNWA RL+
Sbjct: 1    MRDTIGNISKILRYLTWDSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLK 60

Query: 431  GFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWLSKSGDLEGS 610
            GFKHDQ+TYTTMLDIFGEA RI SM  VFQQMQEKGI  DAVTYT+L+HW S  GD+E +
Sbjct: 61   GFKHDQFTYTTMLDIFGEARRIESMNYVFQQMQEKGIKTDAVTYTSLMHWFSNDGDIERA 120

Query: 611  LEMWEEMKVKECSPTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNCYTYTVLMEY 790
            + +W+EMK K C  TVV+YTA MK+LFDN R K+A +VYKEML+SGC+PNCYTYTVLME+
Sbjct: 121  VRVWKEMKAKGCCLTVVSYTAYMKILFDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEH 180

Query: 791  LISTGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRAGEIWAVNHILKYMKEHKLVLR 970
            L  +G++K ALEI S+MQEAGVQPDKATCNIL++KF + G+ WA+  IL YMK++ LVLR
Sbjct: 181  LTGSGKYKAALEIFSRMQEAGVQPDKATCNILIEKFCKTGQTWAITQILLYMKDNFLVLR 240

Query: 971  HPVYVQALQALKVAGESNELLKEANRHLSL------EGTDVEEVTADFHSTVDTAIIKNL 1132
            +PVY++ALQ LKVAGES+ LL++ N HL++      E  + +E  AD HST+D   +   
Sbjct: 241  YPVYLEALQTLKVAGESDILLRQVNPHLNVGLSSKEEIVEFKETVADVHSTIDRGFVLLF 300

Query: 1133 LAKRNFIAVEHIIDGMISTNIQVSSKLISAIIQSSCVNNRPTCAVSAYNYGIKMGICIER 1312
            L K+NF A++ ++ GMI  N ++ S +IS II+ +C + R   A+ A+ Y +KMGI IER
Sbjct: 301  LTKQNFYAIDCLLTGMIHKNTRLDSVIISQIIEVNCAHCRINGALLAFEYSVKMGINIER 360

Query: 1313 QACLSLIGFMIRSNLFSELVEIVENMVGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCS 1492
             A L+L+G  IR+N F ++ +IVE MV +G+SLG YL +L+IY+LG  + P S  ++F  
Sbjct: 361  IAYLALMGVFIRANSFPKVADIVEKMVRAGISLGMYLGALLIYRLGCARRPGSAAKVFGL 420

Query: 1493 LPDDQKNTVTYTALMGAYFCSREVDKGLDIFHTMRRNGVPASPSTYRLLIVGLKEAGRVY 1672
            LPDDQK T  YTAL+ AYF S  VDKGL I+ TM+R  +  +  TY LL+ GL++ GR  
Sbjct: 421  LPDDQKGTAAYTALISAYFSSGNVDKGLKIYKTMQRKRIHPALGTYNLLLAGLEKKGRAR 480

Query: 1673 EAEKYIKEERSV 1708
            EAE Y KE++++
Sbjct: 481  EAEIYRKEKKTL 492


>ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like
            [Glycine max]
          Length = 585

 Score =  550 bits (1416), Expect = e-154
 Identities = 276/547 (50%), Positives = 380/547 (69%), Gaps = 6/547 (1%)
 Frame = +2

Query: 80   YRVHGLLRTFANSKLIKYVNVKGLHSFEHKKYIRPFKRKMGKPIKSKTNDQKDPKVYMRN 259
            Y+ HG +R      L+   + + +HS    K        M K  K K  D+  P+ YMRN
Sbjct: 22   YKFHGFIRI-----LVPSPSTRAMHSLNQSK-------PMKKAEKLKLKDE--PREYMRN 67

Query: 260  TIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWALRLRGFK 439
             IG I N+L+YS+W+SA++ L+ LS+KWDSYT+NQVLK+HPPMEKAWLFFNW   LRGFK
Sbjct: 68   VIGKIYNMLKYSSWESAEQDLNNLSMKWDSYTVNQVLKSHPPMEKAWLFFNWVSSLRGFK 127

Query: 440  HDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWLSKSGDLEGSLEM 619
            HD YTYTTMLDIFGEAGR+SSMK +FQQMQEKGI +D+VTYT+++HWLS SG+ + +++M
Sbjct: 128  HDHYTYTTMLDIFGEAGRVSSMKHLFQQMQEKGIKLDSVTYTSMMHWLSSSGNFDEAMQM 187

Query: 620  WEEMKVKECSPTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNCYTYTVLMEYLIS 799
            W++MK K   PTVV+YTA +K+LF N R K+AT  YKEM+ S  +PNC+TYTVLM+YLI 
Sbjct: 188  WDQMKSKGFHPTVVSYTAYIKILFHNQRVKEATRAYKEMISSRVAPNCHTYTVLMDYLIG 247

Query: 800  TGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRAGEIWAVNHILKYMKEHKLVLRHPV 979
            +G++KEALEI  KMQEAG QPDKA CNIL+++ S+ G    + HIL+YMKE++LVLR+PV
Sbjct: 248  SGQYKEALEIFEKMQEAGAQPDKAACNILIERCSKVGGTEFMTHILQYMKENRLVLRYPV 307

Query: 980  YVQALQALKVAGESNELLKEANRHLSLE------GTDVEEVTADFHSTVDTAIIKNLLAK 1141
            +V+AL+ALK+AGES+ LL++ N    ++       ++   V AD  + +D  ++  LL  
Sbjct: 308  FVKALEALKIAGESDTLLRQVNPQFYMDCIIRKKASNTITVAADCPTNIDKELLFVLLKN 367

Query: 1142 RNFIAVEHIIDGMISTNIQVSSKLISAIIQSSCVNNRPTCAVSAYNYGIKMGICIERQAC 1321
            RN +A++H++ GM+   I +  K++S II+ +C + RP  A+ A+ Y + MGI IER   
Sbjct: 368  RNVVAIDHLLTGMMDKKISLDHKVVSTIIEVNCSHCRPEGALLAFKYSVTMGISIERTGY 427

Query: 1322 LSLIGFMIRSNLFSELVEIVENMVGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPD 1501
            LSLIG +IRSN+FS+L EIVE M  +G SLG YL SL+I++LG  +     ++IF  LPD
Sbjct: 428  LSLIGLLIRSNMFSKLAEIVEKMTRAGHSLGIYLASLLIFRLGCARKHTLAMKIFNLLPD 487

Query: 1502 DQKNTVTYTALMGAYFCSREVDKGLDIFHTMRRNGVPASPSTYRLLIVGLKEAGRVYEAE 1681
            + K + TYTAL+  YF  R V++ L+I+  M   G      TY +LI GL+  G+  EAE
Sbjct: 488  NHKCSATYTALISVYFSVRRVNEALEIYKIMCSKGFCPVLGTYDVLIAGLERNGKYAEAE 547

Query: 1682 KYIKEER 1702
             Y K ++
Sbjct: 548  HYRKAKK 554


>ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355525131|gb|AET05585.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 687

 Score =  546 bits (1407), Expect = e-153
 Identities = 272/494 (55%), Positives = 363/494 (73%), Gaps = 7/494 (1%)
 Frame = +2

Query: 248  YMRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWALRL 427
            YMRN IG I   L+YS+WDSAQ+QL  L +KWDSYT+NQVLK+HPPMEKAWLFFNWA RL
Sbjct: 167  YMRNVIGNIYRTLKYSSWDSAQQQLQNLPLKWDSYTVNQVLKSHPPMEKAWLFFNWASRL 226

Query: 428  RGFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWLSKSGDLEG 607
            +GFKHDQ+TYTTMLDIFGEAGRISSMK VF QM EKGI +D+VTYT+++HWLS SG+++ 
Sbjct: 227  KGFKHDQFTYTTMLDIFGEAGRISSMKHVFNQMHEKGIKIDSVTYTSMMHWLSTSGNVDE 286

Query: 608  SLEMWEEMKVKECS-PTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNCYTYTVLM 784
            ++ +W+EMK K C  PTVV+YTA +K+LFDN+R K+AT +YKEML +GC PNCYTYTVLM
Sbjct: 287  AIALWDEMKSKGCCYPTVVSYTAFIKILFDNHRVKEATAIYKEMLHNGCVPNCYTYTVLM 346

Query: 785  EYLISTGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRAGEIWAVNHILKYMKEHKLV 964
            ++LI++G+ KEALEI  KMQEAGV+PDKA CNIL+ K S+      +  IL+YMKE++LV
Sbjct: 347  DHLIASGKCKEALEIFQKMQEAGVEPDKAACNILIDKCSKVCGTVFMTKILQYMKENRLV 406

Query: 965  LRHPVYVQALQALKVAGESNELLKEANRHLSLEGT------DVEEVTADFHSTVDTAIIK 1126
            LR+ VYV+A++ALK+AGES+ LL++ N H  L+ +      D   V AD  S +D  ++ 
Sbjct: 407  LRYRVYVKAMEALKIAGESDTLLRQVNPHFYLDSSFKEKAHDRNTVIADSSSNIDKELLL 466

Query: 1127 NLLAKRNFIAVEHIIDGMISTNIQVSSKLISAIIQSSCVNNRPTCAVSAYNYGIKMGICI 1306
             LL  RN +A++H+I GM+   I V +K+IS II+ +C   RP  A+ A+NY + MGI I
Sbjct: 467  VLLRNRNVVAIDHLIQGMMDKKISVDNKVISTIIEVNCNCCRPDGALLAFNYSVTMGISI 526

Query: 1307 ERQACLSLIGFMIRSNLFSELVEIVENMVGSGVSLGTYLLSLVIYKLGSTQMPASCLRIF 1486
            ER   LSL+G + RSN+FS+LVEIV  M  +G SLG YL SL+IY+LG  +  +  L+IF
Sbjct: 527  ERTGYLSLVGLLNRSNMFSKLVEIVGEMTRAGHSLGIYLASLLIYRLGCARQLSIALKIF 586

Query: 1487 CSLPDDQKNTVTYTALMGAYFCSREVDKGLDIFHTMRRNGVPASPSTYRLLIVGLKEAGR 1666
              LPD+ K   TYTAL+  YF +R V+K L+I+  M + G   +  T+ +L+ GL+  GR
Sbjct: 587  NLLPDNHKCVATYTALISIYFSARRVNKALEIYKIMCQKGNCPTSGTFNILVAGLERNGR 646

Query: 1667 VYEAEKYIKEERSV 1708
              EA  + K ++++
Sbjct: 647  FSEAGVHRKAKKNL 660


>ref|XP_004165472.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like
            [Cucumis sativus]
          Length = 737

 Score =  517 bits (1331), Expect = e-144
 Identities = 259/527 (49%), Positives = 356/527 (67%), Gaps = 6/527 (1%)
 Frame = +2

Query: 149  LHSFEHKKYIRPFKRKMGKPIKSKTNDQKDPKVYMRNTIGMISNILRYSTWDSAQEQLDK 328
            LH ++  K I  F R+  K  K    ++  P++Y R+T+  I NILR  +W SAQ+ L+ 
Sbjct: 102  LHQYKRDKPISRFSRQSRKGTKVAKKEEVIPRLYTRDTVRNICNILRNCSWASAQKHLEM 161

Query: 329  LSIKWDSYTINQVLKTHPPMEKAWLFFNWALRLRGFKHDQYTYTTMLDIFGEAGRISSMK 508
            L I+WDSY INQVLKTHPP+EK WLFFNWA  L+ FKHDQYTYTTMLDIFGEAGRISSM 
Sbjct: 162  LPIRWDSYLINQVLKTHPPLEKTWLFFNWASTLQVFKHDQYTYTTMLDIFGEAGRISSMN 221

Query: 509  LVFQQMQEKGIIVDAVTYTALLHWLSKSGDLEGSLEMWEEMKVKECSPTVVTYTAVMKVL 688
             VFQQM+EKGI +DAVTYT+L+HW S SGD++G++++W+EMK   C PTVV+YTA +K+L
Sbjct: 222  YVFQQMKEKGIKIDAVTYTSLMHWRSNSGDVDGAIKVWKEMKANGCHPTVVSYTAYIKIL 281

Query: 689  FDNNRAKDATEVYKEMLESGCSPNCYTYTVLMEYLISTGRFKEALEIMSKMQEAGVQPDK 868
             DN +  +AT  YK+ML+SG SPNC TYT+LMEYLI  G+ KEAL+I SKMQ+AGV PDK
Sbjct: 282  LDNGQINEATATYKKMLQSGLSPNCCTYTILMEYLIGEGKCKEALDIFSKMQDAGVYPDK 341

Query: 869  ATCNILVQKFSRAGEIWAVNHILKYMKEHKLVLRHPVYVQALQALKVAGESNELLKEANR 1048
            A CNIL+QK  ++GE   +  IL++MKE++ VLR+PV+V+A + LK    S  LLK+ N 
Sbjct: 342  AACNILIQKCCKSGERLVMTQILEFMKENRFVLRYPVFVEAHETLKSCSVSYALLKQVNP 401

Query: 1049 HLSLEG------TDVEEVTADFHSTVDTAIIKNLLAKRNFIAVEHIIDGMISTNIQVSSK 1210
            H+ +E        DV   +      VD  ++  LL      AV+H++ G++  NIQ+ S 
Sbjct: 402  HMEIESISKGEVVDVSTGSNTVPPNVDNELLAMLLKDNKLTAVDHMLIGIVDKNIQLDSS 461

Query: 1211 LISAIIQSSCVNNRPTCAVSAYNYGIKMGICIERQACLSLIGFMIRSNLFSELVEIVENM 1390
            +I +II+ +C +NRP  A+ A++Y +K  + I+R+  L LIG +IRS+++ +L+EIV+ M
Sbjct: 462  IIYSIIEVNCKSNRPNSALLAFDYCLKNSVNIKRKLYLDLIGILIRSSIYPKLLEIVQEM 521

Query: 1391 VGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDK 1570
               G  LG Y  +L++Y LG    P    ++F  LP++ K T TYTAL+  YF +    K
Sbjct: 522  YTQGHCLGLYHATLILYSLGKAGKPQYARKVFNMLPEELKCTATYTALVDGYFSAGSSGK 581

Query: 1571 GLDIFHTMRRNGVPASPSTYRLLIVGLKEAGRVYEAEKYIKEERSVQ 1711
            GL IF TMR+ G   S  TY +L+ GL + GR  E   Y +E++S +
Sbjct: 582  GLKIFETMRKKGFTPSLGTYNVLLNGLAKNGRGVELNIYRREKKSFE 628