BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018127
         (1359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95820.1| retrotransposon protein, putative, unclassified [...   262   e-123
gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]     256   e-121
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat...   235   e-115
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   226   e-115
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   232   e-114

>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  262 bits (669), Expect(3) = e-123
 Identities = 129/226 (57%), Positives = 171/226 (75%)
 Frame = +2

Query: 566  DGALKVDEKVYQCLVGSLLYLTHTRLYIMYTVSLLSRFLSEPSKLHLAAAKRVLRYLQGT 745
            DGA KVD  +Y+ LVGSLLYLT TR  IM+  SLLSR++S PS+L+  AAKRVLRY++GT
Sbjct: 914  DGADKVDPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAKRVLRYIKGT 973

Query: 746  KSFGLKYVKEEVNSLIGFTDSYWAGSLDDRKSTSGYAFCLGSKLIAWSSKKQKTVALSSV 925
              +G+ Y   + + LIG+TDS WAG LDD K TSGYAF LGS + +WS+KKQ  VALSS 
Sbjct: 974  ADYGIWYKPVKESKLIGYTDSDWAGCLDDMKGTSGYAFSLGSGMCSWSTKKQNIVALSSA 1033

Query: 926  EAEYIVAMDAVCEGVWLRRILKDLQQEVKTPTTIFCDNMFAIVMTKNPVFHSRTKHIELR 1105
            EAEY+ A  AV + VWLRRI++DL ++   PTTI+CD+  AI +++NPV H RTKHI ++
Sbjct: 1034 EAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAISENPVSHDRTKHIAIK 1093

Query: 1106 YHYIRHKVEKKKVELKFINTNEQLTDMLTKAVSMDKFVRARDTMNV 1243
            YHYIR  V++++V+L+F  T+EQL D+ TKA+S +KFVR R+ + V
Sbjct: 1094 YHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKEKFVRDRELIGV 1139



 Score =  124 bits (310), Expect(3) = e-123
 Identities = 59/98 (60%), Positives = 74/98 (75%)
 Frame = +1

Query: 271  LYIKKEGNELLIVCLYVDDLIYTSTSMKMLQDFKEAMMKEYEMTDLGLMKYFLGIQVQQS 450
            LY+ K G ++LIV LYVDDLIYT  S KM+QDFK+ MM  YEM+DLGL+ YFLG++V QS
Sbjct: 814  LYVNKTGTDILIVSLYVDDLIYTGNSEKMMQDFKKDMMHTYEMSDLGLLYYFLGMEVHQS 873

Query: 451  RGNIFISQEKYLEDLLKRFSMSNCKLISSPAALNEKLK 564
               IFISQ KY E++LK+F M NCK +++P   NEK K
Sbjct: 874  DEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEKQK 911



 Score =  105 bits (263), Expect(3) = e-123
 Identities = 51/80 (63%), Positives = 63/80 (78%)
 Frame = +3

Query: 3   ALAAQMELPVFQLDVKSAFLNGDLEEEVYIEQTLGYVKEGAENKVYKLQKVLYGLKQAPR 182
           ALAAQ    ++QLDVKSAFLNG L+EE+Y+EQ  G+  +G ENKV++L+K LYGLKQAPR
Sbjct: 731 ALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQAPR 790

Query: 183 TWNSKIDGYFQQTGFSKSRS 242
            W S+ID YF Q GF+KS S
Sbjct: 791 VWYSQIDKYFIQKGFAKSIS 810


>gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1136

 Score =  256 bits (655), Expect(3) = e-121
 Identities = 127/226 (56%), Positives = 169/226 (74%)
 Frame = +2

Query: 566  DGALKVDEKVYQCLVGSLLYLTHTRLYIMYTVSLLSRFLSEPSKLHLAAAKRVLRYLQGT 745
            DGA K D  +Y+ LVGSLLYLT TR  IM+  SLLSR++S PS+L+  AAKRVLRY++GT
Sbjct: 908  DGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAKRVLRYIKGT 967

Query: 746  KSFGLKYVKEEVNSLIGFTDSYWAGSLDDRKSTSGYAFCLGSKLIAWSSKKQKTVALSSV 925
              +G+ Y   + + LIG+TDS WAG LDD KSTSGYAF LGS + +WS+KKQ  VALSS 
Sbjct: 968  AYYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFSLGSGMWSWSTKKQNIVALSSA 1027

Query: 926  EAEYIVAMDAVCEGVWLRRILKDLQQEVKTPTTIFCDNMFAIVMTKNPVFHSRTKHIELR 1105
            EAEY+ A  AV + VWLRRI++DL ++   PTTI+CD+  AI + +NPV H RTKHI ++
Sbjct: 1028 EAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAINENPVSHDRTKHIAIK 1087

Query: 1106 YHYIRHKVEKKKVELKFINTNEQLTDMLTKAVSMDKFVRARDTMNV 1243
            YHYIR  V++++V+L+F  T+EQL D+ TKA+S +KF+  R+ + V
Sbjct: 1088 YHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKEKFICDRELIGV 1133



 Score =  126 bits (316), Expect(3) = e-121
 Identities = 59/99 (59%), Positives = 76/99 (76%)
 Frame = +1

Query: 268  VLYIKKEGNELLIVCLYVDDLIYTSTSMKMLQDFKEAMMKEYEMTDLGLMKYFLGIQVQQ 447
            +LY+KK G ++LIV LYVDDLIYT  S K++QDFK+ MM  YEM+DLGL+ YFLG++V Q
Sbjct: 807  ILYVKKTGTDILIVSLYVDDLIYTGNSEKLMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQ 866

Query: 448  SRGNIFISQEKYLEDLLKRFSMSNCKLISSPAALNEKLK 564
            S   IFISQ KY E++LK+F M NCK +++P   NEK K
Sbjct: 867  SDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEKQK 905



 Score =  102 bits (255), Expect(3) = e-121
 Identities = 50/80 (62%), Positives = 62/80 (77%)
 Frame = +3

Query: 3   ALAAQMELPVFQLDVKSAFLNGDLEEEVYIEQTLGYVKEGAENKVYKLQKVLYGLKQAPR 182
           ALAAQ    ++QLDVKSAFLNG L+EE+Y+EQ   +  +G ENKV++L+K LYGLKQAPR
Sbjct: 725 ALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPERFSVQGGENKVFRLKKALYGLKQAPR 784

Query: 183 TWNSKIDGYFQQTGFSKSRS 242
            W S+ID YF Q GF+KS S
Sbjct: 785 AWYSQIDKYFIQKGFAKSIS 804


>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108708461|gb|ABF96256.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1167

 Score =  235 bits (600), Expect(3) = e-115
 Identities = 121/226 (53%), Positives = 159/226 (70%)
 Frame = +2

Query: 566  DGALKVDEKVYQCLVGSLLYLTHTRLYIMYTVSLLSRFLSEPSKLHLAAAKRVLRYLQGT 745
            DGA KVD  +Y+ LVGSLLYLT TR  IM+  SLLSR++S PS+L+  AAKRVLRY++GT
Sbjct: 956  DGADKVDPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAKRVLRYIKGT 1015

Query: 746  KSFGLKYVKEEVNSLIGFTDSYWAGSLDDRKSTSGYAFCLGSKLIAWSSKKQKTVALSSV 925
              +G+ Y   + + LIG+TDS WAG LDD KSTSGYAF LGS                  
Sbjct: 1016 ADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFSLGS-----------------A 1058

Query: 926  EAEYIVAMDAVCEGVWLRRILKDLQQEVKTPTTIFCDNMFAIVMTKNPVFHSRTKHIELR 1105
            EAEY+ A  AV + VWLRRI++DL ++   PTTI+CD+  AI +++NPV H RTKHI ++
Sbjct: 1059 EAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAISENPVSHDRTKHIAIK 1118

Query: 1106 YHYIRHKVEKKKVELKFINTNEQLTDMLTKAVSMDKFVRARDTMNV 1243
            YHYIR  V++++V+L+F  TNEQL D+ TKA+S +KFVR R+ + V
Sbjct: 1119 YHYIREAVDRQEVKLEFCRTNEQLADIFTKALSKEKFVRDRELIGV 1164



 Score =  124 bits (311), Expect(3) = e-115
 Identities = 60/98 (61%), Positives = 73/98 (74%)
 Frame = +1

Query: 271  LYIKKEGNELLIVCLYVDDLIYTSTSMKMLQDFKEAMMKEYEMTDLGLMKYFLGIQVQQS 450
            LYI K G ++LIV LYVDDLIYT  S KM+QDFK  MM  YEM+DLGL+ YFLG++V QS
Sbjct: 856  LYINKTGTDILIVSLYVDDLIYTGNSEKMMQDFKRDMMHTYEMSDLGLLHYFLGMEVHQS 915

Query: 451  RGNIFISQEKYLEDLLKRFSMSNCKLISSPAALNEKLK 564
               IFISQ KY E++LK+F M NCK +++P   NEK K
Sbjct: 916  DEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEKQK 953



 Score =  105 bits (263), Expect(3) = e-115
 Identities = 51/80 (63%), Positives = 63/80 (78%)
 Frame = +3

Query: 3    ALAAQMELPVFQLDVKSAFLNGDLEEEVYIEQTLGYVKEGAENKVYKLQKVLYGLKQAPR 182
            ALAAQ    ++QLDVKSAFLNG L+EE+Y+EQ  G+  +G ENKV++L+K LYGLKQAPR
Sbjct: 773  ALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQAPR 832

Query: 183  TWNSKIDGYFQQTGFSKSRS 242
             W S+ID YF Q GF+KS S
Sbjct: 833  VWYSQIDKYFIQKGFAKSIS 852


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  226 bits (575), Expect(3) = e-115
 Identities = 119/236 (50%), Positives = 153/236 (64%)
 Frame = +2

Query: 566  DGALKVDEKVYQCLVGSLLYLTHTRLYIMYTVSLLSRFLSEPSKLHLAAAKRVLRYLQGT 745
            DG  K + K+++ LVG L YLTHTR  I ++VS++SRFL  P+K H  AAKRVLRY+ GT
Sbjct: 1098 DGTEKANPKLFRSLVGGLNYLTHTRPDIAFSVSVVSRFLQSPTKQHFGAAKRVLRYVAGT 1157

Query: 746  KSFGLKYVKEEVNSLIGFTDSYWAGSLDDRKSTSGYAFCLGSKLIAWSSKKQKTVALSSV 925
              FG+ Y K     L+GFTDS +AG LDDRKSTSG  F  GS ++ WSSKKQ+TVALS+ 
Sbjct: 1158 TDFGIWYSKAPNFRLVGFTDSDYAGCLDDRKSTSGSCFSFGSGVVTWSSKKQETVALSTS 1217

Query: 926  EAEYIVAMDAVCEGVWLRRILKDLQQEVKTPTTIFCDNMFAIVMTKNPVFHSRTKHIELR 1105
            EAEY  A  A  + +WLR++L+D   E K  T IF D+  AI M KNP FH RTKHI+++
Sbjct: 1218 EAEYTAASLAARQALWLRKLLEDFSYEQKESTEIFSDSKSAIAMAKNPSFHGRTKHIDVQ 1277

Query: 1106 YHYIRHKVEKKKVELKFINTNEQLTDMLTKAVSMDKFVRARDTMNVAAS*QEGGAS 1273
            YH+IR  V   ++ LKF +TNEQ  D+ TK++   K    R  + V      G  S
Sbjct: 1278 YHFIRTLVADGRIVLKFCSTNEQAADIFTKSLPQAKHEYFRLQLGVCDFESRGSVS 1333



 Score =  123 bits (308), Expect(3) = e-115
 Identities = 56/99 (56%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
 Frame = +1

Query: 271  LYIKKEG-NELLIVCLYVDDLIYTSTSMKMLQDFKEAMMKEYEMTDLGLMKYFLGIQVQQ 447
            LY+KK+G +E L+VCLYVDD+IY  +S  ++ DFK  MM+ +EM+DLGL+KYFLG++V Q
Sbjct: 997  LYLKKQGTDEFLLVCLYVDDMIYIGSSKSLVNDFKSNMMRNFEMSDLGLLKYFLGLEVIQ 1056

Query: 448  SRGNIFISQEKYLEDLLKRFSMSNCKLISSPAALNEKLK 564
             +  IFISQ+KY EDLLK+F M NC++ ++P  +NEKL+
Sbjct: 1057 DKDGIFISQKKYAEDLLKKFQMMNCEVATTPMNINEKLQ 1095



 Score =  115 bits (289), Expect(3) = e-115
 Identities = 55/78 (70%), Positives = 64/78 (82%)
 Frame = +3

Query: 3    ALAAQMELPVFQLDVKSAFLNGDLEEEVYIEQTLGYVKEGAENKVYKLQKVLYGLKQAPR 182
            ALAAQ+ LPV+Q DVKSAFLNGDLEEEVY+ Q  G++  G ENKVYKL+K LYGLKQAPR
Sbjct: 914  ALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNENKVYKLRKALYGLKQAPR 973

Query: 183  TWNSKIDGYFQQTGFSKS 236
             W SKID +FQ +GF +S
Sbjct: 974  AWYSKIDSFFQGSGFRRS 991


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score =  232 bits (591), Expect(3) = e-114
 Identities = 119/226 (52%), Positives = 158/226 (69%)
 Frame = +2

Query: 566  DGALKVDEKVYQCLVGSLLYLTHTRLYIMYTVSLLSRFLSEPSKLHLAAAKRVLRYLQGT 745
            DGA K D  +Y+ LVGSLLYLT TR  IM+  SLLSR++S PS+L+  AAKRVLRY++GT
Sbjct: 1124 DGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAKRVLRYIKGT 1183

Query: 746  KSFGLKYVKEEVNSLIGFTDSYWAGSLDDRKSTSGYAFCLGSKLIAWSSKKQKTVALSSV 925
              +G+ Y   + + LIG+TDS WAG LDD KSTSGYAF LGS                  
Sbjct: 1184 ADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFSLGS-----------------A 1226

Query: 926  EAEYIVAMDAVCEGVWLRRILKDLQQEVKTPTTIFCDNMFAIVMTKNPVFHSRTKHIELR 1105
            EAEY+ A  AV + VWLRRI++DL ++   PTTI+CD+  AI +++NPV H RTKHI ++
Sbjct: 1227 EAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAISENPVSHDRTKHIAIK 1286

Query: 1106 YHYIRHKVEKKKVELKFINTNEQLTDMLTKAVSMDKFVRARDTMNV 1243
            YHYIR  V++++V+L+F  T+EQL D+ TKA+S +KFVR R+ + V
Sbjct: 1287 YHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKEKFVRDRELIGV 1332



 Score =  124 bits (311), Expect(3) = e-114
 Identities = 59/98 (60%), Positives = 74/98 (75%)
 Frame = +1

Query: 271  LYIKKEGNELLIVCLYVDDLIYTSTSMKMLQDFKEAMMKEYEMTDLGLMKYFLGIQVQQS 450
            LY+ K G ++LIV LYVDDLIYT  S KM+QDFK+ MM  YEM+DLGL+ YFLG++V QS
Sbjct: 1024 LYVNKTGTDILIVSLYVDDLIYTGNSEKMMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQS 1083

Query: 451  RGNIFISQEKYLEDLLKRFSMSNCKLISSPAALNEKLK 564
               IFISQ KY E++LK+F M NCK +++P   NEK K
Sbjct: 1084 DEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEKQK 1121



 Score =  105 bits (263), Expect(3) = e-114
 Identities = 51/80 (63%), Positives = 63/80 (78%)
 Frame = +3

Query: 3    ALAAQMELPVFQLDVKSAFLNGDLEEEVYIEQTLGYVKEGAENKVYKLQKVLYGLKQAPR 182
            ALAAQ    ++QLDVKSAFLNG L+EE+Y+EQ  G+  +G ENKV++L+K LYGLKQAPR
Sbjct: 941  ALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQAPR 1000

Query: 183  TWNSKIDGYFQQTGFSKSRS 242
             W S+ID YF Q GF+KS S
Sbjct: 1001 AWYSQIDKYFIQKGFAKSIS 1020