BLASTX nr result
ID: Coptis25_contig00018126
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00018126
(1270 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABW74566.1| integrase [Boechera divaricarpa] 273 e-114
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera] 270 e-112
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 256 e-106
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 256 e-106
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 256 e-106
>gb|ABW74566.1| integrase [Boechera divaricarpa]
Length = 1165
Score = 273 bits (699), Expect(2) = e-114
Identities = 136/257 (52%), Positives = 174/257 (67%)
Frame = +3
Query: 384 KYLEDLLKRFSMSNCKPISSPAALNEKLQLNDGALKVDEKVYRSLVGSLLYLTHTRPDIM 563
KY DLLKRF M+ C + +P +NEKL DG K D +RSLVG L+YLTHTRPDI
Sbjct: 898 KYACDLLKRFDMAGCNAVETPMNVNEKLLAGDGTEKADATKFRSLVGGLIYLTHTRPDIC 957
Query: 564 YTVSLLSRFLSEPSKLHLAAAKRVLRYLQGTKNFGLKYVKEEVNSLISFTDSD*AGSLDD 743
+ VS +SRF+ P+K H AAKR+LRY+ T +GL Y L+ FTDSD AG + D
Sbjct: 958 FAVSAISRFMHGPTKQHFGAAKRLLRYIARTAEYGLWYCSVSKFKLVGFTDSDWAGCVQD 1017
Query: 744 KKSTSGYAFCLGSKLIAWSSKKQKIVALSSTEAEYIAVTDAICEGIWLRRILKDLQQEVK 923
+KSTSG+ F LGS + WSSKKQ + ALSS+EAEY A T A C+ +WLRRIL D++QE +
Sbjct: 1018 RKSTSGHVFNLGSGAVCWSSKKQNVTALSSSEAEYTAATAAACQAVWLRRILADIKQEQE 1077
Query: 924 TPTTIFCDNMSAIATTKNPVFQSRTKHIELRYHYIRHKVEKKKVELKFINTNEQLADMLT 1103
TTIFCDN + IA KNP + RTKHI ++ H+IR V + V L++ +TNEQ AD+LT
Sbjct: 1078 KATTIFCDNKATIAMNKNPAYHGRTKHISIKVHFIRDLVSEGSVTLEYCSTNEQSADVLT 1137
Query: 1104 KAVSMDKFV*ARGTMNV 1154
KA+S +KF R + V
Sbjct: 1138 KALSRNKFDYFRSKLGV 1154
Score = 165 bits (418), Expect(2) = e-114
Identities = 74/129 (57%), Positives = 105/129 (81%), Gaps = 1/129 (0%)
Frame = +2
Query: 2 EEVYVEQPLGYVKEGAENKVYKLQKALYSLKQAPRTWNSKIDGYFRQTGFSKSRSEPSLY 181
EEVYV+QP G++ EG E VY+L KALY LKQAPR W +KID YF +TGF +S+SEP+LY
Sbjct: 770 EEVYVDQPEGFIVEGREGFVYRLYKALYGLKQAPRAWYNKIDSYFAETGFERSKSEPTLY 829
Query: 182 IKKEG-NELLIVCLYVDDLIYTGTSMKILQDFKEAMMKEYEMTDLGLMKYFLGIQVQQSK 358
IKK+G ++L+VCLYVDD+IY G+S ++ +FK +MM+++EMTDLGL+ +FLG++V+Q +
Sbjct: 830 IKKQGAGDILVVCLYVDDMIYMGSSASLVSEFKASMMEKFEMTDLGLLYFFLGLEVKQVE 889
Query: 359 GNIFISQEE 385
+F+SQ +
Sbjct: 890 DGVFVSQHK 898
>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
Length = 1424
Score = 270 bits (691), Expect(2) = e-112
Identities = 137/259 (52%), Positives = 180/259 (69%)
Frame = +3
Query: 378 KKKYLEDLLKRFSMSNCKPISSPAALNEKLQLNDGALKVDEKVYRSLVGSLLYLTHTRPD 557
+K+Y+E +LK+F M+ C +S+P +NEKL+ DG VDE +RSLVG+LLYLT TRPD
Sbjct: 1155 QKRYVEHILKKFGMAGCNXVSTPLVVNEKLRKEDGGKMVDETHFRSLVGNLLYLTATRPD 1214
Query: 558 IMYTVSLLSRFLSEPSKLHLAAAKRVLRYLQGTKNFGLKYVKEEVNSLISFTDSD*AGSL 737
IM+ SLLSRF+ PS LHL AAKRVLRYLQGT G+KY + LI DSD G +
Sbjct: 1215 IMFAASLLSRFMHYPSHLHLGAAKRVLRYLQGTVELGIKYFRNIEVKLIGHCDSDWGGCI 1274
Query: 738 DDKKSTSGYAFCLGSKLIAWSSKKQKIVALSSTEAEYIAVTDAICEGIWLRRILKDLQQE 917
DD KSTSGYAF LGS +I+W SKKQ VA SS EAEYI+ + A + IWLRRIL+D++++
Sbjct: 1275 DDMKSTSGYAFSLGSGVISWVSKKQGSVAQSSAEAEYISASLATSQAIWLRRILEDIKEK 1334
Query: 918 VKTPTTIFCDNMSAIATTKNPVFQSRTKHIELRYHYIRHKVEKKKVELKFINTNEQLADM 1097
T + CDN SAIA KN VF SRT+HI ++YH+I+ + +V+L + + EQ AD+
Sbjct: 1335 QNEATYLLCDNKSAIAIAKNXVFHSRTRHIAVKYHFIKEVISDGEVQLMYCKSEEQXADI 1394
Query: 1098 LTKAVSMDKFV*ARGTMNV 1154
TKA+ ++K V R + V
Sbjct: 1395 FTKALPLEKLVHFRKLLGV 1413
Score = 161 bits (408), Expect(2) = e-112
Identities = 74/127 (58%), Positives = 102/127 (80%), Gaps = 1/127 (0%)
Frame = +2
Query: 5 EVYVEQPLGYVKEGAENKVYKLQKALYSLKQAPRTWNSKIDGYFRQTGFSKSRSEPSLYI 184
E+YVEQP G+V +G ENKVYKL+KALY LKQAPR W ++ID YF + GF +S+SEP+LY+
Sbjct: 1030 EIYVEQPQGFVVDGEENKVYKLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEPTLYV 1089
Query: 185 K-KEGNELLIVCLYVDDLIYTGTSMKILQDFKEAMMKEYEMTDLGLMKYFLGIQVQQSKG 361
K K+ +++LIV LYVDDLI+TG K+++ F+ MMK+YEM+D+GL+ YFLGI+V Q +
Sbjct: 1090 KSKDNSQILIVALYVDDLIFTGNDEKMVEKFRNEMMKKYEMSDMGLLHYFLGIEVYQEED 1149
Query: 362 NIFISQE 382
+FI Q+
Sbjct: 1150 GVFICQK 1156
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 256 bits (655), Expect(2) = e-106
Identities = 123/259 (47%), Positives = 169/259 (65%)
Frame = +3
Query: 387 YLEDLLKRFSMSNCKPISSPAALNEKLQLNDGALKVDEKVYRSLVGSLLYLTHTRPDIMY 566
Y +++LK+F M + P+ +P KL + VD ++SLVGSL YLT TRPDI+Y
Sbjct: 1086 YAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1145
Query: 567 TVSLLSRFLSEPSKLHLAAAKRVLRYLQGTKNFGLKYVKEEVNSLISFTDSD*AGSLDDK 746
V ++SR++ P+ H AAKR+LRY++GT NFGL Y L+ ++DSD G +DD+
Sbjct: 1146 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDR 1205
Query: 747 KSTSGYAFCLGSKLIAWSSKKQKIVALSSTEAEYIAVTDAICEGIWLRRILKDLQQEVKT 926
KSTSG+ F +G W SKKQ IV LS+ EAEY+A T +C IWLR +LK+L +
Sbjct: 1206 KSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEE 1265
Query: 927 PTTIFCDNMSAIATTKNPVFQSRTKHIELRYHYIRHKVEKKKVELKFINTNEQLADMLTK 1106
PT IF DN SAIA KNPVF R+KHI+ RYHYIR V KK V+L+++ T++Q+AD+ TK
Sbjct: 1266 PTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTK 1325
Query: 1107 AVSMDKFV*ARGTMNVAAS 1163
+ + F+ R + VA S
Sbjct: 1326 PLKREDFIKMRSLLGVAKS 1344
Score = 157 bits (398), Expect(2) = e-106
Identities = 72/127 (56%), Positives = 98/127 (77%)
Frame = +2
Query: 2 EEVYVEQPLGYVKEGAENKVYKLQKALYSLKQAPRTWNSKIDGYFRQTGFSKSRSEPSLY 181
EEVY+EQP GY+ +G E+KV +L+KALY LKQAPR WN++ID YF++ F K E +LY
Sbjct: 958 EEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALY 1017
Query: 182 IKKEGNELLIVCLYVDDLIYTGTSMKILQDFKEAMMKEYEMTDLGLMKYFLGIQVQQSKG 361
IK + ++LI CLYVDDLI+TG + + ++FK+ M KE+EMTD+GLM Y+LGI+V+Q
Sbjct: 1018 IKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDN 1077
Query: 362 NIFISQE 382
IFI+QE
Sbjct: 1078 GIFITQE 1084
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 256 bits (655), Expect(2) = e-106
Identities = 123/259 (47%), Positives = 169/259 (65%)
Frame = +3
Query: 387 YLEDLLKRFSMSNCKPISSPAALNEKLQLNDGALKVDEKVYRSLVGSLLYLTHTRPDIMY 566
Y +++LK+F M + P+ +P KL + VD ++SLVGSL YLT TRPDI+Y
Sbjct: 1054 YAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1113
Query: 567 TVSLLSRFLSEPSKLHLAAAKRVLRYLQGTKNFGLKYVKEEVNSLISFTDSD*AGSLDDK 746
V ++SR++ P+ H AAKR+LRY++GT NFGL Y L+ ++DSD G +DD+
Sbjct: 1114 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDR 1173
Query: 747 KSTSGYAFCLGSKLIAWSSKKQKIVALSSTEAEYIAVTDAICEGIWLRRILKDLQQEVKT 926
KSTSG+ F +G W SKKQ IV LS+ EAEY+A T +C IWLR +LK+L +
Sbjct: 1174 KSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEE 1233
Query: 927 PTTIFCDNMSAIATTKNPVFQSRTKHIELRYHYIRHKVEKKKVELKFINTNEQLADMLTK 1106
PT IF DN SAIA KNPVF R+KHI+ RYHYIR V KK V+L+++ T++Q+AD+ TK
Sbjct: 1234 PTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTK 1293
Query: 1107 AVSMDKFV*ARGTMNVAAS 1163
+ + F+ R + VA S
Sbjct: 1294 PLKREDFIKMRSLLGVAKS 1312
Score = 157 bits (398), Expect(2) = e-106
Identities = 72/127 (56%), Positives = 98/127 (77%)
Frame = +2
Query: 2 EEVYVEQPLGYVKEGAENKVYKLQKALYSLKQAPRTWNSKIDGYFRQTGFSKSRSEPSLY 181
EEVY+EQP GY+ +G E+KV +L+KALY LKQAPR WN++ID YF++ F K E +LY
Sbjct: 926 EEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALY 985
Query: 182 IKKEGNELLIVCLYVDDLIYTGTSMKILQDFKEAMMKEYEMTDLGLMKYFLGIQVQQSKG 361
IK + ++LI CLYVDDLI+TG + + ++FK+ M KE+EMTD+GLM Y+LGI+V+Q
Sbjct: 986 IKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDN 1045
Query: 362 NIFISQE 382
IFI+QE
Sbjct: 1046 GIFITQE 1052
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 256 bits (655), Expect(2) = e-106
Identities = 123/259 (47%), Positives = 168/259 (64%)
Frame = +3
Query: 387 YLEDLLKRFSMSNCKPISSPAALNEKLQLNDGALKVDEKVYRSLVGSLLYLTHTRPDIMY 566
Y +++LK+F M + P+ +P KL + VD ++SLVGSL YLT TRPDI+Y
Sbjct: 1086 YAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1145
Query: 567 TVSLLSRFLSEPSKLHLAAAKRVLRYLQGTKNFGLKYVKEEVNSLISFTDSD*AGSLDDK 746
V ++SR++ P+ H AAKR+LRY++GT NFGL Y L+ ++DSD G +DD+
Sbjct: 1146 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDR 1205
Query: 747 KSTSGYAFCLGSKLIAWSSKKQKIVALSSTEAEYIAVTDAICEGIWLRRILKDLQQEVKT 926
KSTSG+ F +G W SKKQ IV LS+ EAEY+A T +C IWLR +LK+L +
Sbjct: 1206 KSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEE 1265
Query: 927 PTTIFCDNMSAIATTKNPVFQSRTKHIELRYHYIRHKVEKKKVELKFINTNEQLADMLTK 1106
PT IF DN SAIA KNPVF R+KHI+ RYHYIR V KK V+L+++ T++Q+AD TK
Sbjct: 1266 PTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTK 1325
Query: 1107 AVSMDKFV*ARGTMNVAAS 1163
+ + F+ R + VA S
Sbjct: 1326 PLKRENFIKMRSLLGVAKS 1344
Score = 157 bits (397), Expect(2) = e-106
Identities = 72/127 (56%), Positives = 97/127 (76%)
Frame = +2
Query: 2 EEVYVEQPLGYVKEGAENKVYKLQKALYSLKQAPRTWNSKIDGYFRQTGFSKSRSEPSLY 181
EEVY+EQP GY+ +G E+KV +L+K LY LKQAPR WN++ID YF++ F K E +LY
Sbjct: 958 EEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALY 1017
Query: 182 IKKEGNELLIVCLYVDDLIYTGTSMKILQDFKEAMMKEYEMTDLGLMKYFLGIQVQQSKG 361
IK + ++LI CLYVDDLI+TG + I ++FK+ M KE+EMTD+GLM Y+LGI+V+Q
Sbjct: 1018 IKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDN 1077
Query: 362 NIFISQE 382
IFI+QE
Sbjct: 1078 GIFITQE 1084