BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018089
         (1608 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35920.3| unnamed protein product [Vitis vinifera]              216   1e-53
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   216   1e-53
ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...   190   1e-45
ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep...   189   2e-45
ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|2...   188   3e-45

>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score =  216 bits (550), Expect = 1e-53
 Identities = 120/257 (46%), Positives = 166/257 (64%), Gaps = 7/257 (2%)
 Frame = +2

Query: 269  LVKENPEKIAPIVGYFPSGYNCSS----EEKNGPSVSVYTKKPR--RVQVVVSPNQDSNI 430
            +V E+PEKI P+VGYFPSG++       E    P+V V+  K R  R+Q+VVSPN DS +
Sbjct: 3    VVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPN-DSKV 61

Query: 431  EFFGSTHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRVKGLNSDEKKLPK 610
             F G+++ GE    Q+CTYALGVLD++T TLKIVPIASNKI RLEPRV G ++   + P 
Sbjct: 62   NFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDE-PS 120

Query: 611  ESIEEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXXEKSAPKGQAVID-KIDGVKI 787
              ++ + T  EK  + R +LT ++G+              +K  P+ Q  +D K+  V I
Sbjct: 121  SLLKGEQTAEEKAGRMR-DLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLKEVVI 179

Query: 788  NKKALETTVGIHSRNIPPHDTIAVTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPD 967
            NK+ALE+T    +RNIPP+D  A TP+ AY LD+II   EWD+LLDIL+ +Q+G ++   
Sbjct: 180  NKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVESS 239

Query: 968  AYPSYVCNRIDKLMEIK 1018
            AY S+VCNRI KL E++
Sbjct: 240  AYSSFVCNRIQKLKELE 256


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
            vinifera]
          Length = 421

 Score =  216 bits (550), Expect = 1e-53
 Identities = 120/257 (46%), Positives = 166/257 (64%), Gaps = 7/257 (2%)
 Frame = +2

Query: 269  LVKENPEKIAPIVGYFPSGYNCSS----EEKNGPSVSVYTKKPR--RVQVVVSPNQDSNI 430
            +V E+PEKI P+VGYFPSG++       E    P+V V+  K R  R+Q+VVSPN DS +
Sbjct: 33   VVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPN-DSKV 91

Query: 431  EFFGSTHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRVKGLNSDEKKLPK 610
             F G+++ GE    Q+CTYALGVLD++T TLKIVPIASNKI RLEPRV G ++   + P 
Sbjct: 92   NFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDE-PS 150

Query: 611  ESIEEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXXEKSAPKGQAVID-KIDGVKI 787
              ++ + T  EK  + R +LT ++G+              +K  P+ Q  +D K+  V I
Sbjct: 151  SLLKGEQTAEEKAGRMR-DLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLKEVVI 209

Query: 788  NKKALETTVGIHSRNIPPHDTIAVTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPD 967
            NK+ALE+T    +RNIPP+D  A TP+ AY LD+II   EWD+LLDIL+ +Q+G ++   
Sbjct: 210  NKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVESS 269

Query: 968  AYPSYVCNRIDKLMEIK 1018
            AY S+VCNRI KL E++
Sbjct: 270  AYSSFVCNRIQKLKELE 286


>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Glycine
            max]
          Length = 424

 Score =  190 bits (482), Expect = 1e-45
 Identities = 110/262 (41%), Positives = 158/262 (60%), Gaps = 4/262 (1%)
 Frame = +2

Query: 269  LVKENPEKIAPIVGYFPSGYNCSSEEKNGPS---VSVYTKKPRRVQVVVSPNQDSNIEFF 439
            +V+E+P K  P+VGYFPSG++       GPS   V  +   P+R+++VV P + S++EF 
Sbjct: 42   VVREHPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVVRPPR-SSVEFV 100

Query: 440  GSTHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRVKGLNSDEKKLPKESI 619
            G+++ GE        YALGVLD++  TLK+VPIA NKI RLEP+VKG+ + E + P  S 
Sbjct: 101  GTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFENE-PANST 159

Query: 620  EEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXXEKSAPKGQAVID-KIDGVKINKK 796
             E++T      QK  E T+++G+              +   P  Q  +D K+  V +NKK
Sbjct: 160  LEEMT----QQQKFAETTSIWGTKKDIEKAKKKLALRQDEDPDSQRNLDVKMKSVTVNKK 215

Query: 797  ALETTVGIHSRNIPPHDTIAVTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPDAYP 976
            ALE+T    SRNIPP+D  A TP+ AY LD+IIL  EWD+L DI  ++Q G +    AYP
Sbjct: 216  ALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEEADFSAYP 275

Query: 977  SYVCNRIDKLMEIKLIVRRKSL 1042
            ++V NRI++L +IK    +K L
Sbjct: 276  TFVRNRIERLRKIKDESEKKQL 297


>ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
            communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA
            polymerase I 49 kDa polypeptide, putative [Ricinus
            communis]
          Length = 481

 Score =  189 bits (479), Expect = 2e-45
 Identities = 117/293 (39%), Positives = 166/293 (56%), Gaps = 36/293 (12%)
 Frame = +2

Query: 269  LVKENPEKIAPIVGYFPSGYNCS-----------SEEKNG------PSVSVYTKKPR--- 388
            ++ +  +K  PIVGYFPSGY  S           S E+N       PSV  Y    R   
Sbjct: 64   VIYDQTDKTPPIVGYFPSGYKPSKHNESNNLHDTSNEENATSSLSQPSVKFYRNAQRTKI 123

Query: 389  ---------------RVQVVVSPNQDSNIEFFGSTHEGEGPDCQICTYALGVLDRDTHTL 523
                           R+++VVSPN  SN++F G +++GE    Q+CTYALGVLD+ T TL
Sbjct: 124  EKSSNERNEKWRSSERMELVVSPN-GSNVDFVGKSYKGEATAAQLCTYALGVLDKKTKTL 182

Query: 524  KIVPIASNKILRLEPRVKGLNSDEKKLPKESIEEDVTPAEKDHQKRIELTTVFGSXXXXX 703
            KI+PIA NKI RLEP+++G+++ +K+ P     ED++      +K+  LT  +G+     
Sbjct: 183  KIMPIAGNKIFRLEPKIQGVDASDKE-PSVLENEDLSKENMAVRKKT-LTDTYGTKKSIT 240

Query: 704  XXXXXXXXXEKSAPKGQAVID-KIDGVKINKKALETTVGIHSRNIPPHDTIAVTPERAYP 880
                     +   P+ +  +D KID V +NK ALE T    +RNIPPH+T A TP+ AYP
Sbjct: 241  QGKRMEIMMQGDNPESRKDLDQKIDNVVVNKAALEDTSAHVARNIPPHNTSATTPQEAYP 300

Query: 881  LDQIILSAEWDHLLDILEHMQSGTKISPDAYPSYVCNRIDKLMEIKLIVRRKS 1039
            L +IIL+ EWD+L D+ E +Q+G   + +AYP +V NRI KL EI+  V RK+
Sbjct: 301  LGRIILTGEWDYLEDLYEILQAGEGAAINAYPVFVRNRIHKLREIQDEVERKT 353


>ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|222839699|gb|EEE78022.1|
            predicted protein [Populus trichocarpa]
          Length = 472

 Score =  188 bits (478), Expect = 3e-45
 Identities = 115/289 (39%), Positives = 161/289 (55%), Gaps = 31/289 (10%)
 Frame = +2

Query: 269  LVKENPEKIAPIVGYFPSGYNCSSEEKNG------------PSVSVYTKKPR-------- 388
            LV    +K  P+VGYFPSGYN                    PSV +Y    R        
Sbjct: 60   LVNNQVDKTPPVVGYFPSGYNPHKTNDINDAQEPILPLAAPPSVKLYRNAQRAKVEKSSG 119

Query: 389  ----------RVQVVVSPNQDSNIEFFGSTHEGEGPDCQICTYALGVLDRDTHTLKIVPI 538
                      R+++VVSPN  SN+EF G++++GE    Q+CTYALGVLD+ T TLKI+PI
Sbjct: 120  EKNEKGRTSERLELVVSPN-GSNVEFVGNSYKGEAMAAQLCTYALGVLDKATQTLKIMPI 178

Query: 539  ASNKILRLEPRVKGLNSDEKKLPKESIEEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXX 718
            A NKILRLEP+++G  + +K+    + E     AE+   +  +L   +G           
Sbjct: 179  AGNKILRLEPKLRGSLAADKE--HANFENGEITAEQRAARIRQLNVQYGPKKSIIQDKKM 236

Query: 719  XXXXEKSAPKGQAVID-KIDGVKINKKALETTVGIHSRNIPPHDTIAVTPERAYPLDQII 895
                +   P  Q  +  KI+   INK ALE+T G  +RNIPP+++ A+TP+ AYPLD II
Sbjct: 237  QALRKGDDPLSQKDLGRKIENAPINKDALESTSGHSARNIPPYNSSAITPQEAYPLDGII 296

Query: 896  LSAEWDHLLDILEHMQSGTKISPDAYPSYVCNRIDKLMEIKLIVRRKSL 1042
            L+ EWD L DI + +Q G +++ +AYP++VCNRI KL EI+  V +K L
Sbjct: 297  LTGEWDFLEDIYKILQVGGEVASNAYPTFVCNRIQKLREIQDEVEKKRL 345