BLASTX nr result

ID: Coptis25_contig00018085 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018085
         (653 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_568151.1| uncharacterized protein [Arabidopsis thaliana] ...    58   2e-06
dbj|BAB09965.1| unnamed protein product [Arabidopsis thaliana]         58   2e-06
ref|XP_002871145.1| hypothetical protein ARALYDRAFT_908428 [Arab...    56   7e-06
ref|XP_003615419.1| hypothetical protein MTR_5g067740 [Medicago ...    55   9e-06

>ref|NP_568151.1| uncharacterized protein [Arabidopsis thaliana]
           gi|17386124|gb|AAL38608.1|AF446875_1 AT5g05220/K18I23_2
           [Arabidopsis thaliana] gi|15450647|gb|AAK96595.1|
           AT5g05220/K18I23_2 [Arabidopsis thaliana]
           gi|332003460|gb|AED90843.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 182

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 26/42 (61%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
 Frame = +1

Query: 370 AIMGEDEGREPNDYHRRAHIFDTCSRVFKSLKEE-DSVPVDY 492
           AIMG D+GR+P DY+RRA IFD  S++FK+L E+ D  PVDY
Sbjct: 97  AIMGNDDGRDPRDYNRRAKIFDKSSKIFKNLNEQRDQAPVDY 138


>dbj|BAB09965.1| unnamed protein product [Arabidopsis thaliana]
          Length = 205

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 26/42 (61%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
 Frame = +1

Query: 370 AIMGEDEGREPNDYHRRAHIFDTCSRVFKSLKEE-DSVPVDY 492
           AIMG D+GR+P DY+RRA IFD  S++FK+L E+ D  PVDY
Sbjct: 120 AIMGNDDGRDPRDYNRRAKIFDKSSKIFKNLNEQRDQAPVDY 161


>ref|XP_002871145.1| hypothetical protein ARALYDRAFT_908428 [Arabidopsis lyrata subsp.
           lyrata] gi|297316982|gb|EFH47404.1| hypothetical protein
           ARALYDRAFT_908428 [Arabidopsis lyrata subsp. lyrata]
          Length = 183

 Score = 55.8 bits (133), Expect = 7e-06
 Identities = 25/42 (59%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
 Frame = +1

Query: 370 AIMGEDEGREPNDYHRRAHIFDTCSRVFKSLKEE-DSVPVDY 492
           AIMG+D+GR+P DY+RRA IFD  S++FK+ KE+ D  PV+Y
Sbjct: 97  AIMGDDDGRDPTDYNRRAKIFDKSSKIFKNSKEQRDQSPVEY 138


>ref|XP_003615419.1| hypothetical protein MTR_5g067740 [Medicago truncatula]
           gi|355516754|gb|AES98377.1| hypothetical protein
           MTR_5g067740 [Medicago truncatula]
          Length = 150

 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 24/35 (68%), Positives = 31/35 (88%)
 Frame = +1

Query: 370 AIMGEDEGREPNDYHRRAHIFDTCSRVFKSLKEED 474
           AIMG+DEG+EPNDY+RRA IFD  S+VF++LKE +
Sbjct: 113 AIMGDDEGKEPNDYNRRAQIFDKSSQVFQALKESN 147


Top