BLASTX nr result

ID: Coptis25_contig00018035 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00018035
         (983 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI31438.3| unnamed protein product [Vitis vinifera]              164   3e-38
ref|XP_002273747.1| PREDICTED: probable lysine-specific demethyl...   164   3e-38
ref|XP_002315312.1| jumonji domain protein [Populus trichocarpa]...   148   2e-33
ref|XP_002531686.1| conserved hypothetical protein [Ricinus comm...   144   4e-32
ref|NP_196044.2| jumonji/Zn finger-class transcription factor EL...   127   4e-27

>emb|CBI31438.3| unnamed protein product [Vitis vinifera]
          Length = 1550

 Score =  164 bits (415), Expect = 3e-38
 Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 2/194 (1%)
 Frame = -3

Query: 981  SAYSKIKAHALAVAEEVGVPFDCDEIPLHCASREDLNLXXXXXXXDEHEECGEDWTSRLG 802
            S Y KIKAHA  VAEE+G PF+ +EIPL  AS+EDLNL       +EH ECGEDWTS+LG
Sbjct: 735  SDYQKIKAHATTVAEEIGHPFNYNEIPLDTASQEDLNLINLAIDDEEHVECGEDWTSKLG 794

Query: 801  LNLRYCVQLKKLSPFKQDQHALALGGLFTSMFGGLDCLDLKWNSRRSRTPYKAAGTRKIK 622
            +NL+YCV+++K SP KQ  HALALGGLFT      + L LKW SR+SR+  K+     IK
Sbjct: 795  INLQYCVKIRKNSPSKQVPHALALGGLFTDTTSSSNFLSLKWQSRKSRSKLKSNLPSHIK 854

Query: 621  --TCGHIEKSHPLVEEAERSNAPRVNKIVQYSRRRFREKVSPLQACSKTRGFYEKQQSRD 448
                  I++   +  ++  S   + +K++QYSRR F+ K    +  S+ RG   K   +D
Sbjct: 855  PYESNQIKEVEVMEGKSVGSTIRKEDKLIQYSRRIFKFKSGGAEGASRARGRPRKNLPKD 914

Query: 447  VFANNEDVGNNVSR 406
            V A + D+  N+SR
Sbjct: 915  VSATSCDIVKNISR 928


>ref|XP_002273747.1| PREDICTED: probable lysine-specific demethylase ELF6-like [Vitis
            vinifera]
          Length = 1415

 Score =  164 bits (415), Expect = 3e-38
 Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 2/194 (1%)
 Frame = -3

Query: 981  SAYSKIKAHALAVAEEVGVPFDCDEIPLHCASREDLNLXXXXXXXDEHEECGEDWTSRLG 802
            S Y KIKAHA  VAEE+G PF+ +EIPL  AS+EDLNL       +EH ECGEDWTS+LG
Sbjct: 706  SDYQKIKAHATTVAEEIGHPFNYNEIPLDTASQEDLNLINLAIDDEEHVECGEDWTSKLG 765

Query: 801  LNLRYCVQLKKLSPFKQDQHALALGGLFTSMFGGLDCLDLKWNSRRSRTPYKAAGTRKIK 622
            +NL+YCV+++K SP KQ  HALALGGLFT      + L LKW SR+SR+  K+     IK
Sbjct: 766  INLQYCVKIRKNSPSKQVPHALALGGLFTDTTSSSNFLSLKWQSRKSRSKLKSNLPSHIK 825

Query: 621  --TCGHIEKSHPLVEEAERSNAPRVNKIVQYSRRRFREKVSPLQACSKTRGFYEKQQSRD 448
                  I++   +  ++  S   + +K++QYSRR F+ K    +  S+ RG   K   +D
Sbjct: 826  PYESNQIKEVEVMEGKSVGSTIRKEDKLIQYSRRIFKFKSGGAEGASRARGRPRKNLPKD 885

Query: 447  VFANNEDVGNNVSR 406
            V A + D+  N+SR
Sbjct: 886  VSATSCDIVKNISR 899


>ref|XP_002315312.1| jumonji domain protein [Populus trichocarpa]
           gi|222864352|gb|EEF01483.1| jumonji domain protein
           [Populus trichocarpa]
          Length = 749

 Score =  148 bits (374), Expect = 2e-33
 Identities = 86/211 (40%), Positives = 125/211 (59%), Gaps = 9/211 (4%)
 Frame = -3

Query: 981 SAYSKIKAHALAVAEEVGVPFDCDEIPLHCASREDLNLXXXXXXXDEHEECGEDWTSRLG 802
           S Y KIKAHA A+AEE+  PF+ +E+PL  AS+E+LNL       ++H ECGEDWTS+LG
Sbjct: 109 SDYQKIKAHAFAIAEEIENPFNYNEVPLEAASQENLNLINLAIDDEDHHECGEDWTSKLG 168

Query: 801 LNLRYCVQLKKLSPFKQDQHALALGGLFTSMFGGLDCLDLKWNSRRSRTPYKAAGTRKIK 622
           +NLRYCV+++K SP K+ QHALALGGLF+      D L++KW SRRSR+  K       K
Sbjct: 169 INLRYCVKIRKNSPSKKVQHALALGGLFSDRSLSSDFLNIKWQSRRSRSRIKFNQPVNCK 228

Query: 621 TCGHIE--KSHPLVEEAERSNAPRVNKIVQYSRRRFREKV----SPLQACSKTRGFYEKQ 460
            C  +E  K   L  +++     +  K++ Y+RR+++ K+    + L+ CS+ R   E+ 
Sbjct: 229 PCKIMETNKDELLGNKSDGLTDKKEKKLIHYTRRKYKVKIDYSTNGLRRCSR-RCLAEEV 287

Query: 459 QSRDVFANNEDVGNNVSRDT---PCAIGTNG 376
                  + +D   +  + T   PC IG  G
Sbjct: 288 SG----TSGDDPDKHAEQTTVIYPCNIGITG 314


>ref|XP_002531686.1| conserved hypothetical protein [Ricinus communis]
            gi|223528691|gb|EEF30705.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1554

 Score =  144 bits (362), Expect = 4e-32
 Identities = 88/226 (38%), Positives = 128/226 (56%), Gaps = 5/226 (2%)
 Frame = -3

Query: 981  SAYSKIKAHALAVAEEVGVPFDCDEIPLHCASREDLNLXXXXXXXDEHEECGEDWTSRLG 802
            S Y KI+AHA A+AEE+  PF+ +EIPL  AS+EDLNL       ++H++CGEDWTS+L 
Sbjct: 708  SDYQKIRAHAAAIAEEIDTPFNYNEIPLESASQEDLNLIYIAIDSEDHDDCGEDWTSKLA 767

Query: 801  LNLRYCVQLKKLSPFKQDQHALALGGLFTSMFGGLDCLDLKWNSRRSRTPYKAAGTRKIK 622
            +NLRYCV+++K SP  + QHALALGGLF+      D L++KW SRRSR+  K       K
Sbjct: 768  INLRYCVKVRKNSPSNKVQHALALGGLFSDETSS-DFLNIKWQSRRSRSRIKLNRPAHCK 826

Query: 621  TCGHIE--KSHPLVEEAERSNAPRVNKIVQYSRRRFREKVSPLQACSK--TRGFYEKQQS 454
                +E  K + L + ++       NK++QY+RR+++ K+     CS    +G   K   
Sbjct: 827  PQNRVETNKENILGKTSDNVIVKTENKLIQYTRRKYKVKID----CSARWNQGCPRKHTM 882

Query: 453  RDVF-ANNEDVGNNVSRDTPCAIGTNGRADFVELNKDSVVNSGMQP 319
              V  AN ED+  +  +       T+     VE+++     S M P
Sbjct: 883  EQVSGANCEDLVKHTRK-------TSKITPAVEISRSDAAGSCMSP 921


>ref|NP_196044.2| jumonji/Zn finger-class transcription factor ELF6 [Arabidopsis
            thaliana] gi|75323150|sp|Q6BDA0.1|ELF6_ARATH RecName:
            Full=Probable lysine-specific demethylase ELF6; AltName:
            Full=Early flowering 6; AltName: Full=Jumonji
            domain-containing protein 11; AltName: Full=Probable
            lysine-specific histone demethylase ELF6
            gi|50513175|gb|AAT77780.1| early flowering 6 [Arabidopsis
            thaliana] gi|332003334|gb|AED90717.1| jumonji/Zn
            finger-class transcription factor ELF6 [Arabidopsis
            thaliana]
          Length = 1340

 Score =  127 bits (319), Expect = 4e-27
 Identities = 75/209 (35%), Positives = 115/209 (55%), Gaps = 8/209 (3%)
 Frame = -3

Query: 975  YSKIKAHALAVAEEVGVPFDCDEIPLHCASREDLNLXXXXXXXDEHEECGEDWTSRLGLN 796
            + K KAHA  VAEEV VPF  D++ L  AS+E+L+L       +E  E   DWTS LG+N
Sbjct: 679  FQKFKAHAAIVAEEVKVPFSYDDVLLESASQEELSLIDLAIEDEEKYEHSVDWTSELGIN 738

Query: 795  LRYCVQLKKLSPFKQDQHALALGGLFTSMFGGLDCLDLKWNSRRSRTPYKAAGTRKIKTC 616
            LRYCV+++K SP K+ QHAL+LGGLF+     LD   ++W  R+SR+  K + T     C
Sbjct: 739  LRYCVKVRKNSPTKKIQHALSLGGLFSDTSQMLDFTTIRWLQRKSRSKAKPSSTSSFTPC 798

Query: 615  GHIE--KSHPLVEEAERSNAPRVNKIVQYSRRR------FREKVSPLQACSKTRGFYEKQ 460
             H+E      L +  +     +  KI+QYSR++        E+V  L   +K++ F +  
Sbjct: 799  EHLEVKADGKLRDNLDSQTGKKEEKIIQYSRKKKLNPKPSAEQVQELATLAKSKDFDKTC 858

Query: 459  QSRDVFANNEDVGNNVSRDTPCAIGTNGR 373
            ++   F++   + + +  +    IG +GR
Sbjct: 859  KN---FSSRSHLDSAIRSEMNSEIGDSGR 884


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