BLASTX nr result
ID: Coptis25_contig00018027
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00018027
(366 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265778.1| PREDICTED: topless-related protein 4 isoform... 117 1e-33
emb|CAN64663.1| hypothetical protein VITISV_035348 [Vitis vinifera] 117 1e-33
ref|XP_003632760.1| PREDICTED: topless-related protein 4 isoform... 117 1e-33
gb|AAF82145.1|AC034256_9 Strong similarity to an unknown protein... 116 4e-33
ref|NP_563981.1| protein TOPLESS [Arabidopsis thaliana] gi|30684... 116 4e-33
>ref|XP_002265778.1| PREDICTED: topless-related protein 4 isoform 1 [Vitis vinifera]
gi|297743470|emb|CBI36337.3| unnamed protein product
[Vitis vinifera]
Length = 1138
Score = 117 bits (293), Expect(2) = 1e-33
Identities = 71/129 (55%), Positives = 78/129 (60%), Gaps = 29/129 (22%)
Frame = +2
Query: 65 PYREASSIAPPQLWQPSSGILMTNEISEANPKDAVPCFVLSK------------------ 190
P +A + PQLWQPSSGILMTN+ISE N +DAVPCF LSK
Sbjct: 816 PTGKACTSVSPQLWQPSSGILMTNDISETNLEDAVPCFALSKNDSYVMSASGGKISLFNM 875
Query: 191 ---------MPPEENITF*--YDDGQ*YIAIGMDDSSIQI*NVRVDEVKSKLKGHQKRVT 337
MPP TF + IAIGM+DSSIQI NVRVDEVKSKLKGHQK+VT
Sbjct: 876 MTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKSKLKGHQKKVT 935
Query: 338 SLAFSNVLN 364
LAFSNVLN
Sbjct: 936 GLAFSNVLN 944
Score = 50.8 bits (120), Expect(2) = 1e-33
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 3 ILALASNAVHKLWKWQRNERNPTGR 77
IL L NAVHKLWKWQRNERNPTG+
Sbjct: 795 ILVLTLNAVHKLWKWQRNERNPTGK 819
>emb|CAN64663.1| hypothetical protein VITISV_035348 [Vitis vinifera]
Length = 1129
Score = 117 bits (293), Expect(2) = 1e-33
Identities = 71/129 (55%), Positives = 78/129 (60%), Gaps = 29/129 (22%)
Frame = +2
Query: 65 PYREASSIAPPQLWQPSSGILMTNEISEANPKDAVPCFVLSK------------------ 190
P +A + PQLWQPSSGILMTN+ISE N +DAVPCF LSK
Sbjct: 807 PTGKACTSVSPQLWQPSSGILMTNDISETNLEDAVPCFALSKNDSYVMSASGGKISLFNM 866
Query: 191 ---------MPPEENITF*--YDDGQ*YIAIGMDDSSIQI*NVRVDEVKSKLKGHQKRVT 337
MPP TF + IAIGM+DSSIQI NVRVDEVKSKLKGHQK+VT
Sbjct: 867 MTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKSKLKGHQKKVT 926
Query: 338 SLAFSNVLN 364
LAFSNVLN
Sbjct: 927 GLAFSNVLN 935
Score = 50.8 bits (120), Expect(2) = 1e-33
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 3 ILALASNAVHKLWKWQRNERNPTGR 77
IL L NAVHKLWKWQRNERNPTG+
Sbjct: 786 ILVLTLNAVHKLWKWQRNERNPTGK 810
>ref|XP_003632760.1| PREDICTED: topless-related protein 4 isoform 2 [Vitis vinifera]
Length = 1128
Score = 117 bits (293), Expect(2) = 1e-33
Identities = 71/129 (55%), Positives = 78/129 (60%), Gaps = 29/129 (22%)
Frame = +2
Query: 65 PYREASSIAPPQLWQPSSGILMTNEISEANPKDAVPCFVLSK------------------ 190
P +A + PQLWQPSSGILMTN+ISE N +DAVPCF LSK
Sbjct: 806 PTGKACTSVSPQLWQPSSGILMTNDISETNLEDAVPCFALSKNDSYVMSASGGKISLFNM 865
Query: 191 ---------MPPEENITF*--YDDGQ*YIAIGMDDSSIQI*NVRVDEVKSKLKGHQKRVT 337
MPP TF + IAIGM+DSSIQI NVRVDEVKSKLKGHQK+VT
Sbjct: 866 MTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKSKLKGHQKKVT 925
Query: 338 SLAFSNVLN 364
LAFSNVLN
Sbjct: 926 GLAFSNVLN 934
Score = 50.8 bits (120), Expect(2) = 1e-33
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 3 ILALASNAVHKLWKWQRNERNPTGR 77
IL L NAVHKLWKWQRNERNPTG+
Sbjct: 785 ILVLTLNAVHKLWKWQRNERNPTGK 809
>gb|AAF82145.1|AC034256_9 Strong similarity to an unknown protein T21F11.18 gi|6730738 from
Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains
multiple WD PF|00400 domains. ESTs gb|Z34157,
gb|AA006273, gb|AA605431, gb|W43588, gb|W43605,
gb|Z34559, gb|R90037, gb|AI994125 come from this gene
[Arabidopsis thaliana]
Length = 1153
Score = 116 bits (290), Expect(2) = 4e-33
Identities = 66/126 (52%), Positives = 78/126 (61%), Gaps = 29/126 (23%)
Frame = +2
Query: 74 EASSIAPPQLWQPSSGILMTNEISEANPKDAVPCFVLSK--------------------- 190
+A++ PPQ WQP+SGILMTN+++E NP++AVPCF LSK
Sbjct: 829 KATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF 888
Query: 191 ------MPPEENITF*--YDDGQ*YIAIGMDDSSIQI*NVRVDEVKSKLKGHQKRVTSLA 346
MPP TF + IAIGMDDS+IQI NVRVDEVKSKLKGH KR+T LA
Sbjct: 889 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLA 948
Query: 347 FSNVLN 364
FSNVLN
Sbjct: 949 FSNVLN 954
Score = 50.1 bits (118), Expect(2) = 4e-33
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 3 ILALASNAVHKLWKWQRNERNPTGR 77
ILALASNA+H LWKWQRNERN TG+
Sbjct: 805 ILALASNAIHLLWKWQRNERNATGK 829
>ref|NP_563981.1| protein TOPLESS [Arabidopsis thaliana] gi|30684518|ref|NP_849672.1|
protein TOPLESS [Arabidopsis thaliana]
gi|79318004|ref|NP_001031050.1| protein TOPLESS
[Arabidopsis thaliana] gi|79318012|ref|NP_001031051.1|
protein TOPLESS [Arabidopsis thaliana]
gi|75332047|sp|Q94AI7.1|TPL_ARATH RecName: Full=Protein
TOPLESS; AltName: Full=WUS-interacting protein 1
gi|15028127|gb|AAK76687.1| unknown protein [Arabidopsis
thaliana] gi|23296857|gb|AAN13188.1| unknown protein
[Arabidopsis thaliana] gi|332191235|gb|AEE29356.1|
protein TOPLESS [Arabidopsis thaliana]
gi|332191236|gb|AEE29357.1| protein TOPLESS [Arabidopsis
thaliana] gi|332191237|gb|AEE29358.1| protein TOPLESS
[Arabidopsis thaliana] gi|332191238|gb|AEE29359.1|
protein TOPLESS [Arabidopsis thaliana]
Length = 1131
Score = 116 bits (290), Expect(2) = 4e-33
Identities = 66/126 (52%), Positives = 78/126 (61%), Gaps = 29/126 (23%)
Frame = +2
Query: 74 EASSIAPPQLWQPSSGILMTNEISEANPKDAVPCFVLSK--------------------- 190
+A++ PPQ WQP+SGILMTN+++E NP++AVPCF LSK
Sbjct: 807 KATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF 866
Query: 191 ------MPPEENITF*--YDDGQ*YIAIGMDDSSIQI*NVRVDEVKSKLKGHQKRVTSLA 346
MPP TF + IAIGMDDS+IQI NVRVDEVKSKLKGH KR+T LA
Sbjct: 867 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLA 926
Query: 347 FSNVLN 364
FSNVLN
Sbjct: 927 FSNVLN 932
Score = 50.1 bits (118), Expect(2) = 4e-33
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 3 ILALASNAVHKLWKWQRNERNPTGR 77
ILALASNA+H LWKWQRNERN TG+
Sbjct: 783 ILALASNAIHLLWKWQRNERNATGK 807