BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017972
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]    89   6e-32
gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subc...    97   4e-31
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]                     86   4e-31
emb|CAN69370.1| hypothetical protein VITISV_010057 [Vitis vinifera]    91   1e-30
dbj|BAM44535.1| polyprotein [Arabidopsis thaliana]                     87   2e-30

>emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]
          Length = 478

 Score = 89.4 bits (220), Expect(2) = 6e-32
 Identities = 47/99 (47%), Positives = 58/99 (58%)
 Frame = -1

Query: 516 PDFVDPARPDHVCRLHKAIYGLKQATRA*FQRLSTFLLHYGFLQSRADPFMFVFRRSSEI 337
           P F+D   P HVC+L KAIYGLKQA RA +  L  FLL +GF+ S AD  +F+F     I
Sbjct: 86  PGFIDRDHPHHVCKLRKAIYGLKQAPRAWYHELCQFLLQFGFINSIADTSLFIFNNHDTI 145

Query: 336 MVLLLYVDDIILTENVXXXXXXXXXXLGA*FEIKDLSSL 220
           + LL+YVDDII+T N           L   F +KDL  L
Sbjct: 146 LYLLVYVDDIIITGNNVEAAQTFIQQLSQRFSLKDLGPL 184



 Score = 73.2 bits (178), Expect(2) = 6e-32
 Identities = 38/73 (52%), Positives = 47/73 (64%)
 Frame = -2

Query: 221 SYFLGIDITSTPTGLHLS*TKYIVGLLRRYSMTECKPYGILVCAKSQLSVSSGDPLPDAT 42
           +YFLG+++TS   GL LS  KYI  LL R  MTE KP    +     L++ SG PL D T
Sbjct: 185 TYFLGVEVTSHTNGLFLSQRKYIADLLNRTHMTEAKPAPTPLATSPILTLQSGTPLSDPT 244

Query: 41  EYRQLVGSLQYLA 3
           EYR +VGSLQYL+
Sbjct: 245 EYRTVVGSLQYLS 257


>gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1597

 Score = 97.1 bits (240), Expect(2) = 4e-31
 Identities = 50/99 (50%), Positives = 66/99 (66%)
 Frame = -1

Query: 516  PDFVDPARPDHVCRLHKAIYGLKQATRA*FQRLSTFLLHYGFLQSRADPFMFVFRRSSEI 337
            P FVDP RPD VCRL+K++YGLKQA RA + R +TFLL  GF ++++D  +FV  R S I
Sbjct: 1211 PGFVDPTRPDMVCRLNKSLYGLKQAPRAWYSRFATFLLSIGFTEAKSDTSLFVLHRDSGI 1270

Query: 336  MVLLLYVDDIILTENVXXXXXXXXXXLGA*FEIKDLSSL 220
            + LLLYVDDI+LT +           L + F +KDL +L
Sbjct: 1271 VYLLLYVDDIVLTASSAQLLQWTISSLQSEFSMKDLGAL 1309



 Score = 62.8 bits (151), Expect(2) = 4e-31
 Identities = 31/71 (43%), Positives = 44/71 (61%)
 Frame = -2

Query: 218  YFLGIDITSTPTGLHLS*TKYIVGLLRRYSMTECKPYGILVCAKSQLSVSSGDPLPDATE 39
            +FLG+ +T   TGL L   +Y + +L R  MT+CKP   LV   ++LS +   P+ D T+
Sbjct: 1311 HFLGVTVTRRDTGLLLHQRQYSLDILERPGMTDCKPCATLVDTCAKLSSTDAPPVADPTD 1370

Query: 38   YRQLVGSLQYL 6
            YR L G+LQYL
Sbjct: 1371 YRSLAGALQYL 1381


>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
          Length = 1429

 Score = 85.9 bits (211), Expect(2) = 4e-31
 Identities = 40/72 (55%), Positives = 52/72 (72%)
 Frame = -1

Query: 516  PDFVDPARPDHVCRLHKAIYGLKQATRA*FQRLSTFLLHYGFLQSRADPFMFVFRRSSEI 337
            P F+D  RP HVCRL+KA+YGLKQA RA +Q L  FLL  GF+ S AD  +F++ R +  
Sbjct: 1049 PGFIDRDRPSHVCRLNKALYGLKQAPRAWYQELRRFLLQAGFVNSLADASLFIYNRHNTF 1108

Query: 336  MVLLLYVDDIIL 301
            M +L+YVDDII+
Sbjct: 1109 MYVLVYVDDIII 1120



 Score = 73.9 bits (180), Expect(2) = 4e-31
 Identities = 38/73 (52%), Positives = 49/73 (67%)
 Frame = -2

Query: 221  SYFLGIDITSTPTGLHLS*TKYIVGLLRRYSMTECKPYGILVCAKSQLSVSSGDPLPDAT 42
            SYFLGI+ T T  GLHL   KYI  LL++++M + KP    +    +LS+ SG  L DAT
Sbjct: 1147 SYFLGIEATRTSRGLHLMQRKYITDLLKKHNMLDTKPVSTPMSPTPKLSLLSGTALDDAT 1206

Query: 41   EYRQLVGSLQYLA 3
            EYR ++GSLQYLA
Sbjct: 1207 EYRTVLGSLQYLA 1219


>emb|CAN69370.1| hypothetical protein VITISV_010057 [Vitis vinifera]
          Length = 591

 Score = 91.3 bits (225), Expect(2) = 1e-30
 Identities = 48/100 (48%), Positives = 59/100 (59%)
 Frame = -1

Query: 516 PDFVDPARPDHVCRLHKAIYGLKQATRA*FQRLSTFLLHYGFLQSRADPFMFVFRRSSEI 337
           P F+D   P HVC+L KAIYGLKQA RA +  L  FLL +GF+ S AD  +F+F     I
Sbjct: 199 PSFIDRDHPHHVCKLRKAIYGLKQAPRAWYHELRQFLLQFGFINSIADTSLFIFNNRGTI 258

Query: 336 MVLLLYVDDIILTENVXXXXXXXXXXLGA*FEIKDLSSLI 217
           + LL+YVDDII+T N           L   F +KDL  LI
Sbjct: 259 LYLLVYVDDIIITGNNVEAAQTFIQQLSQRFSLKDLGPLI 298



 Score = 66.6 bits (161), Expect(2) = 1e-30
 Identities = 35/72 (48%), Positives = 45/72 (62%)
 Frame = -2

Query: 218 YFLGIDITSTPTGLHLS*TKYIVGLLRRYSMTECKPYGILVCAKSQLSVSSGDPLPDATE 39
           YFLG+++TS   GL L+  KYI  LL R  MTE K     +     L++ SG PL + TE
Sbjct: 299 YFLGVEVTSHTNGLFLNQRKYIADLLNRTHMTEAKSAPTPLATSPILTLQSGTPLSNPTE 358

Query: 38  YRQLVGSLQYLA 3
           YR +VGSLQYL+
Sbjct: 359 YRTVVGSLQYLS 370


>dbj|BAM44535.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 86.7 bits (213), Expect(2) = 2e-30
 Identities = 42/75 (56%), Positives = 54/75 (72%)
 Frame = -1

Query: 516  PDFVDPARPDHVCRLHKAIYGLKQATRA*FQRLSTFLLHYGFLQSRADPFMFVFRRSSEI 337
            P FVD  RPD+VCRL KAIYGLKQA RA +  L T+LL  GF+ S +D  +FV +R   I
Sbjct: 1087 PGFVDKERPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSI 1146

Query: 336  MVLLLYVDDIILTEN 292
            + +L+YVDDI++T N
Sbjct: 1147 IYMLVYVDDILITGN 1161



 Score = 70.9 bits (172), Expect(2) = 2e-30
 Identities = 36/72 (50%), Positives = 45/72 (62%)
 Frame = -2

Query: 218  YFLGIDITSTPTGLHLS*TKYIVGLLRRYSMTECKPYGILVCAKSQLSVSSGDPLPDATE 39
            YFLGI+    P GLHLS  +Y + LL R +M   KP    +    +L++ SG  LPD TE
Sbjct: 1187 YFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE 1246

Query: 38   YRQLVGSLQYLA 3
            YR +VGSLQYLA
Sbjct: 1247 YRGIVGSLQYLA 1258